| ddfade2 | John Chilton | 14 October 2013, 15:31:43 UTC | Rev to version 1.19.20. Small fixes to LTQ-iQuant, SFTP server, etc... | 14 October 2013, 15:31:43 UTC |
| adabd1b | John Chilton | 26 May 2013, 20:50:19 UTC | Work toward integration of Galaxy multiple file datasets. | 26 May 2013, 20:50:19 UTC |
| 1eed385 | John Chilton | 26 May 2013, 20:49:38 UTC | Further optimizations for SFTP server. | 26 May 2013, 20:49:38 UTC |
| 18b22f9 | John Chilton | 24 May 2013, 13:13:35 UTC | Merge branch 'master', remote branch 'origin' | 24 May 2013, 13:13:35 UTC |
| 3ad1820 | John Chilton | 24 May 2013, 13:01:41 UTC | Hack to extend depth of get...Path queries before MySQL join limit is hit (for longer paths, split query into fetching id and then loading object). Cache SFTP paths to speed these path queries up and limit the number of really long ones that will be typically executed. | 24 May 2013, 13:07:15 UTC |
| 625910a | John Chilton | 13 May 2013, 19:14:26 UTC | Allow specifing iQuant weights via command-line interface. | 13 May 2013, 19:14:26 UTC |
| f0a96a2 | John Chilton | 07 May 2013, 14:39:19 UTC | Rev version in scripts-pom.xml for proteomics tools. | 07 May 2013, 14:39:19 UTC |
| fe122a6 | John Chilton | 07 May 2013, 14:16:13 UTC | Initial implementation of TMT quantitation to iQuant. | 07 May 2013, 14:16:13 UTC |
| 078b193 | John Chilton | 06 May 2013, 14:13:03 UTC | Fix failing tests due to floating point changes in previous commits. | 06 May 2013, 14:13:03 UTC |
| 5360e28 | John Chilton | 06 May 2013, 13:33:40 UTC | Fix bug preventing group folders from having the same name as a shared folder. | 06 May 2013, 13:33:40 UTC |
| 5df9727 | John Chilton | 11 February 2013, 18:42:28 UTC | Add ant task for deploying service war artifacts. | 11 February 2013, 18:42:28 UTC |
| 8d79584 | John Chilton | 31 January 2013, 19:21:25 UTC | Create high-level macro for writing maven artifacts. | 31 January 2013, 19:21:25 UTC |
| 84c89e9 | John Chilton | 31 January 2013, 15:35:20 UTC | iQuant updates, rev version to 1.19.18 | 31 January 2013, 15:35:20 UTC |
| e060f5c | John Chilton | 28 January 2013, 16:01:49 UTC | Add images for msconvert documentation. | 28 January 2013, 16:01:49 UTC |
| efe7376 | John Chilton | 27 November 2012, 19:10:58 UTC | Peptide and peptide-modification level quantification added for protein pilot results in iquant. Some work on multithreading, but it doesn't seem to work and I have vastly improved efficency by other mechanisms anyway. | 27 November 2012, 19:10:58 UTC |
| 4f09f08 | John Chilton | 20 November 2012, 15:15:30 UTC | Refactoring toward allowing peptide based reports. | 20 November 2012, 15:15:30 UTC |
| dc269f7 | John Chilton | 20 November 2012, 14:27:52 UTC | Initial work on MaxQuant and ProteinPilot report parsers for iQuant. Infrastructure for publishing tint scripts to artifactory. | 20 November 2012, 14:27:52 UTC |
| 2339ead | John Chilton | 19 November 2012, 14:45:10 UTC | Refactoring report processing for iquant to ease support of additional report types. | 19 November 2012, 14:45:10 UTC |
| 90de7a9 | John Chilton | 19 November 2012, 14:16:31 UTC | Massive commit of everything I have been doing over the last couple months, should have never gotten to this point. | 19 November 2012, 14:16:31 UTC |
| 88823ce | John Chilton | 05 September 2012, 01:07:58 UTC | TINT 1.19.11, many small changes, Galaxy integration, itraq scan summary tool. | 05 September 2012, 01:07:58 UTC |
| 902a8ea | John Chilton | 23 July 2012, 01:33:48 UTC | Initial work on skipping storage service for MGF conversion. | 23 July 2012, 01:33:48 UTC |
| f05cb34 | John Chilton | 20 July 2012, 20:29:35 UTC | Implement cloning folders into new top level shared folders (user and group level.) | 20 July 2012, 20:29:35 UTC |
| 9c27ea2 | John Chilton | 16 July 2012, 13:06:16 UTC | Rev to 1.19.8 | 16 July 2012, 13:06:16 UTC |
| 305fe57 | John Chilton | 16 July 2012, 13:05:18 UTC | Add missing file from last commit. | 16 July 2012, 13:05:18 UTC |
| 43ed961 | John Chilton | 16 July 2012, 13:05:01 UTC | Allow X! Tandem to use multiple threads. Include actual retention time in protein pilot MGF exports. | 16 July 2012, 13:05:01 UTC |
| 017dd87 | John Chilton | 26 June 2012, 12:45:35 UTC | Improve logging for TIPServices. | 26 June 2012, 12:45:35 UTC |
| e7b4a82 | John Chilton | 18 June 2012, 03:41:42 UTC | Rev to 1.19.7. | 18 June 2012, 03:41:42 UTC |
| 95776a2 | John Chilton | 18 June 2012, 03:13:14 UTC | Update graphics to ditch tint/protip/genetip names. | 18 June 2012, 03:13:14 UTC |
| 069b5a8 | John Chilton | 17 June 2012, 16:45:48 UTC | Rework jmx stuff to allow multiple TINT analytics per Tomcat/JMX instance by setting different domain. | 17 June 2012, 16:45:48 UTC |
| 225c9b1 | John Chilton | 11 June 2012, 21:04:29 UTC | Small fixes. | 11 June 2012, 21:04:29 UTC |
| 4d70c47 | Jenkins | 30 April 2012, 21:37:36 UTC | Merge commit 'f0c509dd2b8aafa69f706d0382ace3f20d932d4a' into HEAD | 30 April 2012, 21:37:36 UTC |
| f0c509d | John Chilton | 30 April 2012, 21:02:11 UTC | Fix deletion of shared folders. Add comment to previous commit. | 30 April 2012, 21:13:04 UTC |
| c21083a | John Chilton | 30 April 2012, 21:08:01 UTC | Another tweak to readme. | 30 April 2012, 21:08:01 UTC |
| ae7e73b | John Chilton | 30 April 2012, 21:02:52 UTC | Merge branch 'master' of https://github.com/jmchilton/TINT | 30 April 2012, 21:02:52 UTC |
| b151adf | John Chilton | 30 April 2012, 21:02:24 UTC | Small fixes to README. | 30 April 2012, 21:02:24 UTC |
| fe5b007 | Jenkins | 30 April 2012, 20:16:59 UTC | Merge commit '41a153d8b0655a8bc4a34dbc4b014394d6750eae' into HEAD | 30 April 2012, 20:16:59 UTC |
| 41a153d | John Chilton | 30 April 2012, 20:09:00 UTC | Rev project versions to 1.19.6 | 30 April 2012, 20:09:00 UTC |
| cb44255 | Jenkins | 30 April 2012, 20:07:28 UTC | Merge commit 'ac793cd32fed659ccbb665dac1c9e26ef398393f' into HEAD | 30 April 2012, 20:07:28 UTC |
| ac793cd | John Chilton | 30 April 2012, 20:06:35 UTC | Update eclipse classpaths and project descriptions for newer version of eclipse. | 30 April 2012, 20:06:35 UTC |
| ed9d3c9 | Jenkins | 30 April 2012, 14:00:58 UTC | Merge commit '5c31fec7195c57cd9cc35cbe3c6d8ea24ba82fac' into HEAD | 30 April 2012, 14:00:58 UTC |
| 5db1dc1 | Jenkins | 30 April 2012, 13:51:28 UTC | Merge commit '5448734c7a260cd72cbd93d408b2671f7ea11b44' into HEAD | 30 April 2012, 13:51:28 UTC |
| 5c31fec | John Chilton | 30 April 2012, 13:51:19 UTC | Optimizations for SFTP server, massive reduction in number of database calls made while loading a folder. | 30 April 2012, 13:51:19 UTC |
| 5448734 | John Chilton | 30 April 2012, 13:50:00 UTC | Adding itraq scan summarizer for Ebbing's data. | 30 April 2012, 13:50:00 UTC |
| 6e24d1f | Jenkins | 16 April 2012, 15:23:16 UTC | Merge commit '8eafe0d5667d3d0504c53d545510f5f77bbe4b98' into HEAD | 16 April 2012, 15:23:16 UTC |
| 8eafe0d | John Chilton | 16 April 2012, 15:16:32 UTC | Extend job processor factory and impl to use a semaphore to limit the number of jobs that will concurrently preprocess. This is to fix the complete collapse of the sequest service that occurs when 20 profile mode jobs are executed concurrently. | 16 April 2012, 15:16:32 UTC |
| 4b4e8b1 | John Chilton | 16 April 2012, 15:14:32 UTC | Bug fix related to readw4mascot mgf files not having a run name contained in the file. | 16 April 2012, 15:14:32 UTC |
| 310a27c | Jenkins | 13 April 2012, 01:44:39 UTC | Merge commit '8627809f8038a422cdcacb73ca8e03d75091c72d' into HEAD | 13 April 2012, 01:44:39 UTC |
| 8627809 | John Chilton | 13 April 2012, 01:38:16 UTC | Implement readw4mascot style MGF parsing. | 13 April 2012, 01:38:16 UTC |
| 9bfa648 | Jenkins | 05 April 2012, 21:19:08 UTC | Merge commit '8fdd94bc30c912be9435f039ef94f425d4ab31f0' into HEAD | 05 April 2012, 21:19:08 UTC |
| 4542425 | Jenkins | 05 April 2012, 21:10:27 UTC | Merge commit '4447a9b7332275ea8929624a2714e0fe77e5df2d' into HEAD | 05 April 2012, 21:10:27 UTC |
| 8fdd94b | John Chilton | 05 April 2012, 21:05:54 UTC | Rename QC class. | 05 April 2012, 21:05:54 UTC |
| 4447a9b | John Chilton | 05 April 2012, 21:05:29 UTC | Revved to 1.19.4 | 05 April 2012, 21:05:29 UTC |
| f9a6d25 | Jenkins | 05 April 2012, 21:00:27 UTC | Merge commit '5606bf8c641f0f9c5b08b6da81de9d3152b2c2ce' into HEAD | 05 April 2012, 21:00:27 UTC |
| 5606bf8 | John Chilton | 05 April 2012, 20:54:35 UTC | Actually use scan transformers now. | 05 April 2012, 20:54:35 UTC |
| ee834c8 | Jenkins | 05 April 2012, 20:06:26 UTC | Merge commit '0b24584b9bdd21ee98ce7bdb16ee227e39c533d3' into HEAD | 05 April 2012, 20:06:26 UTC |
| 0b24584 | John Chilton | 05 April 2012, 20:00:43 UTC | Adding filtered itraq mgf option to circumvent a bug in proteinpilot. | 05 April 2012, 20:00:43 UTC |
| e29611a | Jenkins | 03 April 2012, 01:24:58 UTC | Merge commit '764174221b2d4874212c4a3cbb23e697f07030aa' into HEAD | 03 April 2012, 01:24:58 UTC |
| 7641742 | John Chilton | 03 April 2012, 01:19:49 UTC | Adding normalize peptides median to itraq reports. | 03 April 2012, 01:19:49 UTC |
| 2095a8e | Jenkins | 02 April 2012, 17:03:56 UTC | Merge commit '634abee00714f8aedac280d945358014b8f27e3a' into HEAD | 02 April 2012, 17:03:56 UTC |
| 634abee | John Chilton | 02 April 2012, 16:59:05 UTC | Updating commons-math to fix bug related to negative p values in ITraq quantitation. | 02 April 2012, 16:59:05 UTC |
| 4ae183f | Jenkins | 28 March 2012, 19:54:06 UTC | Merge commit '3564e72057d53a871598318d1da53a127605399b' into HEAD | 28 March 2012, 19:54:06 UTC |
| 3564e72 | John Chilton | 28 March 2012, 19:50:02 UTC | Adding exta logging related to transfers. | 28 March 2012, 19:50:02 UTC |
| a84a0dc | Jenkins | 28 March 2012, 14:34:04 UTC | Merge commit '9d8e2f95ee58896dd2b62c13592f729afac35f4c' into HEAD | 28 March 2012, 14:34:04 UTC |
| 9d8e2f9 | John Chilton | 28 March 2012, 14:30:01 UTC | Work toward full workflow QC tests. | 28 March 2012, 14:30:01 UTC |
| f3d9b3a | Jenkins | 28 March 2012, 01:22:00 UTC | Merge commit '58e2beac0e03f4deace6a4a1204dc0c5ce48d192' into HEAD | 28 March 2012, 01:22:00 UTC |
| 58e2bea | John Chilton | 28 March 2012, 01:13:37 UTC | Fixes for AB SCIEX. | 28 March 2012, 01:13:37 UTC |
| 7cac01a | Jenkins | 28 March 2012, 00:28:59 UTC | Merge commit '31763ce757b0a534f64d270b1438778f86f787f9' into HEAD | 28 March 2012, 00:28:59 UTC |
| 31763ce | John Chilton | 28 March 2012, 00:25:14 UTC | Work on importing AB SCIEX data. | 28 March 2012, 00:25:14 UTC |
| 29fafd0 | Jenkins | 27 March 2012, 01:55:51 UTC | Merge commit '3cf54828dafb03e4da74397002b0cc13cfede3d4' into HEAD | 27 March 2012, 01:55:51 UTC |
| 3cf5482 | John Chilton | 27 March 2012, 01:52:24 UTC | Initial work on QC functional test. | 27 March 2012, 01:52:24 UTC |
| 14c0575 | John Chilton | 27 March 2012, 01:51:36 UTC | Initial work on two new galaxy tools for converting RAW files. | 27 March 2012, 01:51:36 UTC |
| 0966ac1 | Jenkins | 26 March 2012, 03:39:40 UTC | Merge commit '1476af212cfcf72ef5d0deec915662faed9e4529' into HEAD | 26 March 2012, 03:39:40 UTC |
| 1476af2 | John Chilton | 26 March 2012, 03:36:25 UTC | Fix for MzXML NewFileProcessor. | 26 March 2012, 03:36:25 UTC |
| fc78fba | Jenkins | 25 March 2012, 18:33:37 UTC | Merge commit 'ec58a69ce2c5af0bd440bd568623376be04ad01d' into HEAD | 25 March 2012, 18:33:37 UTC |
| ec58a69 | John Chilton | 25 March 2012, 18:29:42 UTC | Merge branch 'master' of git@github.com:jmchilton/TINT | 25 March 2012, 18:29:42 UTC |
| 8a8afe0 | John Chilton | 25 March 2012, 18:29:31 UTC | Add mzxml new file processor to create peak lists from new mzxml files. | 25 March 2012, 18:29:31 UTC |
| d8cb92a | Jenkins | 15 March 2012, 12:42:32 UTC | Merge commit '878edff6a1cc38ec45ca9aff26d6da701e11159a' into HEAD | 15 March 2012, 12:42:32 UTC |
| 878edff | John Chilton | 15 March 2012, 12:33:36 UTC | Prepend tint- to analytic service wars. | 15 March 2012, 12:33:36 UTC |
| bfe1baa | Jenkins | 15 March 2012, 12:32:54 UTC | Merge commit '450fb15750cf73ec878320eb9909c118bf6f4e99' into HEAD | 15 March 2012, 12:32:54 UTC |
| 450fb15 | John Chilton | 15 March 2012, 12:30:58 UTC | Collect ssh server in dist. | 15 March 2012, 12:30:58 UTC |
| 4fdf839 | John Chilton | 15 March 2012, 12:29:29 UTC | Add war task to several dist commands that lacked it. | 15 March 2012, 12:29:29 UTC |
| 290bddd | Jenkins | 15 March 2012, 02:35:01 UTC | Merge commit '309b5b1d1133a42f2911b452c890f6a4d439b11a' into HEAD | 15 March 2012, 02:35:01 UTC |
| 309b5b1 | John Chilton | 15 March 2012, 02:29:34 UTC | Adding version to war names. | 15 March 2012, 02:29:34 UTC |
| 644ce0b | Jenkins | 15 March 2012, 01:43:49 UTC | Merge commit '42a3cfd00463f195c4c0e46b059b04357f415e02' into HEAD | 15 March 2012, 01:43:49 UTC |
| 42a3cfd | John Chilton | 15 March 2012, 01:41:50 UTC | Merge branch 'master' of github.com:jmchilton/TINT | 15 March 2012, 01:41:50 UTC |
| 13be218 | John Chilton | 15 March 2012, 01:41:13 UTC | Small improvments. | 15 March 2012, 01:41:13 UTC |
| 7693dd5 | Jenkins | 14 March 2012, 21:23:35 UTC | Merge commit '67d63feb00a06e37e7860836f5157c5d01e9ac2f' into HEAD | 14 March 2012, 21:23:35 UTC |
| 67d63fe | John Chilton | 14 March 2012, 21:09:04 UTC | Stop building wars for special globus contains, need to abandon cagrid anyway. | 14 March 2012, 21:09:04 UTC |
| 79a4c35 | Jenkins | 14 March 2012, 19:34:42 UTC | Merge commit 'b30b316c1b7ecf3fabca19ee52e37e5460732f21' into HEAD | 14 March 2012, 19:34:42 UTC |
| b30b316 | John Chilton | 14 March 2012, 19:33:24 UTC | Test commit. | 14 March 2012, 19:33:24 UTC |
| 78bc201 | John Chilton | 14 March 2012, 19:32:43 UTC | Test commit. | 14 March 2012, 19:32:43 UTC |
| 745c7dd | John Chilton | 14 March 2012, 16:53:34 UTC | Tweaks to itraqquantitation as I tried to debug a problem, shouldn't have a huge effect. | 14 March 2012, 16:53:34 UTC |
| 0c6d917 | John Chilton | 14 March 2012, 15:49:51 UTC | Updating download urls for tomcat/globus. The gforge svn repository links seem to be broken. | 14 March 2012, 15:49:51 UTC |
| 894873b | John Chilton | 14 March 2012, 04:49:40 UTC | Merge branch 'master' of git@github.com:jmchilton/TINT | 14 March 2012, 04:49:40 UTC |
| a75fca1 | John Chilton | 14 March 2012, 04:49:10 UTC | Attempts to fix failing jenkins builds. | 14 March 2012, 04:49:10 UTC |
| ecb5442 | John Chilton | 06 March 2012, 14:40:53 UTC | Revving to 1.19.2 | 06 March 2012, 14:40:53 UTC |
| ef69384 | John Chilton | 06 March 2012, 14:26:34 UTC | Updates to new storage testing. | 06 March 2012, 14:26:34 UTC |
| 0ff93da | John Chilton | 09 February 2012, 19:32:37 UTC | Merge branch 'master' of github.com:jmchilton/TINT | 09 February 2012, 19:32:37 UTC |
| 44da2dd | John Chilton | 09 February 2012, 19:32:27 UTC | Improvements to vagrant setup for testing new storage service, bug fixes for storage service config. | 09 February 2012, 19:32:27 UTC |
| 021f042 | John Chilton | 01 February 2012, 21:50:46 UTC | Missed this file FileSourceHolder with last commit. | 01 February 2012, 21:50:46 UTC |
