| d48f97b | huaxudavis | 19 November 2013, 18:52:00 UTC | | 19 November 2013, 18:52:00 UTC |
| f7d1532 | huaxudavis | 19 November 2013, 18:51:55 UTC | | 19 November 2013, 18:51:55 UTC |
| f942f1d | huaxudavis | 19 November 2013, 18:51:50 UTC | | 19 November 2013, 18:51:50 UTC |
| 375843c | huaxudavis | 19 November 2013, 18:51:45 UTC | | 19 November 2013, 18:51:45 UTC |
| 92d875e | huaxudavis | 19 November 2013, 18:51:40 UTC | | 19 November 2013, 18:51:40 UTC |
| ff2c600 | huaxudavis | 19 November 2013, 18:51:35 UTC | | 19 November 2013, 18:51:35 UTC |
| c012ebe | huaxudavis | 19 November 2013, 18:41:24 UTC | obsolete version | 19 November 2013, 18:41:24 UTC |
| 1c923dd | huaxudavis | 19 November 2013, 18:41:04 UTC | obsolete version | 19 November 2013, 18:41:04 UTC |
| f1e7a84 | huaxudavis | 19 November 2013, 18:40:17 UTC | obsolete version | 19 November 2013, 18:40:17 UTC |
| 02c7c28 | huaxudavis | 05 November 2013, 00:53:45 UTC | Change how to calculate mismatch, and change the cutoff to ratio instead of absolute value. Fix the bug to deal with empty line. | 05 November 2013, 00:53:45 UTC |
| 7b4691f | huaxudavis | 05 November 2013, 00:31:57 UTC | ignore 'I' line. | 05 November 2013, 00:31:57 UTC |
| b5eaf74 | huaxudavis | 05 November 2013, 00:18:18 UTC | check for the 'I' break line. | 05 November 2013, 00:18:18 UTC |
| e2ac82b | Lutz.Fr | 22 October 2013, 23:40:08 UTC | commented out the print statements for group/block | 22 October 2013, 23:40:08 UTC |
| cd87c09 | Lutz.Fr | 22 October 2013, 22:00:45 UTC | Comment corrections only | 22 October 2013, 22:00:45 UTC |
| 266affb | Lutz.Fr | 22 October 2013, 21:56:44 UTC | Comment changes only - added to the instructions | 22 October 2013, 21:56:44 UTC |
| 947be24 | Lutz.Fr | 16 October 2013, 23:01:45 UTC | Uploaded the scaffold Haplotyper script. | 16 October 2013, 23:01:45 UTC |
| 0d43a61 | huaxudavis | 12 October 2013, 00:12:52 UTC | add a new parameter for cutoff | 12 October 2013, 00:12:52 UTC |
| 2f05029 | huaxudavis | 09 October 2013, 17:59:19 UTC | Change the "usage" | 09 October 2013, 17:59:19 UTC |
| 3194f57 | huaxudavis | 08 October 2013, 18:24:26 UTC | fix the bug -- when the number of scaffolds less than sum number | 08 October 2013, 18:24:26 UTC |
| c8857a3 | Lutz.Fr | 06 October 2013, 22:01:26 UTC | Line 47: theoretically a more sensible typing condition: "if Vcnt < Ucnt and Ccnt < Ucnt" - due to the other conditions I did not observe any genotyping changes with a test data set. Lutz | 06 October 2013, 22:01:26 UTC |
| 3011c16 | Lutz.Fr | 06 October 2013, 21:46:07 UTC | Added python version check. | 06 October 2013, 21:46:07 UTC |
| c363ee0 | Lutz.Fr | 06 October 2013, 20:12:40 UTC | Added comments to "01-CLC_Table_Converter.py" | 06 October 2013, 20:12:40 UTC |
| d1cb544 | Lutz.Fr | 06 October 2013, 20:03:13 UTC | Rewrite of the "01-CLC_Table_Converter" script to accommodate the new formatting of the variant tables exported by CLC which was introduced with version CLC 6.05. Variant tables generated by older CLC versions are still compatible with the new script. | 06 October 2013, 20:03:13 UTC |
| 5605c97 | huaxudavis | 04 October 2013, 21:21:05 UTC | Add option to avoid split when lots of missing data | 04 October 2013, 21:21:05 UTC |
| 2b08ecb | huaxudavis | 04 October 2013, 20:08:55 UTC | Add number to round up at the end of each scaffold | 04 October 2013, 20:08:55 UTC |
| 6d56ee5 | Lutz.Fr | 12 September 2013, 23:56:01 UTC | removed the 'equal' from condition in line 47; should fix the problem of U-calls in empty blocks. | 12 September 2013, 23:56:01 UTC |
| 6a628a5 | huaxudavis | 10 September 2013, 22:51:47 UTC | Change the end position of block | 10 September 2013, 22:51:47 UTC |
| 801ccfb | Lutz.Fr | 08 September 2013, 23:11:50 UTC | added comments to cleaning cutoffs | 08 September 2013, 23:11:50 UTC |
| 7e20959 | Lutz.Fr | 08 September 2013, 22:54:12 UTC | changed cutoff for removal of SNPs to 50% heterozygous calls | 08 September 2013, 22:54:12 UTC |
| 7f54d92 | Lutz.Fr | 06 September 2013, 20:58:28 UTC | added to comment describing the function of the script | 06 September 2013, 20:58:28 UTC |
| b099ce1 | Lutz.Fr | 06 September 2013, 18:05:52 UTC | added to comment describing the script | 06 September 2013, 18:05:52 UTC |
| 604b65d | Lutz.Fr | 06 September 2013, 17:54:12 UTC | added comment explaining what the script does | 06 September 2013, 17:54:12 UTC |
| e041de0 | huaxudavis | 05 September 2013, 23:33:51 UTC | | 05 September 2013, 23:33:51 UTC |
| 528b29a | huaxudavis | 04 September 2013, 23:25:56 UTC | Add end, count column. Avoid some of the theoretically possible artifacts. | 04 September 2013, 23:25:56 UTC |
| 9046e55 | huaxudavis | 04 September 2013, 23:21:47 UTC | Write split position, # of scaffolds and # of new segments to log file | 04 September 2013, 23:21:47 UTC |
| 781b07b | huaxudavis | 04 September 2013, 23:14:36 UTC | b option displays range of cutoff not real position; b option only works with f option; output file name shows option b or l | 04 September 2013, 23:14:36 UTC |
| c1ba563 | huaxudavis | 04 September 2013, 23:03:26 UTC | | 04 September 2013, 23:03:26 UTC |
| e9c8186 | huaxudavis | 04 September 2013, 00:19:04 UTC | add start and end positions and number of items per group | 04 September 2013, 00:19:04 UTC |
| f96fdea | huaxudavis | 04 September 2013, 00:16:50 UTC | Add option to summary by scaffold; Add option to summary by line or block | 04 September 2013, 00:16:50 UTC |
| d7bbe18 | huaxudavis | 04 September 2013, 00:13:13 UTC | Add start position, end position, and # of SNPs in group | 04 September 2013, 00:13:13 UTC |
| 89bf107 | huaxudavis | 03 September 2013, 23:56:30 UTC | | 03 September 2013, 23:56:30 UTC |
| 4c42c63 | huaxudavis | 03 September 2013, 23:56:12 UTC | | 03 September 2013, 23:56:12 UTC |
| 8f8a168 | huaxudavis | 03 September 2013, 23:55:56 UTC | | 03 September 2013, 23:55:56 UTC |
| dbc6e0a | huaxudavis | 03 September 2013, 23:55:16 UTC | | 03 September 2013, 23:55:16 UTC |
| 11efd7b | huaxudavis | 22 August 2013, 20:59:06 UTC | | 22 August 2013, 20:59:06 UTC |
| 2f01f10 | huaxudavis | 22 August 2013, 20:59:04 UTC | | 22 August 2013, 20:59:04 UTC |
| 3f79d74 | huaxudavis | 22 August 2013, 20:50:28 UTC | 02-GenotypingParserXu.py | 22 August 2013, 20:50:28 UTC |
| e8a9bc0 | akozik | 21 April 2010, 15:41:15 UTC | consensus range fixes | 21 April 2010, 15:41:15 UTC |
| c9e9618 | huaxudavis | 21 April 2010, 01:11:40 UTC | | 21 April 2010, 01:11:40 UTC |
| 31981cd | huaxudavis | 20 April 2010, 23:06:56 UTC | | 20 April 2010, 23:06:56 UTC |
| b9cc51f | huaxudavis | 20 April 2010, 21:25:30 UTC | | 20 April 2010, 21:25:30 UTC |
| 3298f72 | huaxudavis | 16 March 2010, 20:31:15 UTC | | 16 March 2010, 20:31:15 UTC |
