| 7dd1187 | Lorena Pantano | 24 June 2019, 19:02:12 UTC | Merge branch 'miraligner' of github.com:lpantano/seqbuster into miraligner | 24 June 2019, 19:02:12 UTC |
| 1a768a9 | Lorena Pantano | 24 June 2019, 19:00:55 UTC | update with version 3.5 | 24 June 2019, 19:00:55 UTC |
| b0673d9 | Lorena Pantano | 23 May 2019, 20:57:02 UTC | update release link | 23 May 2019, 20:57:02 UTC |
| 6b1b1ce | Lorena Pantano | 23 May 2019, 20:55:10 UTC | update figures | 23 May 2019, 20:55:10 UTC |
| b64d4f2 | Lorena Pantano | 23 May 2019, 20:52:47 UTC | allow more than 3 nts on trimming | 23 May 2019, 20:52:47 UTC |
| c1c325c | Lorena Pantano | 27 November 2018, 15:19:47 UTC | Merge branch 'miraligner' of github.com:lpantano/seqbuster into miraligner | 27 November 2018, 15:19:47 UTC |
| 0b89e5f | Lorena Pantano | 27 November 2018, 14:47:21 UTC | version 3.3 | 27 November 2018, 14:47:21 UTC |
| 4580a6a | Lorena Pantano | 03 October 2018, 14:23:34 UTC | improve readme information | 03 October 2018, 14:23:34 UTC |
| cd902be | Lorena Pantano | 03 October 2018, 14:19:05 UTC | update private | 03 October 2018, 14:19:05 UTC |
| ce410f2 | Lorena Pantano | 03 October 2018, 14:18:14 UTC | Update binary jar | 03 October 2018, 14:18:14 UTC |
| 247a6d2 | Lorena Pantano | 03 October 2018, 14:10:24 UTC | Add logger to the code instead of println for debugging. FINALLY! 3.2 | 03 October 2018, 14:10:24 UTC |
| eb750f5 | Lorena Pantano | 02 October 2018, 19:37:12 UTC | upload real file | 02 October 2018, 19:37:12 UTC |
| ff76702 | Lorena Pantano | 02 October 2018, 19:22:03 UTC | fix download link | 02 October 2018, 19:22:03 UTC |
| 29731d5 | Lorena Pantano | 02 October 2018, 19:20:30 UTC | add validator | 02 October 2018, 19:20:30 UTC |
| 585b08d | Lorena Pantano | 02 October 2018, 19:18:35 UTC | load src | 02 October 2018, 19:18:35 UTC |
| 572b1c1 | Lorena Pantano | 21 September 2018, 13:45:51 UTC | update to 3.1 | 21 September 2018, 13:45:51 UTC |
| 9972877 | Lorena Pantano | 20 July 2016, 18:43:22 UTC | Fix addition annotation | 20 July 2016, 18:43:22 UTC |
| 9544da9 | Lorena Pantano | 19 July 2016, 13:49:40 UTC | Trying to get the correct JAR for java 8 | 19 July 2016, 13:49:40 UTC |
| 142c16d | Lorena Pantano | 19 July 2016, 13:36:43 UTC | Fix java8 index error | 19 July 2016, 13:36:43 UTC |
| 58e5258 | Lorena Pantano | 27 June 2016, 14:41:06 UTC | migrate to java 1.8 | 27 June 2016, 14:41:06 UTC |
| 660083b | Lorena | 09 November 2015, 00:40:32 UTC | Fix freq parameter | 09 November 2015, 00:40:32 UTC |
| db38ffb | Lorena | 09 November 2015, 00:20:29 UTC | Fix output line when freq is on | 09 November 2015, 00:20:29 UTC |
| 7b80cc2 | Lorena | 27 October 2015, 18:04:09 UTC | Allow mialigner alone | 27 October 2015, 18:04:09 UTC |
| 38f7458 | Lorena | 22 October 2015, 19:32:09 UTC | Add counts 0 if not proper name to defer | 22 October 2015, 19:32:09 UTC |
| df2ab99 | Lorena | 22 October 2015, 18:52:52 UTC | Fix addition naming | 22 October 2015, 18:52:52 UTC |
| 7ec5e5c | Lorena | 22 October 2015, 18:07:09 UTC | precursor in output | 22 October 2015, 18:07:09 UTC |
| aee9600 | Lorena | 20 October 2015, 22:38:00 UTC | Change naming to upper cases and lower cases respect to the reference. | 20 October 2015, 22:38:00 UTC |
| 9d7eed2 | Lorena | 20 October 2015, 22:06:35 UTC | Merge branch 'master' of github.com:lpantano/seqbuster | 20 October 2015, 22:06:35 UTC |
| 1d510b6 | Lorena | 20 October 2015, 22:06:29 UTC | Change naming to Insert and Deletions respect to the reference. | 20 October 2015, 22:06:29 UTC |
| d399d2e | Lorena Pantano | 16 October 2015, 18:51:26 UTC | Add mirna annotation comparison link | 16 October 2015, 18:51:26 UTC |
| 45e8b0a | Lorena Pantano | 16 October 2015, 18:50:19 UTC | Update README.md | 16 October 2015, 18:50:19 UTC |
| 32ba131 | Lorena | 23 June 2015, 19:29:32 UTC | update current actives modules | 23 June 2015, 19:29:32 UTC |
| 0ce9f6d | Lorena | 17 February 2015, 21:47:58 UTC | update to mirbase 21 | 17 February 2015, 21:47:58 UTC |
| 18ecee3 | Lorena | 06 November 2014, 20:25:29 UTC | support fastq | 06 November 2014, 20:25:29 UTC |
| b9329e8 | Lorena | 20 October 2014, 23:39:05 UTC | add negative binomial for abundance simulation | 20 October 2014, 23:39:05 UTC |
| c8c5213 | Lorena | 14 October 2014, 21:39:18 UTC | add minl to miraligner | 14 October 2014, 21:39:18 UTC |
| a2d1b41 | Lorena | 10 October 2014, 19:14:35 UTC | fix stdin reading | 10 October 2014, 19:14:35 UTC |
| 542499e | Lorena | 10 October 2014, 16:05:06 UTC | acception /dev/stdin | 10 October 2014, 16:05:06 UTC |
| 7378c73 | Lorena | 10 September 2014, 18:05:10 UTC | make sure nt error is different from template | 10 September 2014, 18:05:10 UTC |
| b972157 | Lorena | 03 September 2014, 21:01:10 UTC | add mirna name | 03 September 2014, 21:01:10 UTC |
| 536817d | Lorena | 12 August 2014, 19:26:51 UTC | fix minor bug in adrec: showing wrong adapter info. thanks to Isabell Bludau | 12 August 2014, 19:26:51 UTC |
| c708f99 | Lorena | 26 June 2014, 16:29:26 UTC | isomiRs as module | 26 June 2014, 16:29:26 UTC |
| 3a913bc | Lorena | 26 June 2014, 16:26:12 UTC | remove source | 26 June 2014, 16:26:12 UTC |
| 35a1772 | Lorena | 24 June 2014, 21:41:43 UTC | changes in format and pdf vignette | 24 June 2014, 21:41:43 UTC |
| 4a23ddd | Lorena | 18 June 2014, 15:06:05 UTC | fix problem at start app | 18 June 2014, 15:06:05 UTC |
| ae0f7c5 | Lorena Pantano | 06 May 2014, 13:39:43 UTC | remove knitr output | 06 May 2014, 13:39:43 UTC |
| 418aa62 | Lorena Pantano | 06 May 2014, 13:38:35 UTC | CMD check clean | 06 May 2014, 13:38:35 UTC |
| 90b66de | Lorena Pantano | 06 May 2014, 11:52:00 UTC | fix makeCounts and normCounts | 06 May 2014, 11:52:00 UTC |
| d564417 | lpantano | 24 April 2014, 08:51:03 UTC | new vignette, and data | 24 April 2014, 08:51:03 UTC |
| 9585018 | lpantano | 17 April 2014, 16:24:59 UTC | new examples | 17 April 2014, 16:24:59 UTC |
| 0c484c4 | lpantano | 17 April 2014, 16:24:50 UTC | adding lattice as depends | 17 April 2014, 16:24:50 UTC |
| e9e18b4 | lpantano | 17 April 2014, 16:14:42 UTC | Merge branch 'master' of https://github.com/lpantano/seqbuster | 17 April 2014, 16:14:42 UTC |
| 086e89f | lpantano | 17 April 2014, 16:14:37 UTC | new plsda, and new makecounts function | 17 April 2014, 16:14:37 UTC |
| d7d27a3 | Lorena Pantano | 17 April 2014, 16:05:57 UTC | Merge branch 'master' of https://github.com/lpantano/seqbuster | 17 April 2014, 16:05:57 UTC |
| 957f12d | Lorena Pantano | 17 April 2014, 16:05:49 UTC | some minor changes | 17 April 2014, 16:05:49 UTC |
| c0463ff | Lorena Pantano | 17 April 2014, 16:04:10 UTC | more samples | 17 April 2014, 16:04:10 UTC |
| 673becf | lpantano | 08 April 2014, 13:34:48 UTC | add group legend to plotIso | 08 April 2014, 13:34:48 UTC |
| 9f8951d | lpantano | 08 April 2014, 13:30:59 UTC | redo with new version of roxygen2 | 08 April 2014, 13:30:59 UTC |
| 2a46bee | lpantano | 08 April 2014, 13:30:27 UTC | add examples to documentation, add object to data folder, and change loadIso name | 08 April 2014, 13:30:27 UTC |
| 631dc90 | lorena.pantano@gmail.com | 04 April 2014, 07:17:28 UTC | adding plsda function | 04 April 2014, 07:17:28 UTC |
| b2cff0a | Lorena | 24 March 2014, 10:04:12 UTC | Update README.md | 24 March 2014, 10:04:12 UTC |
| 305fa2e | Lorena | 13 March 2014, 14:40:47 UTC | update links | 13 March 2014, 14:40:47 UTC |
| f232db8 | Lorena | 13 March 2014, 14:38:49 UTC | Update README.md | 13 March 2014, 14:38:49 UTC |
| ae935e7 | Lorena Pantano | 12 March 2014, 09:55:24 UTC | issue 13. removing svn folders | 12 March 2014, 09:55:24 UTC |
| f63a67c | Lorena Pantano | 11 March 2014, 07:47:36 UTC | read all sequences even if it has N | 11 March 2014, 07:47:36 UTC |
| 71ef9d1 | Lorena Pantano | 03 March 2014, 12:44:40 UTC | add makecounts function | 03 March 2014, 12:44:40 UTC |
| 28cd30a | Lorena Pantano | 26 February 2014, 12:11:42 UTC | update documentation and some minor bugs in t5 collapse.table | 26 February 2014, 12:11:42 UTC |
| 80fd63b | Lorena Pantano | 25 February 2014, 12:08:44 UTC | add some information in DESCRIPTION/NAMESPACE and vignettes | 25 February 2014, 12:08:44 UTC |
| 32cb29a | Lorena Pantano | 24 February 2014, 12:18:31 UTC | update files to be ignored | 24 February 2014, 12:18:31 UTC |
| c6894b7 | Lorena Pantano | 24 February 2014, 12:18:13 UTC | adding new documentation for R package | 24 February 2014, 12:18:13 UTC |
| 5c7acec | Lorena Pantano | 24 February 2014, 12:14:11 UTC | -freq and -pre parameters. Whether to print frequency and sequences mapped to precursor and not mature miRNA | 24 February 2014, 12:14:11 UTC |
| 63a39bd | Lorena Pantano | 24 February 2014, 12:13:22 UTC | cleaning code to get check return code 0 | 24 February 2014, 12:13:22 UTC |
| 0fb3468 | Lorena Pantano | 21 February 2014, 13:19:52 UTC | adding DE, plotIso, and documentation | 21 February 2014, 13:19:52 UTC |
| ca0abe5 | Lorena Pantano | 21 February 2014, 06:41:11 UTC | problems with indent | 21 February 2014, 06:41:11 UTC |
| 4275bc3 | Lorena Pantano | 21 February 2014, 06:31:30 UTC | solving merge problems | 21 February 2014, 06:31:30 UTC |
| 8e5991f | Lorena Pantano | 21 February 2014, 06:23:50 UTC | minor changes to script | 21 February 2014, 06:23:50 UTC |
| b4d1cd3 | Lorena Pantano | 20 February 2014, 12:21:50 UTC | merging with misc | 20 February 2014, 12:21:50 UTC |
| b81aa27 | Lorena Pantano | 20 February 2014, 12:19:13 UTC | adding test file to misc | 20 February 2014, 12:19:13 UTC |
| c7a365d | Lorena Pantano | 20 February 2014, 06:36:26 UTC | showing only the most abundance loci when pipeline stopped resolving the cluster | 20 February 2014, 06:36:26 UTC |
| dd2c671 | Lorena Pantano | 19 February 2014, 13:22:59 UTC | fixing value of option show. TRUE by default | 19 February 2014, 13:22:59 UTC |
| 0e6d12f | Lorena Pantano | 19 February 2014, 13:13:31 UTC | adding option to avoid show step | 19 February 2014, 13:13:31 UTC |
| 441d219 | Lorena Pantano | 19 February 2014, 07:33:26 UTC | stop if cluster bigger than 500 . good code | 19 February 2014, 07:33:26 UTC |
| 78240e0 | Lorena Pantano | 19 February 2014, 07:15:35 UTC | stop if cluster bigger than 500 | 19 February 2014, 07:15:35 UTC |
| 5d4a7ec | Lorena Pantano | 18 February 2014, 06:02:06 UTC | adding parse aligment to restore point | 18 February 2014, 06:02:06 UTC |
| 1bd809f | Lorena Pantano | 17 February 2014, 13:28:35 UTC | fix crash when loading restart point | 17 February 2014, 13:28:35 UTC |
| ff8db91 | Lorena Pantano | 17 February 2014, 12:58:27 UTC | adding logging information and restart point after first clustering done | 17 February 2014, 12:58:27 UTC |
| 732f6a8 | Lorena Pantano | 13 February 2014, 12:38:42 UTC | .gitignore | 13 February 2014, 12:38:42 UTC |
| f849746 | Lorena Pantano | 13 February 2014, 12:38:01 UTC | remove pyc files | 13 February 2014, 12:38:01 UTC |
| fa70fff | Lorena Pantano | 13 February 2014, 12:28:14 UTC | log created inside output folder | 13 February 2014, 12:28:14 UTC |
| 32146d4 | Lorena Pantano | 13 February 2014, 12:27:12 UTC | fix last update. Adding fake varible samplesname | 13 February 2014, 12:27:12 UTC |
| fc7a252 | Lorena Pantano | 13 February 2014, 12:24:57 UTC | add logging function | 13 February 2014, 12:24:57 UTC |
| 1120269 | Lorena Pantano | 10 February 2014, 13:15:15 UTC | add DE analysis and some other slots to class | 10 February 2014, 13:15:15 UTC |
| 298b58d | Lorena Pantano | 07 February 2014, 12:57:41 UTC | new code for R, and cleaning seqcluster | 07 February 2014, 12:57:41 UTC |
| adb84ea | Lorena Pantano | 07 February 2014, 12:55:40 UTC | addign minors fitures, and cleaning code | 07 February 2014, 12:55:40 UTC |
| d7cdf12 | Lorena Pantano | 04 February 2014, 08:04:31 UTC | fixing some annotation at 5 trimmin: problem when more than two nucleotides and upstream of reference miRNA | 04 February 2014, 08:04:31 UTC |
| 529582e | Lorena Pantano | 03 February 2014, 14:10:56 UTC | fixing annotation in 3'. Problem when addition happens | 03 February 2014, 14:10:56 UTC |
| 17e6dfa | Lorena Pantano | 29 January 2014, 12:34:44 UTC | cleaning some errors if out folder doesnt exists, adding R script to check quality of clusters | 29 January 2014, 12:34:44 UTC |
| 550cfd9 | Lorena Pantano | 13 January 2014, 08:48:20 UTC | some not important files for interface | 13 January 2014, 08:48:20 UTC |
| 47408ac | Lorena Pantano | 13 January 2014, 08:38:38 UTC | adding databases | 13 January 2014, 08:38:38 UTC |
| dc53c7f | Lorena Pantano | 13 January 2014, 08:28:34 UTC | fatal error at interface jar, and improved miRNA alignments at miraligner | 13 January 2014, 08:28:34 UTC |
