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https://github.com/mikgroup/sigpy
06 April 2024, 02:00:06 UTC
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Revision Author Date Message Commit Date
6334860 Frank Ong 04 March 2019, 00:44:51 UTC Bump version: 0.1.0 → 0.1.0 04 March 2019, 00:44:51 UTC
d4d48e7 Frank Ong 04 March 2019, 00:44:45 UTC Add bumpversion setup config 04 March 2019, 00:44:45 UTC
916b1a3 Frank Ong 04 March 2019, 00:42:28 UTC Update README.rst 04 March 2019, 00:42:28 UTC
122b3cf Frank Ong 04 March 2019, 00:17:37 UTC Remove bin and benchmarks 04 March 2019, 00:17:37 UTC
b15a298 Frank Ong 04 March 2019, 00:10:46 UTC Merge pull request #12 from mikgroup/subtest Subtest 04 March 2019, 00:10:46 UTC
5f4d5f5 Frank Ong 03 March 2019, 23:22:44 UTC Rename doc to docs 03 March 2019, 23:23:00 UTC
7dd689a Frank Ong 03 March 2019, 23:16:07 UTC Autocast device and dtype for convolve linops 03 March 2019, 23:16:07 UTC
546ff45 Frank Ong 03 March 2019, 23:15:36 UTC Add warnings for conv to ensure same input devices and dtypes 03 March 2019, 23:15:36 UTC
ea17f66 Frank Ong 03 March 2019, 23:15:29 UTC Use subtests for linop 03 March 2019, 23:15:29 UTC
35dc627 Frank Ong 03 March 2019, 22:29:53 UTC Use subtests for interp 03 March 2019, 22:29:53 UTC
ed3bd35 Frank Ong 03 March 2019, 18:05:37 UTC Use subtests for test_block 03 March 2019, 18:06:03 UTC
51f453a Frank Ong 03 March 2019, 18:02:14 UTC Use subtests for test_alg 03 March 2019, 18:02:14 UTC
38a45c9 Frank Ong 03 March 2019, 07:55:51 UTC Suppress pbar in unittest 03 March 2019, 07:55:51 UTC
2317cad Frank Ong 03 March 2019, 07:44:20 UTC Remove empty line 03 March 2019, 07:44:20 UTC
4d687ca Frank Ong 03 March 2019, 07:42:16 UTC Fix pbar in jsense 03 March 2019, 07:42:16 UTC
0f3ca43 Frank Ong 03 March 2019, 07:41:36 UTC Fix test precond complex float warning 03 March 2019, 07:41:36 UTC
e5ea3a5 Frank Ong 03 March 2019, 07:38:05 UTC Fix show_pbar options 03 March 2019, 07:38:05 UTC
fa8e08d Frank Ong 03 March 2019, 07:35:22 UTC Fix maxeig progress bar 03 March 2019, 07:35:22 UTC
e2e96b8 Frank Ong 03 March 2019, 07:31:23 UTC Merge tests in test_app with subtests 03 March 2019, 07:31:23 UTC
e50c0d6 Frank Ong 03 March 2019, 07:25:31 UTC Fix show_pbar option not specified for MaxEig in L2ContrainedMin 03 March 2019, 07:25:31 UTC
baa0db2 Frank Ong 03 March 2019, 07:25:14 UTC Add .coverage to .gitignore 03 March 2019, 07:25:14 UTC
a40dd5e Frank Ong 03 March 2019, 07:24:17 UTC Fix mri linop test import 03 March 2019, 07:24:17 UTC
9384b7e Frank Ong 03 March 2019, 06:50:59 UTC Change travis to use unittest 03 March 2019, 06:50:59 UTC
3228169 Frank Ong 03 March 2019, 06:38:11 UTC Renamed tests from *_test.py to tests/test_*.py 03 March 2019, 06:38:11 UTC
6087459 Frank Ong 03 March 2019, 01:32:28 UTC Update README.rst 03 March 2019, 01:32:28 UTC
6aaf905 Frank Ong 03 March 2019, 01:29:48 UTC Update README.rst 03 March 2019, 01:29:48 UTC
a29ebd8 Frank Ong 02 March 2019, 07:08:33 UTC Merge pull request #11 from mikgroup/fix-sphinx Fix sphinx errors 02 March 2019, 07:08:33 UTC
5986e93 Frank Ong 02 March 2019, 06:59:49 UTC Add matplotlib to travis pip install 02 March 2019, 06:59:49 UTC
a88cb44 Frank Ong 02 March 2019, 06:56:59 UTC Fix more indents in docstring 02 March 2019, 06:56:59 UTC
d48df2b Frank Ong 02 March 2019, 06:54:05 UTC Fix indents in docstring 02 March 2019, 06:54:05 UTC
0fac584 Frank Ong 02 March 2019, 06:47:43 UTC Add sphinx_rtd_theme to travis pip install 02 March 2019, 06:47:43 UTC
6e767c9 Frank Ong 02 March 2019, 06:46:48 UTC Turn off nitpicking in sphinx build in travis 02 March 2019, 06:46:48 UTC
67a431b Frank Ong 02 March 2019, 06:44:19 UTC Add sphinx doc build to travis 02 March 2019, 06:44:19 UTC
e50a8b6 Frank Ong 01 March 2019, 07:55:57 UTC Update README.rst 01 March 2019, 07:55:57 UTC
5c575ea Frank Ong 01 March 2019, 07:55:13 UTC Fix Device docstring 01 March 2019, 07:55:13 UTC
b763c7b Frank Ong 01 March 2019, 07:52:07 UTC Update Readme to include links 01 March 2019, 07:52:07 UTC
86ed0ea Frank Ong 01 March 2019, 07:44:41 UTC Merge pull request #10 from mikgroup/flake8 Flake8 01 March 2019, 07:44:41 UTC
8ad68b7 Frank Ong 01 March 2019, 07:37:59 UTC Remove Python 3.7 from travis 01 March 2019, 07:37:59 UTC
d0b066e Frank Ong 01 March 2019, 07:35:03 UTC Add flake8 to travis 01 March 2019, 07:35:03 UTC
f7ee198 Frank Ong 01 March 2019, 07:33:38 UTC Wrap lines to <80 column long 01 March 2019, 07:33:38 UTC
ff474c7 Frank Ong 01 March 2019, 05:44:59 UTC Simplify requirements.txt 01 March 2019, 05:44:59 UTC
fc46c32 Frank Ong 01 March 2019, 05:43:14 UTC Fix typo in config 01 March 2019, 05:43:14 UTC
397bee2 Frank Ong 01 March 2019, 05:39:08 UTC Fix cudnn and nccl config flags 01 March 2019, 05:39:57 UTC
e43e003 Frank Ong 01 March 2019, 05:30:16 UTC flake remove unused variables 01 March 2019, 05:30:16 UTC
59bee88 Frank Ong 01 March 2019, 05:26:31 UTC flake remove unused imports 01 March 2019, 05:26:31 UTC
08517be Frank Ong 01 March 2019, 04:59:40 UTC Fix sim import 01 March 2019, 04:59:40 UTC
49ee6b4 Frank Ong 01 March 2019, 02:45:22 UTC autopep8 01 March 2019, 02:45:22 UTC
412fa93 Frank Ong 01 March 2019, 02:36:27 UTC Remove unused import in fourier 01 March 2019, 02:36:27 UTC
f09e4a4 Frank Ong 01 March 2019, 02:27:02 UTC Fix nufft doc string 01 March 2019, 02:27:02 UTC
eb31b9f Frank Ong 01 March 2019, 02:14:21 UTC Update doc requirements 01 March 2019, 02:14:49 UTC
627b14d Frank Ong 01 March 2019, 02:12:22 UTC Add python config to readthedoc again 01 March 2019, 02:12:22 UTC
9fe6b12 Frank Ong 01 March 2019, 02:06:49 UTC Remove python options completely from readthedocs config 01 March 2019, 02:06:49 UTC
4dd1b02 Frank Ong 01 March 2019, 02:05:15 UTC Remove python version in readthedocs config 01 March 2019, 02:05:15 UTC
79a7283 Frank Ong 01 March 2019, 02:02:01 UTC Add readthedocs config 01 March 2019, 02:03:22 UTC
34a3c11 Frank Ong 27 February 2019, 22:37:39 UTC Fix nufft scaling bug 27 February 2019, 22:37:44 UTC
3242269 Frank Ong 27 February 2019, 22:35:03 UTC Add distributed support to all MRI apps 27 February 2019, 22:35:06 UTC
af1db8e Frank Ong 27 February 2019, 05:12:32 UTC Add as type linear operator 27 February 2019, 22:35:06 UTC
b4a1070 Frank Ong 27 February 2019, 05:11:26 UTC Reuse nccl comm in Communicator There is a ~0.5s overhead of creating nccl comms. They are now saved for reuse in Communicator with the devices as hash key. 27 February 2019, 22:35:06 UTC
e8f2d8d Frank Ong 27 February 2019, 22:30:55 UTC Change nufft to do apodization, fft, and interpolation one-by-one. 27 February 2019, 22:30:55 UTC
ac317fb frankong 20 February 2019, 18:40:51 UTC Bump version to 0.1.0 20 February 2019, 18:40:51 UTC
dcd9e68 frankong 20 February 2019, 18:40:20 UTC Fix init 20 February 2019, 18:40:20 UTC
c67f248 frankong 20 February 2019, 17:06:41 UTC Bump version to 0.0.9 20 February 2019, 17:06:41 UTC
4acc0b2 frankong 20 February 2019, 17:04:29 UTC Move shepp logan from mri to core 20 February 2019, 17:04:29 UTC
b54bb06 frankong 20 February 2019, 16:59:44 UTC Add espirit ecalibration 20 February 2019, 17:00:07 UTC
564e24c Frank Ong 20 February 2019, 01:40:18 UTC Add Box Constraint proximal operator. 20 February 2019, 01:40:18 UTC
4c2f76f Frank Ong 30 January 2019, 01:54:05 UTC Remove elitist threshold from benchmark 30 January 2019, 01:54:05 UTC
97a9f04 Frank Ong 29 January 2019, 21:23:35 UTC Add nccl back to Communicator Communicator uses nccl when devices are all gpus. This requires an allgather of the device ids, which I assume is fast. 29 January 2019, 21:24:35 UTC
52ef324 Frank Ong 29 January 2019, 19:17:29 UTC Remove elitist threshold Did not support latest cupy because of const output. Not really useful, so removing it for now. 29 January 2019, 21:24:35 UTC
a8e3d6b Frank Ong 29 January 2019, 19:04:06 UTC Fix const cuda output issue for block to array functions Similar to gridding fix proposed by @kmjohnson3. 29 January 2019, 21:24:35 UTC
370a62d Frank Ong 29 January 2019, 17:58:45 UTC Make distributed Sense linop more efficient Move allreduce outside of batching to reduce the number of communication. 29 January 2019, 21:24:35 UTC
b94ad33 Frank Ong 29 January 2019, 17:58:45 UTC Make distributed Sense linop more efficient Move allreduce outside of batching to reduce the number of communication. 29 January 2019, 17:58:45 UTC
0b81e85 Frank Ong 28 January 2019, 22:16:04 UTC Fix communicator test in mri apps 28 January 2019, 22:16:18 UTC
87e33b3 Frank Ong 28 January 2019, 22:05:45 UTC Raise error when using communicator without mpi4py 28 January 2019, 22:05:45 UTC
d16871a Frank Ong 28 January 2019, 22:05:36 UTC Typo in docstring 28 January 2019, 22:05:36 UTC
5066a01 Frank Ong 28 January 2019, 22:03:33 UTC Remove reduce in jsense recon Remove reduce from jsense recon so that the app only deals with data sharding. Partioning and joining data is done outside, so they can be made consistent to each other. Before this commit, joining is done inside the apps, and partitioning is done outside. 28 January 2019, 22:03:33 UTC
29d98c2 Frank Ong 19 December 2018, 00:16:10 UTC Remove cupy from benchmark for clearer text output 27 January 2019, 01:53:27 UTC
224c222 Frank Ong 19 December 2018, 00:13:16 UTC Docstring format 27 January 2019, 01:53:27 UTC
1a78248 Frank Ong 19 December 2018, 00:12:56 UTC Add documentation to blocks_to_array and array_to_blocks 27 January 2019, 01:53:27 UTC
9b171b4 Frank Ong 18 December 2018, 23:42:05 UTC Change centered fft implementation to speed up 27 January 2019, 01:53:27 UTC
c148469 Frank Ong 18 December 2018, 23:33:40 UTC Add cupy to benchmark 27 January 2019, 01:53:27 UTC
7c73aae Frank Ong 25 January 2019, 06:58:05 UTC Add parallel computing support to JSense 25 January 2019, 06:58:05 UTC
f39c9b3 Frank Ong 25 January 2019, 06:57:09 UTC Clean up communicator Remove nccl (multi-gpu specific) communicator for now. 25 January 2019, 06:57:09 UTC
06dc4ab Frank Ong 24 January 2019, 00:28:00 UTC Allow comm option in MRI apps to pass to Sense Linop. 24 January 2019, 00:28:00 UTC
b94e7e4 Frank Ong 23 January 2019, 23:53:07 UTC Add communicator to Sense linear operator. When a communicator is passed to the Sense operator, an AllReduceAdjoint Linop is prepended to the resulting linear operator. So when A.H is called the coil images are summed between all MPI nodes in the last step. This will be used in distributed reconstruction. 24 January 2019, 00:00:45 UTC
8f87bea Frank Ong 23 January 2019, 23:35:10 UTC Fix Sense linop docstring 23 January 2019, 23:35:10 UTC
7913387 Frank Ong 23 January 2019, 23:28:10 UTC Add reduce to communicator 23 January 2019, 23:28:10 UTC
26d970f Frank Ong 23 January 2019, 22:11:31 UTC Update codecov.yml 23 January 2019, 22:11:31 UTC
685f4ec Frank Ong 23 January 2019, 21:57:19 UTC Merge branch 'jtamir-master' 23 January 2019, 21:57:19 UTC
2ba216a Frank Ong 23 January 2019, 21:55:46 UTC Merge branch 'master' of https://github.com/jtamir/sigpy into jtamir-master 23 January 2019, 21:55:46 UTC
b8d6f47 Frank Ong 23 January 2019, 21:52:20 UTC Fix missing input in gridding_cuda 23 January 2019, 21:52:20 UTC
a33173f Frank Ong 23 January 2019, 21:26:17 UTC Merge pull request #8 from kmjohnson3/cupy_const_updates Cupy const updates 23 January 2019, 21:26:17 UTC
6906b61 Frank Ong 16 January 2019, 23:34:02 UTC Merge pull request #6 from chrsandino/patch-1 Remove reference to self.weights in objective() 16 January 2019, 23:34:02 UTC
ceb2dba Frank Ong 16 January 2019, 22:47:07 UTC Use more iterations in app test 16 January 2019, 22:47:07 UTC
52ed047 Frank Ong 16 January 2019, 22:46:45 UTC Remove redundant calculation in alg 16 January 2019, 22:46:45 UTC
d072239 Frank Ong 16 January 2019, 20:45:59 UTC Change gradient method docstring. 16 January 2019, 20:46:45 UTC
bfdc4f0 Frank Ong 16 January 2019, 20:40:56 UTC Fix travis pytest error 16 January 2019, 20:40:56 UTC
78e0f81 Frank Ong 16 January 2019, 20:28:06 UTC Add backtracking linesearch to GradientMethod Backtracking linesearch was implemented following the FISTA paper, and supported with and without proximal, and with and without acceleration. Linesearch is useful when the Lipschitz constant is unknown or cannot be calculated efficiently. For regularized least squares problems, linesearch may not be as useful because the Lipschitz constant can be estimated using the power method. 16 January 2019, 20:31:20 UTC
2bfe5ba Kevin M. Johnson 14 December 2018, 14:15:06 UTC Merge branch 'master' of https://github.com/mikgroup/sigpy into cupy_const_updates 14 December 2018, 14:15:06 UTC
857e444 Kevin M. Johnson 14 December 2018, 14:13:40 UTC Aiming to fix the const casting of inputs to cupy kernels. 14 December 2018, 14:13:40 UTC
1e4b55c frankong 09 November 2018, 18:32:30 UTC Update user guide 09 November 2018, 18:32:40 UTC
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