| 8655dca | Marvin Jens | 28 February 2017, 15:31:48 UTC | Merge pull request #10 from mschilli87/license_fix License fix merge | 28 February 2017, 15:31:48 UTC |
| 8e29543 | Marcel Schilling | 28 February 2017, 12:35:32 UTC | Merge branch 'master' into license_fix | 28 February 2017, 12:35:32 UTC |
| 3274a63 | Marvin Jens | 14 February 2017, 17:19:56 UTC | * removed conflicting license clause restricting commercial use, as reported by Rekado. | 14 February 2017, 17:19:56 UTC |
| 3db3787 | Marcel Schilling | 06 January 2017, 16:02:19 UTC | Clarify license statement in README (fixes #9) | 06 January 2017, 16:02:19 UTC |
| 5bb849f | mjens | 26 January 2016, 13:07:11 UTC | * fixed file basename as key in dictionary. Now uses absolute path. | 26 January 2016, 13:07:11 UTC |
| 037f9fd | Marvin Jens | 16 December 2015, 12:41:03 UTC | Merge pull request #7 from mschilli87/master added new command line switches to README | 16 December 2015, 12:41:03 UTC |
| 6d5f5b4 | Marvin Jens | 08 December 2015, 18:31:01 UTC | * fixed missing fasta_chunks and qfa_chunks in unmapped2anchors.py | 08 December 2015, 18:31:01 UTC |
| 3d36a82 | Marcel Schilling | 14 November 2015, 10:34:28 UTC | added new command line switches to README | 14 November 2015, 10:34:28 UTC |
| e910812 | Marvin Jens | 13 November 2015, 15:53:27 UTC | Merge pull request #6 from mschilli87/master adjusted merge_bed.py to new input format | 13 November 2015, 15:53:27 UTC |
| 49266ca | mjens | 13 November 2015, 15:33:15 UTC | * added FASTQ input support to unmapped2anchors.py as requested by Petar | 13 November 2015, 15:33:15 UTC |
| 387cace | Marcel Schilling | 12 November 2015, 16:13:04 UTC | adjusted merge_bed.py to new input format (-c flag restores old behaviour) | 12 November 2015, 16:13:04 UTC |
| 288fd1b | Marvin Jens | 12 November 2015, 12:49:19 UTC | Merge pull request #4 from mschilli87/master added reads support filter example awk code | 12 November 2015, 12:49:19 UTC |
| dfc1a88 | Marcel Schilling | 12 November 2015, 08:10:19 UTC | added reads support filter example awk code | 12 November 2015, 08:10:19 UTC |
| 371d2d3 | marvin-jens | 10 November 2015, 15:30:30 UTC | Merge pull request #2 from mschilli87/master I fixed some stuff in the command line help and docs | 10 November 2015, 15:30:30 UTC |
| ac06ddf | marvin-jens | 10 November 2015, 15:16:01 UTC | Merge pull request #1 from mschilli87/master added underscore to prefix description | 10 November 2015, 15:16:01 UTC |
| 182b33c | Marcel Schilling | 10 November 2015, 15:13:33 UTC | added command line reference for merge_bed.py | 10 November 2015, 15:13:33 UTC |
| a4173bd | Marcel Schilling | 10 November 2015, 15:10:07 UTC | fixed command line reference text alignment | 10 November 2015, 15:10:07 UTC |
| 9dfc5e7 | Marcel Schilling | 10 November 2015, 15:06:50 UTC | fixed typo in unmapped2anchors.py help: P-ermute --> permute | 10 November 2015, 15:06:50 UTC |
| 4801bef | Marcel Schilling | 10 November 2015, 14:54:41 UTC | fixed column name in text (tissue --> tissues) | 10 November 2015, 14:54:41 UTC |
| 8416d7d | Marcel Schilling | 10 November 2015, 14:37:25 UTC | added underscore to prefix description | 10 November 2015, 14:37:25 UTC |
| ed560ec | mjens | 10 November 2015, 13:41:03 UTC | * added command line reference for unmapped2anchors.py to docs | 10 November 2015, 13:41:03 UTC |
| b3dfeb3 | mjens | 10 November 2015, 13:36:16 UTC | * extended docs | 10 November 2015, 13:36:16 UTC |
| 63533a2 | mjens | 10 November 2015, 12:31:05 UTC | * cleaned up commandline help, made example code/usage robust to number of columns in output * added lots of documentation to markdown | 10 November 2015, 12:31:05 UTC |
| 39bcd48 | mjens | 09 November 2015, 17:27:51 UTC | * updated docs | 09 November 2015, 17:27:51 UTC |
| a69a3e2 | mjens | 09 November 2015, 15:55:04 UTC | * fixed the make clean target | 09 November 2015, 15:55:04 UTC |
| 3eb9094 | mjens | 09 November 2015, 15:40:55 UTC | * cleanup | 09 November 2015, 15:40:55 UTC |
| 8220a90 | mjens | 09 November 2015, 15:31:04 UTC | * forgotten file | 09 November 2015, 15:31:04 UTC |
| cbe7df1 | mjens | 09 November 2015, 15:11:37 UTC | Cleaner reporting, better tests * find_circ.py: - no longer output dubious splices with NO_UNIQ_BRIDGES by default switch --report_nobridges brings back old behaviour * unmapped2anchors.py: - replaced with improved version from SVN that can split FASTA input as well * test_data/Makefile - supoprts three targets now: cdr1as_test, hek_test and hek_test2 | 09 November 2015, 15:11:37 UTC |
| 027741b | mjens | 09 November 2015, 13:47:01 UTC | * working on improved test cases that also showcase use of newer commandline switches/better output naming, etc. | 09 November 2015, 13:47:01 UTC |
| 09d8f96 | mjens | 04 November 2015, 15:37:04 UTC | * more intelligent Exception catching around the find_circ main loop - now reports at which input line the exception was raised, helping to troubleshoot * modified test_data to a) not redirect stderr anymore but explicitely store reads in a separate file b) contain deliberately broken input to test the reporting feature | 04 November 2015, 15:37:04 UTC |
| cb2e526 | mjens | 02 November 2015, 10:03:50 UTC | * removed left-over, unnecessary import statement to local library code, found by Marcel | 02 November 2015, 10:03:50 UTC |
| 9636bb3 | mjens | 09 October 2015, 13:40:29 UTC | * fixed the broken chrom bounds check in indexed_fasta.get_data() | 09 October 2015, 13:40:29 UTC |
| fe50402 | mjens | 25 September 2015, 14:45:45 UTC | * added the more recent, much more useful merge_bed.py | 25 September 2015, 14:45:45 UTC |
| 4f2f0e1 | mjens | 15 September 2015, 16:52:26 UTC | * turned tests into a Makefile, included alignment vs genome as test | 15 September 2015, 16:52:26 UTC |
| 1819433 | mjens | 15 September 2015, 16:10:20 UTC | * fixed error in backporting v1.2 from SVN | 15 September 2015, 16:10:20 UTC |
| d3b0a12 | mjens | 15 September 2015, 15:22:50 UTC | * update PDF | 15 September 2015, 15:22:50 UTC |
| 0e951a1 | mjens | 15 September 2015, 15:08:14 UTC | * update the docs | 15 September 2015, 15:08:14 UTC |
| d431e04 | mjens | 15 September 2015, 15:03:19 UTC | * merged local SVN changes into git. Module code is now included in one py file | 15 September 2015, 15:03:19 UTC |
| 40da9f5 | mjens | 15 September 2015, 14:27:16 UTC | * turning the tar.gz package from circbase.org into a github repo first commit, README converted to markdown and PDF generated with pandoc | 15 September 2015, 14:27:16 UTC |
| 8a7a1ec | marvin-jens | 15 September 2015, 12:50:00 UTC | Initial commit | 15 September 2015, 12:50:00 UTC |
