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https://github.com/lmfit/lmfit-py
05 April 2024, 19:15:58 UTC
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Revision Author Date Message Commit Date
e59a460 Matt Newville 02 April 2019, 00:13:20 UTC Merge pull request #548 from lmfit/html_repr alternative html_repr 02 April 2019, 00:13:20 UTC
785fe08 Matthew Newville 31 March 2019, 21:29:17 UTC add test of ci_report() 31 March 2019, 21:29:17 UTC
c1dc8a8 Matthew Newville 31 March 2019, 21:16:37 UTC add test for fit reports + html reprs 31 March 2019, 21:16:37 UTC
dbb36a4 Matthew Newville 31 March 2019, 21:15:08 UTC add html_reprs for Parameters, MinimizerResult, ModelResult 31 March 2019, 21:15:08 UTC
d1ed894 Matt Newville 26 March 2019, 02:52:53 UTC Merge pull request #546 from lmfit/fix_modelresult_loads add MinimizerResult when loading ModelResult 26 March 2019, 02:52:53 UTC
e1f7197 Matthew Newville 24 March 2019, 21:12:58 UTC add automatic running of coverage, codecov reporting 24 March 2019, 21:12:58 UTC
9c2f220 Matthew Newville 24 March 2019, 21:01:38 UTC add codecov.io badge 24 March 2019, 21:01:38 UTC
11b95a1 Matthew Newville 23 March 2019, 22:51:22 UTC add test of repeated ModelResult.dumps()/loads() 23 March 2019, 22:51:22 UTC
2ac35b0 Matthew Newville 23 March 2019, 22:02:41 UTC ensure gformat() respects length 23 March 2019, 22:02:41 UTC
73b57b8 Matthew Newville 22 March 2019, 22:43:32 UTC adding more data -- especially MinimizerResult -- when loading ModelResult 22 March 2019, 22:43:32 UTC
24eecd1 Matt Newville 07 March 2019, 12:12:13 UTC Merge pull request #542 from reneeotten/update-pars-after-guess FIX: update parameters/constraints after guess in built-in models 07 March 2019, 12:12:13 UTC
985c045 Matt Newville 07 March 2019, 03:41:17 UTC Merge pull request #543 from lmfit/report_for_noerrorbar Report for noerrorbar 07 March 2019, 03:41:17 UTC
a0d027a Matthew Newville 07 March 2019, 03:05:30 UTC add warning when errorbars are not reported, with attempt to identify bad variables 07 March 2019, 03:05:30 UTC
00d11fa Matthew Newville 07 March 2019, 03:04:51 UTC drop isort hook 07 March 2019, 03:04:51 UTC
8f3821c reneeotten 05 March 2019, 14:24:34 UTC FIX: update parameters/constraints after guess in built-in models Closes: #539 06 March 2019, 13:35:26 UTC
3135d3e Matt Newville 04 March 2019, 20:34:11 UTC Merge pull request #538 from reneeotten/update-pre-commit-hooks Update pre-commit hooks 04 March 2019, 20:34:11 UTC
f09679c Matt Newville 04 March 2019, 20:33:48 UTC Merge pull request #540 from reneeotten/deprecate-missing-and-drop Show FutureWarning about deprecation of "missing" and "drop" 04 March 2019, 20:33:48 UTC
ad74eba reneeotten 04 March 2019, 02:34:04 UTC MAINT: fix DeprecationWarning in examples 04 March 2019, 03:49:17 UTC
aad3954 reneeotten 04 March 2019, 00:28:37 UTC MAINT: show FutureWarning for 'missing' and 'drop' - the use of 'missing' was deprecated in the documentation in favor of 'nan_policy' with the release of lmfit 0.9.8 - similarly 'drop' was deprecated in favor of 'omit' Now explicitly show a FutureWarning so that the compatibility code can be removed with the next release. 04 March 2019, 03:49:12 UTC
b34c2ff reneeotten 02 March 2019, 21:41:45 UTC STY: fix imports in __init__.py files - isort should ignore lmfit/__init__.py 02 March 2019, 21:44:52 UTC
0d38317 reneeotten 02 March 2019, 16:14:15 UTC STY: fix flake8 F632 warning (use ==/!= to compare str, bytes, and int literals) 02 March 2019, 16:14:15 UTC
fcfad61 reneeotten 02 March 2019, 16:09:02 UTC MAINT: update pre-commit hooks - use offical pycqa/flake8 pre-commit hook repository 02 March 2019, 16:10:47 UTC
a7f5bf6 Matt Newville 23 February 2019, 03:09:18 UTC Merge pull request #536 from lmfit/final_call_to_residual force final evaluation of residual with best-fit parameter values 23 February 2019, 03:09:18 UTC
d1cc5aa Matthew Newville 21 February 2019, 15:19:57 UTC fixes for aborted fits, not applying bounds with least_squares 21 February 2019, 15:19:57 UTC
0880503 Matthew Newville 21 February 2019, 01:36:38 UTC force final evaluation of residual with best-fit parameter values 21 February 2019, 01:36:38 UTC
2ea3330 Matt Newville 31 January 2019, 03:47:08 UTC Merge pull request #533 from reneeotten/pre-commit use the pre-commit framework 31 January 2019, 03:47:08 UTC
e93de34 reneeotten 29 January 2019, 14:36:43 UTC ENH: make building the documentation part of Travis 30 January 2019, 03:38:30 UTC
ac7a8f4 reneeotten 21 January 2019, 21:30:09 UTC MAINT/DOC: update contributing/development information - remove PEP8 checkbox from PR template 29 January 2019, 14:50:20 UTC
8553e2a reneeotten 29 January 2019, 13:02:51 UTC MAINT: fixes prompted by 'rst-backticks' pre-commit hook 29 January 2019, 14:50:20 UTC
f4eb00e reneeotten 29 January 2019, 04:36:28 UTC ENH: add rst-backticks as pre-commit hook 29 January 2019, 14:50:20 UTC
3a034da reneeotten 29 January 2019, 12:58:59 UTC MAINT: fixes prompted by 'rstcheck' pre-commit hooks - removed unneded file test_ci2_result.png 29 January 2019, 14:50:20 UTC
40e1bbd reneeotten 27 January 2019, 21:11:18 UTC ENH: add reStructuredText linters as pre-commit hook - add rstcheck configuration to setup.cfg 29 January 2019, 14:50:20 UTC
457bfb5 reneeotten 22 January 2019, 01:46:15 UTC MAINT: fixes prompted by the 'flake8' pre-commit hook 29 January 2019, 14:50:20 UTC
c5aaea6 reneeotten 27 January 2019, 17:36:20 UTC ENH: add flake8 as pre-commit hook The current default of errors/warnings that are ignored [because they are not rules unanimously accepted, and PEP 8 does not enforce them] are: E121,E123,E126,E226,E24,E704,W503,W504 Because of our current coding practice we do want to enable: - E241: multiple spaces after ',' - E242: tab after ',' - E704: multiple statements on one line (def) Additionally, our code is currently not compliant in respect with the error codes below; so we ignore these for now: - E501: line too long - E731: do not assign a lambda expression, use a def 29 January 2019, 14:50:20 UTC
4d2deb5 reneeotten 21 January 2019, 21:31:13 UTC MAINT: fixes prompted by the 'check-builtin-literals' pre-commit hook 29 January 2019, 14:50:20 UTC
ed4d75b reneeotten 21 January 2019, 21:27:01 UTC MAINT: fixes by the 'trailing-whitespace' pre-commit hook 29 January 2019, 14:50:20 UTC
ec46642 reneeotten 21 January 2019, 21:24:24 UTC MAINT: fixes by the 'requirements-txt-fixer' pre-commit hook 29 January 2019, 14:50:20 UTC
9c4f9da reneeotten 27 January 2019, 17:45:20 UTC MAINT: fixes by the 'end-of-file-fixer' pre-commit hook 29 January 2019, 14:50:20 UTC
9c28457 reneeotten 27 January 2019, 17:34:16 UTC ENH: add more pre-commit hooks 29 January 2019, 14:50:20 UTC
35feaa4 reneeotten 27 January 2019, 17:43:22 UTC MAINT: fixes by the 'pyupgrade' pre-commit hook 29 January 2019, 14:50:20 UTC
d733d6a reneeotten 27 January 2019, 17:32:19 UTC ENH: add pyupgrade as pre-commit hook For now do not automatically change the formatting strings; use the option '-keep-percent-format'. 29 January 2019, 14:50:19 UTC
606d8ac reneeotten 21 January 2019, 21:23:16 UTC MAINT: fixes by the 'isort' pre-commit hook 29 January 2019, 14:50:19 UTC
1f5e7be reneeotten 21 January 2019, 21:13:36 UTC ENH: start using the pre-commit framework - use the pre-commit framework (https://pre-commit.com) to run several hooks before when committing code and ensure compliance with our coding style. - update isort configuration in setup.cfg 29 January 2019, 14:50:19 UTC
43d608c Matt Newville 24 January 2019, 04:31:27 UTC Merge pull request #532 from reneeotten/documentation Documentation 24 January 2019, 04:31:27 UTC
bc5045a reneeotten 22 January 2019, 16:01:30 UTC MAINT: update copyright year in __init__.py 22 January 2019, 16:01:30 UTC
fb687c3 reneeotten 20 January 2019, 23:44:53 UTC MAINT: fix typo in PULL_REQUEST_TEMPLATE.md 20 January 2019, 23:45:00 UTC
712de1f reneeotten 20 January 2019, 18:38:02 UTC DOC: modernize/fix Sphinx configuration * remove unused extensions (including numpydoc) * update conf.py: - use sphinx.ext.imgmath instead of the no-longer existing sphinx.ext.pngmath (only for epub) - use SVG figures when building EPUB for higher quality - automatically update copyright year - use Python 3 for linking to Python documentation * update Makefile 20 January 2019, 22:58:14 UTC
1195717 reneeotten 20 January 2019, 18:03:48 UTC DOC: fix Sphinx warning 20 January 2019, 22:54:33 UTC
3fa8840 reneeotten 20 January 2019, 16:56:42 UTC MAINT: update copyright year and fix typo in LICENSE 20 January 2019, 22:54:33 UTC
116d1ce Matt Newville 20 January 2019, 16:57:00 UTC Merge pull request #531 from reneeotten/github GitHub template updates 20 January 2019, 16:57:00 UTC
2b0d796 reneeotten 20 January 2019, 02:36:11 UTC MAINT: update PULL_REQUEST_TEMPLATE.md 20 January 2019, 03:14:20 UTC
be57ae5 reneeotten 19 January 2019, 23:44:26 UTC MAINT: update CONTRIBUTING.md 20 January 2019, 03:10:20 UTC
71abb16 reneeotten 19 January 2019, 23:01:41 UTC MAINT: update GitHub Issues template 20 January 2019, 03:10:20 UTC
6871b3e reneeotten 20 January 2019, 02:59:55 UTC MAINT: update text in README.rst 20 January 2019, 03:10:13 UTC
dfb6878 reneeotten 19 January 2019, 21:15:32 UTC MAINT: update badges in README.rst 20 January 2019, 02:54:00 UTC
f3dfdd8 Matt Newville 16 January 2019, 02:49:00 UTC Merge pull request #529 from lmfit/delay_pyplot_import delay import of matplotlib.pyplot until actually needed 16 January 2019, 02:49:00 UTC
3d8116a Matthew Newville 14 January 2019, 15:52:29 UTC delay import of matplotlib.pyplot until actually needed 14 January 2019, 15:52:29 UTC
03f1b9b Matt Newville 14 January 2019, 15:49:22 UTC Merge pull request #526 from reneeotten/scipy-differential_evolution Bump minimum SciPy version and support parallelization in DE 14 January 2019, 15:49:22 UTC
f4fcc8d reneeotten 12 January 2019, 19:03:25 UTC ENH: support parallelization in differential_evolution Add support for parallelization in differential_evolution introduced in SciPy v1.2 (new arguments: updating and workers. From the SciPy release notes: differential_evolution now has the updating and workers keywords. The first chooses between continuous updating of the best solution vector (the default), or once per generation. Continuous updating can lead to faster convergence. The workers keyword accepts an int or map-like callable, and parallelises the solver (having the side effect of updating once per generation). Supplying an int evaluates the trial solutions in N parallel parts. Supplying a map-like callable allows other parallelisation approaches (such as mpi4py, or joblib) to be used. 14 January 2019, 03:33:52 UTC
f31fc42 reneeotten 12 January 2019, 18:57:06 UTC ENH: update methods that accept jac/hess keyword 14 January 2019, 03:33:52 UTC
79d708c reneeotten 12 January 2019, 18:38:41 UTC ENH: add atol keyword to differential_evolution - added in SciPy 0.19 14 January 2019, 03:33:52 UTC
95f84b0 reneeotten 12 January 2019, 18:34:45 UTC MAINT: keyword seed in basinhopping is always present With the minimum requirement of scipy version 0.19, there is no need anymore to check whether the seed keyword is present in basinhopping. 14 January 2019, 03:33:52 UTC
32affdb reneeotten 12 January 2019, 18:31:39 UTC MAINT: bump scipy requirement to 0.19 14 January 2019, 03:33:52 UTC
e1d7acc Matt Newville 13 January 2019, 17:57:06 UTC Merge pull request #525 from reneeotten/pytest-updates Test-suite updates/fixes 13 January 2019, 17:57:06 UTC
3678c52 reneeotten 10 January 2019, 23:47:07 UTC TST: relax test criteria and stop testing Python 3.4 - criteria in test_basinhopping.py and test_covariance_matrix.py are too strict. Often tests fail randomly, but with values that are certainly close enough... 10 January 2019, 23:47:10 UTC
23d6975 reneeotten 10 January 2019, 16:49:06 UTC TST: fix nan_policy_test for differential_evolution In SciPy version 1.2 this gives a RuntimeError instead of ValueError. 10 January 2019, 21:32:50 UTC
dd378b1 reneeotten 15 December 2018, 17:00:16 UTC TST: use pytest features and increase coverage in test_saveload.py 09 January 2019, 15:02:57 UTC
f8668fc reneeotten 11 December 2018, 18:55:11 UTC TST: use pytest features and increase coverage in test_least_squares.py 09 January 2019, 15:00:09 UTC
f219574 reneeotten 07 December 2018, 03:43:44 UTC TST: use pytest features and update docstrings in test_height_fwhm.py 14 December 2018, 22:36:55 UTC
49c7517 reneeotten 04 December 2018, 14:33:57 UTC TST: merge test_algebraic_constraints*.py and use pytest features 14 December 2018, 04:24:09 UTC
b0c96e4 reneeotten 02 December 2018, 17:28:14 UTC MAINT: use the correct type (i.e., list) for sigmas 14 December 2018, 04:24:09 UTC
e5f4b14 reneeotten 02 December 2018, 17:15:26 UTC MAINT: docstring updates in confidence.py 14 December 2018, 04:24:09 UTC
51d8293 reneeotten 01 December 2018, 18:23:23 UTC MAINT: various small changes in confidence.py - fix warning messages - make use of dictionary comprehension 14 December 2018, 04:24:09 UTC
d1d98e5 reneeotten 01 December 2018, 17:31:23 UTC TST: use pytest features and increase coverage in test_confidence.py 14 December 2018, 04:24:09 UTC
d690e82 Matt Newville 13 December 2018, 23:22:06 UTC Merge pull request #523 from dimapu/double_lorentzian Add Double Lorentzian Model 13 December 2018, 23:22:06 UTC
64586ff dpustakhod 13 December 2018, 09:41:26 UTC Fix typo 13 December 2018, 09:41:26 UTC
1307e22 dpustakhod 13 December 2018, 09:40:46 UTC Rename double_lorentzian() to split_lorentzian() 13 December 2018, 09:40:46 UTC
d03da2d dpustakhod 12 December 2018, 12:44:49 UTC Simplify definition of double_lorentzian() 12 December 2018, 12:46:29 UTC
053c1cd dpustakhod 11 December 2018, 22:41:21 UTC Add DoubleLorentzianModel to the peak-like models list 11 December 2018, 22:41:21 UTC
d88db35 dpustakhod 11 December 2018, 22:35:28 UTC Update docstrings for double_lorentzian() and DoubleLorentzianModel 11 December 2018, 22:35:47 UTC
47493c0 dpustakhod 11 December 2018, 22:15:44 UTC Add DoubleLorentzianModel class 11 December 2018, 22:18:24 UTC
5b6389e dpustakhod 11 December 2018, 21:55:30 UTC Rename step() to heaviside_step() to avoid name conflict 11 December 2018, 21:55:30 UTC
603d836 dpustakhod 11 December 2018, 21:53:10 UTC Add double_lorentzian() lineshape 11 December 2018, 21:53:10 UTC
1268177 Matt Newville 29 November 2018, 01:40:50 UTC Merge pull request #520 from reneeotten/pytest test-suite: use pytest features, improve coverage, fix mistakes 29 November 2018, 01:40:50 UTC
852685a reneeotten 26 November 2018, 20:42:18 UTC TST: update dependencies in .travis.yml - install pytest using pip - install emcee/numdifftools using pip and only when version == latest - use pip because conda does not have the latest versions for all Python releases 27 November 2018, 02:38:43 UTC
f243c9a reneeotten 26 November 2018, 16:55:14 UTC FIX: do not try to calculate cov_x after AbortFitException 27 November 2018, 02:31:41 UTC
404670f reneeotten 23 November 2018, 18:08:03 UTC TST: use pytest features and increase coverage in test_itercb.py 27 November 2018, 02:31:41 UTC
0a6e3ae reneeotten 22 November 2018, 02:12:39 UTC FIX: make logic explicit in show_candidates 27 November 2018, 02:31:41 UTC
d417d59 reneeotten 18 November 2018, 22:58:55 UTC TST: use pytest features and increase coverage in test_brute.py 27 November 2018, 02:31:41 UTC
fee80f3 reneeotten 18 November 2018, 19:04:06 UTC TST: use pytest features and increase coverage in test_basinhopping.py 27 November 2018, 02:31:41 UTC
4cdef62 reneeotten 13 November 2018, 15:16:27 UTC TST: use pytest features and increase coverage in test_ampgo.py 27 November 2018, 02:31:41 UTC
7fec373 Matt Newville 26 November 2018, 15:25:27 UTC Merge pull request #519 from reneeotten/PR512 updates to complement PR512 26 November 2018, 15:25:27 UTC
deff523 reneeotten 22 November 2018, 04:06:14 UTC MAINT: small fixes after merge of PR #512 22 November 2018, 15:48:35 UTC
f9e92d5 reneeotten 21 November 2018, 15:54:41 UTC TST: add simple test for using method='emcee' 22 November 2018, 15:48:35 UTC
92fa6d7 reneeotten 21 November 2018, 02:25:45 UTC DOC: update release notes 22 November 2018, 15:48:35 UTC
0a3396f reneeotten 21 November 2018, 02:18:45 UTC DOC: update text and output of emcee example - keep colors in the documents consistent 22 November 2018, 15:48:35 UTC
69dfd02 Matt Newville 21 November 2018, 21:22:18 UTC Merge pull request #512 from FaustinCarter/add_emcee Add emcee 21 November 2018, 21:22:18 UTC
33f6c13 Faustin Carter 19 November 2018, 00:00:46 UTC Add newline at end of file for PEP8 19 November 2018, 00:00:46 UTC
2debc53 Faustin Carter 18 November 2018, 23:50:09 UTC Remove orphan comment that was missed a few commits back. 18 November 2018, 23:58:40 UTC
a344d12 Faustin Carter 18 November 2018, 23:49:38 UTC Add emcee method to table in docs 18 November 2018, 23:58:00 UTC
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