| 62a99a8 | jan-matthis | 02 July 2020, 14:59:00 UTC | Update README.md | 02 July 2020, 14:59:00 UTC |
| 1b6c383 | Nikola Jajcay | 28 May 2020, 11:39:39 UTC | switch histogram keyword `normed` to `density` | 28 May 2020, 11:57:15 UTC |
| 32db54f | kaandocal | 30 April 2020, 08:36:29 UTC | Fix for issue #68 with MPGenerator | 30 April 2020, 08:36:29 UTC |
| ff05982 | dgreenberg | 21 February 2020, 14:18:40 UTC | update installation instructions (#64) | 21 February 2020, 14:18:40 UTC |
| 1ef24d5 | Jan-Matthis | 15 February 2020, 16:59:27 UTC | Remove dependency_links (deprecated) | 15 February 2020, 16:59:27 UTC |
| b9ea4e1 | Jan-Matthis | 14 January 2020, 16:47:42 UTC | Redirect | 14 January 2020, 16:47:42 UTC |
| aca78d8 | Jan-Matthis | 14 January 2020, 16:23:58 UTC | Include images | 14 January 2020, 16:23:58 UTC |
| ad6cd57 | Jan-Matthis | 14 January 2020, 16:22:06 UTC | Add equations | 14 January 2020, 16:22:06 UTC |
| a8487fa | Jan-Matthis | 14 January 2020, 15:56:20 UTC | Adapt navigation | 14 January 2020, 15:56:20 UTC |
| 23febe4 | Jan-Matthis | 14 January 2020, 15:54:35 UTC | Update tutorial | 14 January 2020, 15:54:35 UTC |
| 1f54451 | pedro goncalves | 15 November 2019, 14:50:14 UTC | Update quickstart.ipynb | 15 November 2019, 14:50:14 UTC |
| 49a55ab | pedro goncalves | 15 November 2019, 14:35:57 UTC | info run time | 15 November 2019, 14:35:57 UTC |
| 91c5583 | pedro goncalves | 15 November 2019, 14:33:09 UTC | Update install.md | 15 November 2019, 14:33:09 UTC |
| 081ce3a | Jan-Matthis | 12 November 2019, 18:20:38 UTC | update links | 12 November 2019, 18:20:38 UTC |
| 75e9af8 | Jan-Matthis | 10 November 2019, 10:43:50 UTC | docstrings | 10 November 2019, 10:43:50 UTC |
| 791bec3 | Jan-Matthis | 10 November 2019, 10:38:01 UTC | update autodocs | 10 November 2019, 10:38:01 UTC |
| 0b9b720 | Jan-Matthis | 10 November 2019, 10:35:27 UTC | references | 10 November 2019, 10:35:27 UTC |
| 8a77a5a | Jan-Matthis | 09 November 2019, 16:10:35 UTC | Update README.md | 09 November 2019, 16:10:35 UTC |
| c9bdefd | Jan-Matthis | 09 November 2019, 16:09:44 UTC | update fig; fix tutorial link | 09 November 2019, 16:09:44 UTC |
| 1f9b5a8 | Jan-Matthis | 09 November 2019, 16:04:33 UTC | fix link | 09 November 2019, 16:04:33 UTC |
| 0b323f3 | Jan-Matthis | 09 November 2019, 16:03:53 UTC | fix links | 09 November 2019, 16:03:53 UTC |
| 13fc27b | Jan-Matthis | 09 November 2019, 16:02:38 UTC | update docs | 09 November 2019, 16:02:38 UTC |
| a660da4 | Jan | 09 November 2019, 13:11:24 UTC | add poisson distribution univariate (#62) * add poisson distribution univariate * add test for poisson | 09 November 2019, 13:11:24 UTC |
| 3301d96 | jan-matthis | 30 October 2019, 18:16:59 UTC | small changes to install instructions | 30 October 2019, 18:16:59 UTC |
| d9b3e19 | jan-matthis | 30 October 2019, 13:07:05 UTC | change into docs for deploy | 30 October 2019, 13:07:05 UTC |
| 58a38d3 | Jan-Matthis | 30 October 2019, 11:28:19 UTC | small doc fixes | 30 October 2019, 11:28:19 UTC |
| 48ddd80 | jan-matthis | 29 October 2019, 17:16:24 UTC | adding nbconvert | 29 October 2019, 17:16:24 UTC |
| bbd3171 | jan-matthis | 29 October 2019, 17:12:27 UTC | mkdocs instead of sphinx | 29 October 2019, 17:12:27 UTC |
| 1faab5b | Jan-Matthis | 29 October 2019, 16:32:51 UTC | mknotebooks dependency | 29 October 2019, 16:32:51 UTC |
| 26e5817 | Jan-Matthis | 29 October 2019, 16:31:23 UTC | new docs for delfi | 29 October 2019, 16:31:23 UTC |
| 71cccd4 | Jan-Matthis | 29 October 2019, 11:38:11 UTC | rename matplotlibrc | 29 October 2019, 11:38:11 UTC |
| 0ed8dcc | jan-matthis | 29 October 2019, 09:24:01 UTC | bump version | 29 October 2019, 09:24:01 UTC |
| 7dce74f | jan-matthis | 29 October 2019, 09:23:09 UTC | fix missing imports | 29 October 2019, 09:23:09 UTC |
| 1b16d5e | jan-matthis | 28 October 2019, 17:50:09 UTC | bumping version | 28 October 2019, 17:50:09 UTC |
| b0b4796 | jan-matthis | 28 October 2019, 17:49:46 UTC | removing python 3.7 style string formatting | 28 October 2019, 17:49:46 UTC |
| 36bc610 | jan-matthis | 28 October 2019, 15:11:22 UTC | bump version | 28 October 2019, 15:11:22 UTC |
| 056d9bf | jan-matthis | 28 October 2019, 15:10:31 UTC | adding matplotlibrc with defaults | 28 October 2019, 15:10:31 UTC |
| c561ba3 | jan-matthis | 28 October 2019, 15:05:21 UTC | adding samples_nd for plotting | 28 October 2019, 15:05:21 UTC |
| 7c46a19 | jan-matthis | 28 October 2019, 13:49:32 UTC | updating version bumping to 0.7.0 after major numerical improvements in previous commit | 28 October 2019, 13:49:32 UTC |
| 778d48c | dgreenberg | 28 October 2019, 13:46:45 UTC | numerical stability improvements * added batched cholesky factorization + tests of batched symbolic matrix ops * use cholesky decomposition to calculate log determinants of proposal posterior component precision for Gaussian and MoG proposals, this is more numerically stable than theano's determinant function as it stays in the log domain all the way through to the loss * fixed dtype and improved numerical conditioning in test * for APT with gauss proposals, calculate each proposal posterior precision twice, using the first run to calculate a diagonal conditioning matrix for the second run * correctly use square root of precision diagonal elements, change order of operations * properly normalize prior when using APT with prior_norm=True and mog or gaussian proposals * reuse prior samples when testing Gaussian proposals * extend timeout period for tests * add prior precision to posterior comp(s) for mog/gauss prop, numerical fixes for MoG prop, reuse prior samples and train on all rounds in MoG prop test * use minibatches for validation loss, use validation loss in atomic mdn test, warn when validation set size is not an integer multiple of minibatch size | 28 October 2019, 13:46:45 UTC |
| 3836168 | dgreenberg | 20 October 2019, 14:12:34 UTC | fix prior norm bug for snpec/APT with gauss or mogprop proposals. enable MoG proposals with train_on_all (#60) * fix prior norm bug for snpec/APT with gauss or mogprop proposals. *added ztrans method to gauss and mog density classes * added support for sample reuse to APT with mog proposals, updated test. * update tests to deal with units better | 20 October 2019, 14:12:34 UTC |
| 207f23e | dgreenberg | 17 October 2019, 00:04:07 UTC | added remotegenerator (#58) added ssh-based generator, new tests, cosmetic changes, new utils for remote function calls | 17 October 2019, 00:04:07 UTC |
| 628a0e5 | Jan | 16 October 2019, 22:44:43 UTC | fix input handling on gamma distribution eval method fixes errors related to row vs. column vs. 1D vectors | 16 October 2019, 22:44:43 UTC |
| 660f033 | dgreenberg | 10 September 2019, 12:14:51 UTC | add support for minimum diagonal precision values to mixtureprecisionsiayer, add test (#57) * add support for minimum diagonal precision values to mixtureprecisionslayer, add test * change MPGenerator to add support for pickling | 10 September 2019, 12:14:51 UTC |
| efe3709 | dgreenberg | 29 August 2019, 13:10:28 UTC | change defaults to immutable types (#56) | 29 August 2019, 13:10:28 UTC |
| 6676fc5 | jan-matthis | 29 August 2019, 12:37:33 UTC | update spec_dict to contain info about filter and pool_sizes (#55) | 29 August 2019, 12:37:33 UTC |
| 5c1d1ca | jan-matthis | 21 August 2019, 09:19:50 UTC | Adding Kaan | 21 August 2019, 09:19:50 UTC |
| 7bc90a3 | David Greenberg | 18 August 2019, 22:02:16 UTC | update affine bijections to deal with vector inputs. update test | 18 August 2019, 22:02:16 UTC |
| f8c92ec | dgreenberg | 16 August 2019, 11:55:12 UTC | updates to bijections and APT run methods (#54) update bijections to support pickling. update APT run methods to allow patience and monitor_every to be passed | 16 August 2019, 11:55:12 UTC |
| 2db5d67 | David Greenberg | 10 August 2019, 17:36:38 UTC | switch from lambdas to defs to support pickling | 10 August 2019, 17:36:50 UTC |
| c09d774 | David Greenberg | 10 August 2019, 17:36:20 UTC | print fractional epoch number when stopping | 10 August 2019, 17:36:50 UTC |
| 2c89c8e | dgreenberg | 08 August 2019, 15:02:05 UTC | Bijections (#53) Added a util for quickly defining bijections by name, along with inverses and log determinants of Jacobians. Added a test. | 08 August 2019, 15:02:05 UTC |
| f4e2ed5 | David Greenberg | 06 August 2019, 17:20:05 UTC | fix bug where validation loss was not always calculated when it should due to rounding errors | 06 August 2019, 17:20:05 UTC |
| 0bc453a | David Greenberg | 05 August 2019, 12:10:25 UTC | more input checking etc. for uniform distribution. | 05 August 2019, 12:10:25 UTC |
| 281e7ca | David Greenberg | 04 August 2019, 12:02:22 UTC | cast inputs to 2D, whitespace | 04 August 2019, 12:02:22 UTC |
| 629c3fc | David Greenberg | 02 August 2019, 19:33:40 UTC | fix error when evaluating marginal of uniform distribution | 02 August 2019, 19:33:40 UTC |
| 39d99a3 | jan-matthis | 18 July 2019, 19:50:05 UTC | increase version number to 0.6.2 | 18 July 2019, 19:50:05 UTC |
| de321a7 | jan-matthis | 18 July 2019, 19:46:52 UTC | fix atomic mdn loss | 18 July 2019, 19:46:52 UTC |
| 6d65409 | David Greenberg | 16 July 2019, 01:39:50 UTC | fix circular import due to type checking for MAFconditional (fixes #52) | 16 July 2019, 01:39:50 UTC |
| ef29b34 | dgreenberg | 14 July 2019, 18:17:30 UTC | docs, readme, sphnix conf (#51) *Automatically update user/repo data in sphinx conf.py using git commands, good for forks. *Update docs *Update readme to acknowledge SNL's existence *Bug fix for TransformedDistrubution using MAFconditional (which did not inherit from base class) | 14 July 2019, 18:17:30 UTC |
| 88bd214 | David Greenberg | 05 July 2019, 20:09:37 UTC | update documentation | 05 July 2019, 20:09:37 UTC |
| 28c4bff | dgreenberg | 05 July 2019, 11:16:18 UTC | New simulator and distribution classes for parameter space transformations (#50) Added new classes to support parameter space transformations for distributions and simulators. Added new tests for these classes. Added new check for inference methods: make sure mean/std are not None when using prior_norm. | 05 July 2019, 11:16:18 UTC |
| d2a6361 | Jan-Matthis | 03 July 2019, 17:36:54 UTC | increase version number to 0.6.1 | 03 July 2019, 17:36:54 UTC |
| 74ed3d9 | Jan-Matthis | 03 July 2019, 17:36:28 UTC | fix bug in gaussian distribution | 03 July 2019, 17:36:28 UTC |
| 431ddf2 | Jan-Matthis | 03 July 2019, 17:16:57 UTC | fixing seeding for MPGenerator | 03 July 2019, 17:16:57 UTC |
| 5a86ca2 | David Greenberg | 01 July 2019, 13:21:58 UTC | fix error for Gaussian marginals | 01 July 2019, 13:21:58 UTC |
| 5df61b7 | David Greenberg | 29 June 2019, 09:23:38 UTC | Merge branch 'master' of github.com:dgreenberg/delfi | 29 June 2019, 09:23:38 UTC |
| 588becb | David Greenberg | 29 June 2019, 09:09:38 UTC | add logistic distribution | 29 June 2019, 09:09:38 UTC |
| 3d4def1 | David Greenberg | 29 June 2019, 09:09:22 UTC | allow passing 1D arrays to Gaussian eval method | 29 June 2019, 09:09:22 UTC |
| 2ca6ca8 | David Greenberg | 26 June 2019, 10:54:50 UTC | Merge branch 'master' of github.com:mackelab/delfi | 26 June 2019, 10:54:50 UTC |
| 14cb0fa | dgreenberg | 26 June 2019, 10:54:25 UTC | slight restructuring of BaseInference.gen method to avoid using generator.summary.n_summary, which some summary stats might be missing (#49) | 26 June 2019, 10:54:25 UTC |
| 9e110a6 | David Greenberg | 26 June 2019, 10:36:45 UTC | Merge branch 'master' of github.com:mackelab/delfi | 26 June 2019, 10:36:45 UTC |
| 8203010 | David Greenberg | 25 June 2019, 14:48:04 UTC | slight restructuring of BaseInference.gen method to avoid using generator.summary.n_summary, which some summary stats might be missing | 25 June 2019, 14:48:04 UTC |
| 0f40278 | jan-matthis | 23 June 2019, 16:29:27 UTC | Change n_rounds default | 23 June 2019, 16:29:27 UTC |
| f484fea | dgreenberg | 27 May 2019, 11:40:19 UTC | update readme, fix test (#47) put the gpu check on the correct tests (cnn/rnn). update readme. | 27 May 2019, 11:40:19 UTC |
| d71cc44 | jan-matthis | 22 May 2019, 16:25:07 UTC | remove pypi install instructions from doc (#46) | 22 May 2019, 16:25:07 UTC |
| 25fe052 | dgreenberg | 21 May 2019, 19:03:31 UTC | Bug fix, documentation improvements, continuous integration updates (#45) * added documentation, update travis CI to ubuntu xenial and python 3.7 * update travis to use xvfb as intended (as of jan. 2019), see https://docs.travis-ci.com/user/gui-and-headless-browsers/#using-services-xvfb * increase timeout to 20 min * added option to print a period after each epoch to avoid CI timeouts in APT. correctly using the epochs_round method for MoG proposals. don't try to use travis_wait * only test rnn/cnn if we have a gpu * update requirements.txt to ease installation woes | 21 May 2019, 19:03:31 UTC |
| 131d75e | dgreenberg | 21 May 2019, 06:58:41 UTC | Merge pull request #44 from dgreenberg/master Update delfi to v6 | 21 May 2019, 06:58:41 UTC |
| bc91870 | David Greenberg | 21 May 2019, 06:57:00 UTC | increase version to 0.6.0 | 21 May 2019, 06:57:00 UTC |
| 8b3e8a3 | David Greenberg | 21 May 2019, 06:48:26 UTC | change from icml abstract-only link to arxiv link | 21 May 2019, 06:48:26 UTC |
| 8a4d6cb | David Greenberg | 20 May 2019, 19:24:32 UTC | correct link | 20 May 2019, 19:24:32 UTC |
| 70cccb1 | David Greenberg | 20 May 2019, 17:17:13 UTC | removed kernel test, removed reference to pyPI in installation.rst | 20 May 2019, 17:17:13 UTC |
| 8884af7 | David Greenberg | 20 May 2019, 16:45:14 UTC | add requirements.txt, and use it for travis CI | 20 May 2019, 16:45:14 UTC |
| a3760d2 | David Greenberg | 20 May 2019, 16:17:44 UTC | remove kernel from setup.py, update notebook to have correct graphs etc., no spurious output | 20 May 2019, 16:17:44 UTC |
| 57a263f | David Greenberg | 20 May 2019, 15:53:14 UTC | add authors/year for APT | 20 May 2019, 15:53:14 UTC |
| bbf89da | David Greenberg | 20 May 2019, 15:51:04 UTC | preparing fork for update of public code | 20 May 2019, 15:51:04 UTC |
| 90645b7 | jan-matthis | 05 November 2018, 15:20:38 UTC | reseed method | 05 November 2018, 15:20:38 UTC |
| d43db74 | jan-matthis | 05 November 2018, 15:03:56 UTC | Remove kSNPE | 05 November 2018, 15:03:56 UTC |
| 3f7d9a8 | jan-matthis | 05 November 2018, 14:52:14 UTC | Update .travis.yml Pins version of pytest-cov to 2.5 (z4r/python-coveralls#66) | 05 November 2018, 14:52:14 UTC |
| 4ae2749 | jan-matthis | 05 November 2018, 14:41:12 UTC | v0.5.1 * fixes to seeding * IndependentJoint distribution (replaces MixedDistribution) * Mixture of transformed Gaussians * updates to generators * utils/math | 05 November 2018, 14:41:12 UTC |
| aca89dc | jan-matthis | 12 June 2018, 12:08:33 UTC | bump version | 12 June 2018, 12:08:33 UTC |
| 419bbb3 | mnonnenm | 05 June 2018, 16:26:34 UTC | Merge pull request #31 from mnonnenm/component_copy adding transformed Gaussian (for element-wise log- and logit-transform) | 05 June 2018, 16:26:34 UTC |
| 6bb7d78 | mnonnenm | 05 June 2018, 16:12:04 UTC | Merge branch 'component_copy' of https://github.com/mnonnenm/delfi-1 into component_copy | 05 June 2018, 16:12:04 UTC |
| b8b2ead | mnonnenm | 05 June 2018, 16:08:38 UTC | adding 'transformed' Normal with log/logit-transformed vector entries - defines a flag for log- and logit-transformed vector entries - automatically transforms samples and computes correct densities - *not* meant for fitting, only for plotting ! | 05 June 2018, 16:08:38 UTC |
| cb21fd1 | mnonnenm | 04 June 2018, 12:39:12 UTC | Merge pull request #30 from mnonnenm/component_copy Update CDELFI.py | 04 June 2018, 12:39:12 UTC |
| 89f0927 | mnonnenm | 04 June 2018, 11:59:42 UTC | Update CDELFI.py updating replication of posterior components for CDELFI | 04 June 2018, 11:59:42 UTC |
| a305bdb | mnonnenm | 18 May 2018, 13:10:02 UTC | Merge pull request #25 from mnonnenm/master (more) stable proposal correction for CDELFI | 18 May 2018, 13:10:02 UTC |
| 5dd3802 | mnonnenm | 18 May 2018, 12:45:55 UTC | Update CDELFI.py pruning negligible MoG components before attempting to divide posterior estimate by proposal | 18 May 2018, 12:45:55 UTC |
| f5b359b | mnonnenm | 18 May 2018, 12:40:19 UTC | Update BaseMixture.py debugging BaseMixture.prune_negligible_components() | 18 May 2018, 12:40:19 UTC |
| 6959725 | mnonnenm | 05 April 2018, 14:53:32 UTC | Update CDELFI.py adding try-except in case CDELFI analytical correction breaks. Simply leaves the loop over rounds and returns everything up to the time of breaking. | 05 April 2018, 14:53:32 UTC |
