| a824c02 | jedick | 28 March 2024, 23:34:02 UTC | Submit version 2.0.0 to CRAN | 28 March 2024, 23:34:02 UTC |
| bf3f268 | jedick | 28 March 2024, 00:04:15 UTC | Add metrics nC and pnC | 28 March 2024, 00:04:15 UTC |
| 45a1097 | jedick | 22 March 2024, 04:59:15 UTC | Add metrics Zcg, nO2g, and nH2Og | 22 March 2024, 04:59:15 UTC |
| 8ae9ea6 | jedick | 16 March 2024, 05:02:10 UTC | Use underscore in function names | 16 March 2024, 05:02:10 UTC |
| 95b5794 | jedick | 11 March 2024, 01:02:37 UTC | Reformat NEWS as NEWS.Rd | 11 March 2024, 01:02:37 UTC |
| 3df152d | jedick | 10 March 2024, 10:05:07 UTC | Move chem16S::add_hull() to add.hull() and add demo/thermophiles.R | 10 March 2024, 10:05:07 UTC |
| 5cab016 | jedick | 10 March 2024, 03:56:45 UTC | Add entropy metrics | 10 March 2024, 03:56:45 UTC |
| 3059a14 | jedick | 08 March 2024, 03:28:52 UTC | Make read.fasta() handle 0-length 'iseq' argument | 08 March 2024, 03:28:52 UTC |
| 2598cf0 | jedick | 05 March 2024, 01:13:07 UTC | Generalize function calls in calc.metrics() | 05 March 2024, 01:13:07 UTC |
| a61da44 | jedick | 04 March 2024, 10:21:36 UTC | Use canprot::read.fasta() in demo and test to avoid using CHNOSZ's version | 04 March 2024, 10:21:36 UTC |
| 85c8816 | jedick | 04 March 2024, 09:51:57 UTC | Add redoxin demo and read.fasta() tests | 04 March 2024, 09:51:57 UTC |
| 7d650ba | jedick | 04 March 2024, 04:40:45 UTC | Add functions for metabolic and biosynthetic cost | 04 March 2024, 04:40:45 UTC |
| 86d8f1c | jedick | 04 March 2024, 01:08:21 UTC | Rebuild vignettes in inst/doc | 04 March 2024, 01:08:21 UTC |
| 602fa52 | jedick | 03 March 2024, 07:28:03 UTC | Add canprot demo | 03 March 2024, 07:28:03 UTC |
| c524852 | jedick | 03 March 2024, 01:47:45 UTC | Rename protcomp() to human.aa() | 03 March 2024, 01:47:45 UTC |
| a5cc89d | jedick | 02 March 2024, 05:28:18 UTC | Move chem16S::calc_metrics() to calc.metrics() | 02 March 2024, 05:28:18 UTC |
| db4e503 | jedick | 01 March 2024, 08:57:52 UTC | Add add.cld() (add compact letter display to boxplots) | 01 March 2024, 08:57:52 UTC |
| 11f3f4e | jedick | 01 March 2024, 05:04:08 UTC | Add V0() (standard molal volume from group additivity) | 01 March 2024, 05:04:08 UTC |
| dee1d8f | jedick | 01 March 2024, 02:47:42 UTC | Remove 'basis' option and basis.text() | 01 March 2024, 02:47:42 UTC |
| 1588ccb | jedick | 29 February 2024, 11:24:39 UTC | Add metrics.Rmd | 29 February 2024, 11:24:39 UTC |
| fa97100 | jedick | 29 February 2024, 09:14:25 UTC | Revise canprot.Rmd | 29 February 2024, 09:14:25 UTC |
| 33ea616 | jedick | 29 February 2024, 01:49:53 UTC | Use stringi::stri_count_fixed for counting letters in sequences | 29 February 2024, 01:49:53 UTC |
| 2bdbe6b | jedick | 29 February 2024, 00:09:15 UTC | Use tinytest and setup GitHub actions | 29 February 2024, 00:09:15 UTC |
| 8f90b04 | jedick | 28 February 2024, 02:37:23 UTC | Move aasum() from CHNOSZ | 28 February 2024, 02:37:23 UTC |
| 22666e2 | jedick | 28 February 2024, 01:23:49 UTC | Move read.fasta() and count.aa() from CHNOSZ | 28 February 2024, 01:23:49 UTC |
| 2517303 | jedick | 27 February 2024, 10:07:32 UTC | Move more functions to JMDplots and retitle package | 27 February 2024, 10:07:32 UTC |
| 132dd95 | jedick | 26 February 2024, 10:53:51 UTC | Actually remove data files that were moved to JMDplots | 26 February 2024, 10:53:51 UTC |
| bff23fb | jedick | 26 February 2024, 09:03:48 UTC | Move differential expression datasets and vignettes to the JMDplots package | 26 February 2024, 09:03:48 UTC |
| 5569a8f | jedick | 26 February 2024, 05:18:06 UTC | Add plength() (protein length) | 26 February 2024, 05:18:06 UTC |
| 0dc1b9d | jedick | 01 January 2024, 03:34:25 UTC | Add '...' argument to chemical metrics | 01 January 2024, 03:34:25 UTC |
| 00699c9 | jedick | 22 September 2023, 12:42:26 UTC | Query cloud mirror for CRAN version badge | 22 September 2023, 12:42:26 UTC |
| fee1bda | jedick | 22 September 2023, 12:31:42 UTC | Use CRAN version badge from shields.io | 22 September 2023, 12:31:42 UTC |
| bbcdd86 | jedick | 09 September 2023, 04:39:45 UTC | Update links in README.md and canprot.Rmd | 09 September 2023, 04:39:45 UTC |
| ce22dc3 | jedick | 17 July 2023, 07:52:20 UTC | Change package title ("... in Cancer and Cell Culture") | 17 July 2023, 07:52:20 UTC |
| 2fa08d9 | jedick | 04 July 2023, 05:28:01 UTC | Rename MWAA() to MW() | 04 July 2023, 05:28:01 UTC |
| 2af98ed | jedick | 17 June 2023, 10:09:14 UTC | Rename ZCAA(), O2AA(), and H2OAA() to Zc(), nO2(), and nH2O() | 17 June 2023, 10:09:14 UTC |
| 55981b9 | jedick | 17 June 2023, 00:36:30 UTC | Change expression() to quote() in cplab | 17 June 2023, 00:36:30 UTC |
| b05ffbd | jedick | 07 June 2023, 00:58:32 UTC | Move CHNOSZ from Depends to Suggests | 07 June 2023, 00:58:32 UTC |
| 291f6ad | jedick | 03 February 2023, 08:13:48 UTC | Remove obsolete references to phylostrata in comments | 03 February 2023, 08:13:48 UTC |
| f212ea5 | jedick | 18 October 2022, 09:27:11 UTC | Add 'terminal_H2O' argument to H2OAA() | 18 October 2022, 09:27:11 UTC |
| 54063ba | jedick | 18 October 2022, 00:00:46 UTC | Capitalize comments | 18 October 2022, 00:00:46 UTC |
| 02a7045 | jedick | 23 June 2022, 11:32:41 UTC | Update canprot.Rmd | 23 June 2022, 11:32:41 UTC |
| ae0c4f4 | jedick | 09 February 2022, 04:02:13 UTC | Add date and version to canprot.Rmd | 09 February 2022, 04:02:13 UTC |
| 141c9cb | jedick | 17 January 2022, 04:35:23 UTC | Submit version 1.1.2 to CRAN | 17 January 2022, 04:35:23 UTC |
| cae8f4b | jedick | 16 January 2022, 06:49:02 UTC | Expand main package vignette | 16 January 2022, 06:49:02 UTC |
| 3fbd0d2 | jedick | 13 January 2022, 03:29:07 UTC | Change "compositional" to "chemical" metrics | 13 January 2022, 03:29:07 UTC |
| 8c2dadc | jedick | 13 January 2022, 03:12:10 UTC | Move phylostrata data and PS() to JMDplots | 13 January 2022, 03:12:10 UTC |
| 6aba036 | jedick | 13 January 2022, 00:35:40 UTC | Make metrics work on single-row matrices | 13 January 2022, 00:35:40 UTC |
| df37469 | jedick | 14 July 2021, 01:14:27 UTC | Move MaximAct() back to JMDplots | 14 July 2021, 01:14:27 UTC |
| 78bd9df | jedick | 12 July 2021, 06:23:40 UTC | Use case-insensitive matching of amino acid abbreviations | 12 July 2021, 06:23:40 UTC |
| e75a7ca | jedick | 06 July 2021, 10:15:13 UTC | Add MaximAct() for maximum activity analysis of protein stability | 06 July 2021, 10:15:13 UTC |
| 6d543fc | jedick | 27 May 2021, 05:41:59 UTC | Update title and citation info | 27 May 2021, 05:41:59 UTC |
| 2fe975f | jedick | 02 May 2021, 11:09:29 UTC | Change ftp:// to http:// in vignettes | 02 May 2021, 11:09:29 UTC |
| 96daa10 | jedick | 10 April 2021, 05:03:37 UTC | Make cleanup() work for single-column data frames | 10 April 2021, 05:03:37 UTC |
| cbe7027 | jedick | 25 March 2021, 01:31:10 UTC | Update year of Comp. Sys. Onco. paper | 25 March 2021, 01:31:10 UTC |
| 3429002 | jedick | 28 January 2021, 07:49:59 UTC | Clean up plots and update links in vignettes | 28 January 2021, 07:49:59 UTC |
| bb5a412 | jedick | 21 October 2020, 00:11:20 UTC | Update date | 21 October 2020, 00:11:20 UTC |
| f167a43 | jedick | 19 October 2020, 10:23:31 UTC | Add "mouse" tag for dataset prostate/ZKL+20 | 19 October 2020, 10:23:31 UTC |
| 220db91 | jedick | 19 October 2020, 01:29:52 UTC | Update Rd files | 19 October 2020, 01:29:52 UTC |
| 1dc6c8a | jedick | 17 October 2020, 09:05:58 UTC | Update URLs | 17 October 2020, 09:05:58 UTC |
| 241942d | jedick | 17 October 2020, 08:24:04 UTC | Move options(browser = NULL) to mkvig() and only run under Windows | 17 October 2020, 08:24:04 UTC |
| a225251 | jedick | 17 October 2020, 08:08:24 UTC | Use options(browser = NULL) in vignettes so they open under Rstudio | 17 October 2020, 08:08:24 UTC |
| 3a1a349 | jedick | 17 October 2020, 07:41:10 UTC | Set options("width" = 72) in canprot.Rmd | 17 October 2020, 07:41:10 UTC |
| 67f64af | jedick | 16 October 2020, 09:30:01 UTC | Plot density contour above points in diffplot() | 16 October 2020, 09:30:01 UTC |
| 0602f97 | jedick | 16 October 2020, 09:07:47 UTC | Delete vignette output files made with QCa basis species | 16 October 2020, 09:07:47 UTC |
| 9730011 | jedick | 16 October 2020, 08:55:18 UTC | Add some lung and prostate cancer datasets | 16 October 2020, 08:55:18 UTC |
| 7691e11 | jedick | 15 October 2020, 23:32:16 UTC | Add O2AA() to metrics | 15 October 2020, 23:32:16 UTC |
| c8023e9 | jedick | 15 October 2020, 13:23:27 UTC | Move CHNOSZ from Depends to Suggests | 15 October 2020, 13:23:27 UTC |
| f01c5e8 | jedick | 15 October 2020, 11:18:48 UTC | Move functions used in older papers to JMDplots | 15 October 2020, 11:18:48 UTC |
| 6e11bb1 | jedick | 15 October 2020, 09:59:33 UTC | Move 'oldvignettes' directory to extdata/cpcp in JMDplots package | 15 October 2020, 09:59:33 UTC |
| 12649d7 | jedick | 11 October 2020, 00:20:10 UTC | Change default 'basis' option to QEC | 11 October 2020, 00:20:10 UTC |
| 94dec2e | jedick | 29 August 2020, 09:32:07 UTC | Add CSV files to oldvignettes | 29 August 2020, 09:32:07 UTC |
| 8578b8e | jedick | 29 August 2020, 08:09:32 UTC | Add mkoldvig() | 29 August 2020, 08:09:32 UTC |
| 570321e | jedick | 29 August 2020, 07:22:25 UTC | Update Ehplot() | 29 August 2020, 07:22:25 UTC |
| 31b4847 | jedick | 29 August 2020, 06:18:39 UTC | Remove oldvignettes/basis_comparison.Rmd and potential_diagrams.Rmd | 29 August 2020, 06:18:39 UTC |
| 4d939cb | jedick | 27 August 2020, 04:19:21 UTC | Add test for compositional metrics (H2OAA() and ZCAA()) | 27 August 2020, 04:19:21 UTC |
| a5685ae | jedick | 25 August 2020, 10:54:52 UTC | Re-add osmotic/HGC+18 (for osmotic_bact) | 25 August 2020, 10:54:52 UTC |
| d971afd | jedick | 25 August 2020, 05:26:02 UTC | Use length-2 labtext in diffplot() for x- and y-axes | 25 August 2020, 05:26:02 UTC |
| 627a34c | jedick | 21 August 2020, 11:54:41 UTC | DESCRIPTION: Move CHNOSZ to Depends | 21 August 2020, 11:54:41 UTC |
| 7d02465 | jedick | 20 August 2020, 11:08:58 UTC | Rename CQa to QCa | 20 August 2020, 11:08:58 UTC |
| eb367ad | jedick | 19 August 2020, 10:01:31 UTC | Change default basis species to CQa | 19 August 2020, 10:01:31 UTC |
| 7b916e4 | jedick | 17 August 2020, 13:25:24 UTC | Add options("basis") for setting basis species | 17 August 2020, 13:25:24 UTC |
| c0ed9fa | jedick | 17 August 2020, 01:52:04 UTC | Add "MTa" basis setting to H2OAA() | 17 August 2020, 01:52:04 UTC |
| 22645ae | jedick | 13 August 2020, 00:50:13 UTC | Increase version number | 13 August 2020, 00:50:13 UTC |
| 4043ffa | jedick | 02 August 2020, 07:43:52 UTC | Move vignette output to inst/doc | 02 August 2020, 07:43:52 UTC |
| 65f01da | jedick | 02 August 2020, 07:05:27 UTC | Change 'render' to 'rmarkdown::render' | 02 August 2020, 07:05:27 UTC |
| 5f3fac6 | jedick | 02 August 2020, 03:52:40 UTC | Update references | 02 August 2020, 03:52:40 UTC |
| 26052ad | jedick | 01 August 2020, 08:20:51 UTC | Add CRAN badge to README.md | 01 August 2020, 08:20:51 UTC |
| 31507a0 | jedick | 31 July 2020, 10:47:12 UTC | Move prostate/MMF+19 to prostate/MMF+20 | 31 July 2020, 10:47:12 UTC |
| 6e81698 | jedick | 31 July 2020, 04:29:07 UTC | Add '...' argument to diffplot() | 31 July 2020, 04:29:07 UTC |
| ca08824 | jedick | 28 July 2020, 06:55:22 UTC | Change "credible region" to "confidence region" | 28 July 2020, 06:55:22 UTC |
| 067d758 | jedick | 27 July 2020, 08:58:54 UTC | Remove glucose/HGC+18 (microbial dataset) | 27 July 2020, 08:58:54 UTC |
| aefc4d8 | jedick | 08 June 2020, 01:02:46 UTC | Add Example 1.5 to CLES.Rd | 08 June 2020, 01:02:46 UTC |
| f5d1ef2 | jedick | 08 June 2020, 01:01:05 UTC | Clean up some references in cpdat.bib | 08 June 2020, 01:01:05 UTC |
| cbe6668 | jedick | 28 May 2020, 09:32:47 UTC | Fix spelling | 28 May 2020, 09:32:47 UTC |
| a476810 | jedick | 28 May 2020, 09:08:32 UTC | Add normal curve probabilities to CLES() | 28 May 2020, 09:08:32 UTC |
| c5ad4a0 | jedick | 28 May 2020, 05:14:00 UTC | Move knitr from Imports to Suggests | 28 May 2020, 05:14:00 UTC |
| 8a91230 | jedick | 20 May 2020, 03:53:13 UTC | Update Dick et al. (2020) reference | 20 May 2020, 03:53:13 UTC |
| 65a9cc6 | jedick | 11 May 2020, 04:23:14 UTC | Add library(canprot) to demos | 11 May 2020, 04:23:14 UTC |
| 38a11f7 | jedick | 11 May 2020, 03:48:32 UTC | Adjust titles | 11 May 2020, 03:48:32 UTC |
