| aab12e2 | Peter Carbonetto | 15 January 2021, 13:22:45 UTC | Fixed package dependencies in DESCRIPTION. | 15 January 2021, 13:22:45 UTC |
| 030a680 | Peter Carbonetto | 15 December 2020, 16:22:22 UTC | Adjusted formatting in README. | 15 December 2020, 16:22:22 UTC |
| dcddcad | Peter Carbonetto | 15 December 2020, 16:21:27 UTC | Another small edit to README. | 15 December 2020, 16:21:27 UTC |
| 4ac9d8f | Peter Carbonetto | 15 December 2020, 16:20:19 UTC | Updated README. | 15 December 2020, 16:20:19 UTC |
| 5397b7c | Kushal K Dey | 19 November 2018, 08:03:44 UTC | Merge pull request #38 from jhsiao999/master explain verb argument in FitGoM help file | 19 November 2018, 08:03:44 UTC |
| 7481fbe | Chiaowen Joyce Hsiao | 19 November 2018, 05:47:15 UTC | Merge branch 'master' into master | 19 November 2018, 05:47:15 UTC |
| 04d974d | jhsiao999 | 19 November 2018, 05:45:16 UTC | explain verb argument in FitGoM help file | 19 November 2018, 05:45:16 UTC |
| 33eaca2 | Kushal K Dey | 09 November 2018, 22:18:00 UTC | updated structure pie plot with no border default | 09 November 2018, 22:18:00 UTC |
| b88bb21 | Kushal K Dey | 09 November 2018, 21:19:28 UTC | updated the README | 09 November 2018, 21:19:28 UTC |
| fbec612 | Kushal K Dey | 09 November 2018, 21:17:37 UTC | updated the README | 09 November 2018, 21:17:37 UTC |
| e23d028 | Kushal K Dey | 09 November 2018, 21:15:45 UTC | updated the README | 09 November 2018, 21:15:45 UTC |
| c33630f | Kushal K Dey | 09 November 2018, 20:59:50 UTC | updated the README | 09 November 2018, 20:59:50 UTC |
| 6abee43 | Kushal K Dey | 09 November 2018, 18:10:54 UTC | added structure pie chart | 09 November 2018, 18:10:54 UTC |
| b5aa1c2 | Kushal K Dey | 23 October 2018, 16:15:27 UTC | updated the input data checks | 23 October 2018, 16:15:27 UTC |
| d739496 | Kushal K Dey | 23 October 2018, 03:37:13 UTC | added error checks about the data matrix | 23 October 2018, 03:37:13 UTC |
| 881ff43 | Kushal K Dey | 24 August 2018, 18:20:35 UTC | Merge branch 'master' of https://github.com/kkdey/CountClust | 24 August 2018, 18:20:35 UTC |
| 12a11f2 | Kushal K Dey | 24 August 2018, 18:20:22 UTC | fixed compGom function | 24 August 2018, 18:20:22 UTC |
| 81724a2 | Kushal K Dey | 28 July 2018, 19:35:51 UTC | Update README.md | 28 July 2018, 19:35:51 UTC |
| 5e819fc | Kushal K Dey | 26 April 2018, 19:54:28 UTC | updated FitGoM | 26 April 2018, 19:54:28 UTC |
| 3c8f319 | Kushal K Dey | 25 April 2018, 01:24:42 UTC | updated the mouse deng fit data | 25 April 2018, 01:24:42 UTC |
| 325d8d0 | Kushal K Dey | 25 April 2018, 01:12:27 UTC | added NEWS, removed warnings | 25 April 2018, 01:12:27 UTC |
| f136364 | Kushal K Dey | 25 April 2018, 00:18:09 UTC | deprecated 3 functions, changed FitGompool to FitGoM | 25 April 2018, 00:18:09 UTC |
| 6fdb010 | Kushal K Dey | 09 April 2018, 16:29:38 UTC | changed maptpx dependency in DESCRIPTION | 09 April 2018, 16:29:38 UTC |
| cfb37f2 | Kushal K Dey | 06 April 2018, 23:13:49 UTC | made the FitGoMpool generic | 06 April 2018, 23:13:49 UTC |
| 23c731f | Kushal K Dey | 09 February 2018, 16:44:01 UTC | added sample_order_opts | 09 February 2018, 16:44:01 UTC |
| bd5925f | Kushal K Dey | 09 February 2018, 16:11:00 UTC | updated the vignette dependency and the README | 09 February 2018, 16:11:00 UTC |
| 7033e04 | Kushal K Dey | 02 February 2018, 13:13:38 UTC | modified options argument in FitGoMpool | 02 February 2018, 13:13:38 UTC |
| 0b0f68a | Kushal K Dey | 01 February 2018, 19:11:49 UTC | modified FitGoM to make the new version of maptpx compatible with it | 01 February 2018, 19:11:49 UTC |
| 97a19e9 | Kushal K Dey | 30 October 2017, 21:27:35 UTC | Merge branch 'master' of https://github.com/kkdey/CountClust | 30 October 2017, 21:27:35 UTC |
| 4902cc0 | Kushal K Dey | 30 October 2017, 21:22:01 UTC | fixed README | 30 October 2017, 21:22:01 UTC |
| 0d22da4 | Kushal K Dey | 30 October 2017, 21:20:59 UTC | fixed README | 30 October 2017, 21:20:59 UTC |
| 161cc47 | Kushal K Dey | 30 October 2017, 21:16:27 UTC | updated StructureGG | 30 October 2017, 21:16:27 UTC |
| a8bac5c | Kushal K Dey | 30 October 2017, 20:58:16 UTC | updated NEWS | 30 October 2017, 20:58:16 UTC |
| 3a8993b | Kushal K Dey | 30 October 2017, 20:57:22 UTC | updated version number | 30 October 2017, 20:57:22 UTC |
| bd3a87a | Kushal K Dey | 30 October 2017, 20:56:10 UTC | removed bad Citation file | 30 October 2017, 20:56:10 UTC |
| 18baf34 | Kushal K Dey | 30 October 2017, 20:55:41 UTC | updated structureGG and added citation | 30 October 2017, 20:55:41 UTC |
| f2feb8b | Hervé Pagès | 30 October 2017, 16:54:19 UTC | bump x.y.z versions to odd y after creation of RELEASE_3_6 branch | 30 October 2017, 16:54:19 UTC |
| 6144daf | Hervé Pagès | 30 October 2017, 16:41:14 UTC | bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch | 30 October 2017, 16:41:14 UTC |
| 1ad7f8d | Kushal K Dey | 30 October 2017, 15:58:57 UTC | fixed merge conflict | 30 October 2017, 15:58:57 UTC |
| 99e9a6e | Kushal K Dey | 24 October 2017, 23:50:39 UTC | updated the Taddy citation message and the citation | 24 October 2017, 23:50:39 UTC |
| 5e3f3d3 | Kushal K Dey | 24 October 2017, 23:45:35 UTC | updated the Taddy citation message and the citation | 24 October 2017, 23:45:35 UTC |
| 8a8b13f | Kushal K Dey | 24 October 2017, 23:44:12 UTC | updated the Taddy citation message and the citation | 24 October 2017, 23:44:12 UTC |
| 9a92151 | Kushal K Dey | 24 October 2017, 23:25:37 UTC | added citation info | 24 October 2017, 23:25:37 UTC |
| 17465d4 | Kushal K Dey | 24 October 2017, 23:24:36 UTC | added citation info | 24 October 2017, 23:24:36 UTC |
| 575da0e | Kushal K Dey | 24 October 2017, 23:19:43 UTC | updated countclust in travis | 24 October 2017, 23:19:43 UTC |
| b7d0dd9 | Kushal K Dey | 24 October 2017, 23:18:11 UTC | updated the verbose in FirGom | 24 October 2017, 23:18:11 UTC |
| 7ce3e0a | Kushal K Dey | 23 October 2017, 04:20:14 UTC | Merge pull request #34 from jhsiao999/master Fixed vigenette compilation problem | 23 October 2017, 04:20:14 UTC |
| 5ede6d3 | jhsiao999 | 23 October 2017, 04:00:48 UTC | change vignette to Rmarkdown | 23 October 2017, 04:00:48 UTC |
| 43ad622 | jhsiao999 | 23 October 2017, 01:38:48 UTC | change to Rmarkdown for creating vignettes | 23 October 2017, 01:38:48 UTC |
| 8060d06 | jhsiao999 | 23 October 2017, 00:50:13 UTC | add back texinfo | 23 October 2017, 00:50:13 UTC |
| dd24161 | jhsiao999 | 23 October 2017, 00:31:58 UTC | change vignette engine | 23 October 2017, 00:31:58 UTC |
| c9e37e3 | jhsiao999 | 23 October 2017, 00:07:07 UTC | remove sudo apt-get .travis.yml | 23 October 2017, 00:07:07 UTC |
| 98c4783 | jhsiao999 | 23 October 2017, 00:03:03 UTC | fixing vignette compilation error: add sudo apt-get textinfo in .travis.yml | 23 October 2017, 00:03:03 UTC |
| 44743c9 | Kushal K Dey | 22 October 2017, 22:37:43 UTC | Merge pull request #26 from jhsiao999/master fix bug in StructureGGplot.R | 22 October 2017, 22:37:43 UTC |
| 0ffd068 | jhsiao999 | 13 October 2017, 17:45:09 UTC | conflict | 13 October 2017, 17:45:09 UTC |
| 3fdd790 | jhsiao999 | 13 October 2017, 17:44:16 UTC | remove dsstore | 13 October 2017, 17:44:16 UTC |
| 1bcadf8 | Kushal K Dey | 13 October 2017, 17:15:27 UTC | fixed vignette | 13 October 2017, 17:15:27 UTC |
| 34f4df6 | Kushal K Dey | 24 August 2017, 07:26:34 UTC | updated the ExtractTopFeatures function to output the scores | 24 August 2017, 07:26:34 UTC |
| 6d4217c | Kushal K Dey | 27 July 2017, 21:56:47 UTC | allowed for one label in tissue breaks - if (length(tissue_names) > 0) instead of if (length(tissue_names) > 1) in StructureGGplot.R | 27 July 2017, 21:56:47 UTC |
| 1b9aa86 | Herve Pages | 24 April 2017, 19:50:57 UTC | bump x.y.z versions to odd y after creation of 3_5 branch git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@129129 bc3139a8-67e5-0310-9ffc-ced21a209358 | 24 April 2017, 19:50:57 UTC |
| d8f3da4 | Herve Pages | 24 April 2017, 19:25:24 UTC | bump x.y.z versions to even y prior to creation of 3_5 branch git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@129126 bc3139a8-67e5-0310-9ffc-ced21a209358 | 24 April 2017, 19:25:24 UTC |
| f5908b6 | Kushal | 07 March 2017, 22:53:16 UTC | structure gg plot further update | 07 March 2017, 22:53:16 UTC |
| 0db85dc | Kushal K Dey | 05 March 2017, 19:20:30 UTC | updated structureplot function | 05 March 2017, 19:20:30 UTC |
| 13e416e | Kushal K Dey | 29 January 2017, 21:03:08 UTC | structure gg plot | 29 January 2017, 21:03:08 UTC |
| 87fd507 | Kushal K Dey | 15 January 2017, 20:20:12 UTC | Extrct top features | 15 January 2017, 20:20:12 UTC |
| d9c1efb | jhsiao999 | 04 January 2017, 06:20:44 UTC | Merge remote-tracking branch 'upstream/master' | 04 January 2017, 06:20:44 UTC |
| 6cb7e28 | Kushal K Dey | 10 November 2016, 16:32:15 UTC | fixed the formula for BIC | 10 November 2016, 16:32:15 UTC |
| 131d55c | Kushal K Dey | 06 November 2016, 17:29:16 UTC | added BF option to CountClust | 06 November 2016, 17:29:16 UTC |
| 7e5e8f9 | Kushal Dey | 06 November 2016, 03:54:45 UTC | fixed structuregg From: Kushal K Dey <kshldey@gmail.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@123728 bc3139a8-67e5-0310-9ffc-ced21a209358 | 06 November 2016, 03:54:45 UTC |
| 0a0e285 | Kushal Dey | 06 November 2016, 03:51:28 UTC | master updated through release From: Kushal K Dey <kshldey@gmail.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@123727 bc3139a8-67e5-0310-9ffc-ced21a209358 | 06 November 2016, 03:51:28 UTC |
| 73296f4 | Kushal Dey | 06 November 2016, 03:51:21 UTC | updated description From: Kushal K Dey <kshldey@gmail.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@123726 bc3139a8-67e5-0310-9ffc-ced21a209358 | 06 November 2016, 03:51:21 UTC |
| 78e87e5 | Kushal K Dey | 06 November 2016, 01:25:08 UTC | Merge branch 'master' of https://github.com/kkdey/CountClust | 06 November 2016, 01:25:08 UTC |
| 2cb2504 | Kushal K Dey | 06 November 2016, 01:24:23 UTC | added SQUAREM to CountClust | 06 November 2016, 01:24:23 UTC |
| e3179fa | Kushal Dey | 04 November 2016, 19:37:24 UTC | uodated description From: Kushal K Dey <kshldey@gmail.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@123713 bc3139a8-67e5-0310-9ffc-ced21a209358 | 04 November 2016, 19:37:24 UTC |
| f19499b | Kushal K Dey | 03 November 2016, 21:22:09 UTC | Merge pull request #28 from JEFworks/master Add dataset installation to README | 03 November 2016, 21:22:09 UTC |
| 352dd3a | Jean Fan | 03 November 2016, 17:13:14 UTC | Update README.md Add dataset installation to README | 03 November 2016, 17:13:14 UTC |
| 2555578 | Kushal Dey | 02 November 2016, 17:22:53 UTC | removed tex files from vignette From: Kushal K Dey <kshldey@gmail.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@123292 bc3139a8-67e5-0310-9ffc-ced21a209358 | 02 November 2016, 17:22:53 UTC |
| 10e5461 | Kushal Dey | 02 November 2016, 17:22:50 UTC | removed .DS_strore From: Kushal K Dey <kshldey@gmail.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@123291 bc3139a8-67e5-0310-9ffc-ced21a209358 | 02 November 2016, 17:22:50 UTC |
| 1f2c25d | Kushal Dey | 02 November 2016, 17:22:44 UTC | fitgompool added as a function and switch axis position removed From: Kushal K Dey <kshldey@gmail.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@123290 bc3139a8-67e5-0310-9ffc-ced21a209358 | 02 November 2016, 17:22:44 UTC |
| 4e77e95 | Kushal K Dey | 31 October 2016, 01:23:54 UTC | Merge pull request #27 from jnpaulson/master removing switch_axis_position from namespace | 31 October 2016, 01:23:54 UTC |
| 984d575 | jnpaulson | 31 October 2016, 00:49:01 UTC | removing switch_axis_position from namespace | 31 October 2016, 00:49:01 UTC |
| 3f18471 | Kushal K Dey | 28 October 2016, 17:22:25 UTC | topic model added as list | 28 October 2016, 17:22:25 UTC |
| b3c69bb | Kushal K Dey | 28 October 2016, 16:58:07 UTC | now returns BIC with the best model fit | 28 October 2016, 16:58:07 UTC |
| e8bbbc8 | Kushal K Dey | 28 October 2016, 16:45:19 UTC | FitGoM pooled | 28 October 2016, 16:45:19 UTC |
| 9887fbd | jhsiao999 | 28 October 2016, 04:55:13 UTC | fix merge conflict | 28 October 2016, 04:55:13 UTC |
| 5fbfda2 | jhsiao999 | 28 October 2016, 04:53:49 UTC | fix bug related to the default argument of annotation variable | 28 October 2016, 04:53:49 UTC |
| 2cdbaee | Herve Pages | 27 October 2016, 22:00:06 UTC | auxiliary -concordance.tex files don't belong to the package source tree git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@123124 bc3139a8-67e5-0310-9ffc-ced21a209358 | 27 October 2016, 22:00:06 UTC |
| 9e6b667 | Herve Pages | 17 October 2016, 19:10:43 UTC | bump x.y.z versions to odd 'y' after creation of 3_4 branch git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@122712 bc3139a8-67e5-0310-9ffc-ced21a209358 | 17 October 2016, 19:10:43 UTC |
| 2bbf4b8 | Herve Pages | 17 October 2016, 18:45:06 UTC | bump x.y.z versions to even 'y' prior to creation of 3_4 branch git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@122710 bc3139a8-67e5-0310-9ffc-ced21a209358 | 17 October 2016, 18:45:06 UTC |
| a5cca89 | Kushal K Dey | 07 October 2016, 18:50:29 UTC | changed version number to 3.2 | 07 October 2016, 18:50:29 UTC |
| 8429c9e | Kushal Dey | 27 September 2016, 19:11:01 UTC | updated NEWS From: Kushal K Dey <kshldey@gmail.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@121456 bc3139a8-67e5-0310-9ffc-ced21a209358 | 27 September 2016, 19:11:01 UTC |
| cb0a10e | Kushal Dey | 27 September 2016, 18:55:38 UTC | new updates yo the version From: Kushal K Dey <kshldey@gmail.com> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CountClust@121455 bc3139a8-67e5-0310-9ffc-ced21a209358 | 27 September 2016, 18:55:38 UTC |
| fa97281 | Kushal K Dey | 23 September 2016, 18:32:09 UTC | added ExtractHighCorFeatures function | 23 September 2016, 18:32:09 UTC |
| 445b6f7 | Kushal K Dey | 22 September 2016, 16:01:35 UTC | fixed ax iterations + changes to vignette | 22 September 2016, 16:01:35 UTC |
| 31044b8 | Kushal K Dey | 22 September 2016, 15:59:16 UTC | fixed ax iterations + changes to vignette | 22 September 2016, 15:59:16 UTC |
| e397c7c | Kushal K Dey | 22 September 2016, 05:50:19 UTC | bug fix in StructureGGplot code | 22 September 2016, 05:50:19 UTC |
| 8677c7c | Kushal K Dey | 22 September 2016, 05:28:21 UTC | Merge branch 'master' of https://github.com/kkdey/CountClust | 22 September 2016, 05:28:21 UTC |
| 21571ae | Kushal K Dey | 22 September 2016, 05:27:14 UTC | Merge pull request #24 from jhsiao999/master add option when no tissue label | 22 September 2016, 05:27:14 UTC |
| 3dbecaf | Kushal K Dey | 22 September 2016, 05:23:23 UTC | updated tol=0.1 | 22 September 2016, 05:23:23 UTC |
| f7d9d3d | jhsiao999 | 22 September 2016, 04:03:01 UTC | add option when no tissue label | 22 September 2016, 04:03:01 UTC |
