| bdb81d9 | Prakki Rama | 18 December 2023, 18:12:24 UTC | Rename Single-cell/loom_create.R to Single-cell/R/loom_create.R | 18 December 2023, 18:12:24 UTC |
| f26fdac | Prakki Rama | 18 December 2023, 18:11:52 UTC | Create loom_create.R | 18 December 2023, 18:11:52 UTC |
| 206a746 | Prakki Rama | 18 December 2023, 18:11:26 UTC | Create Readme.md | 18 December 2023, 18:11:26 UTC |
| 334eae7 | Prakki Rama | 19 February 2023, 16:14:35 UTC | Create Embellish_BarPlot.R | 19 February 2023, 16:14:35 UTC |
| 0bc58db | Prakki Rama | 12 February 2023, 14:24:12 UTC | Add files via upload | 12 February 2023, 14:24:12 UTC |
| d42e537 | Prakki Rama | 21 February 2022, 08:55:12 UTC | Update KAAS_Results_Table.pl | 21 February 2022, 08:55:12 UTC |
| 3f8bb1a | Prakki Rama | 21 February 2022, 08:50:41 UTC | Add files via upload | 21 February 2022, 08:50:41 UTC |
| d19f492 | Prakki Rama | 27 July 2021, 08:10:51 UTC | Create extract_putativeCircPlasmids.sh | 27 July 2021, 08:10:51 UTC |
| 18e7909 | Prakki Rama | 01 April 2021, 03:34:57 UTC | Update and rename Assemble_And_Order_GenomeContigs_fromBAM.md to readme.md | 01 April 2021, 03:34:57 UTC |
| 2f2f1d1 | Prakki Rama | 01 April 2021, 03:32:49 UTC | Create DenovoAssemble_fromBAM_AND_orderGenomeContigs.sh | 01 April 2021, 03:32:49 UTC |
| 6ad44f4 | Prakki Rama | 31 March 2021, 04:44:46 UTC | Create Assemble_And_Order_GenomeContigs_fromBAM.md | 31 March 2021, 04:44:46 UTC |
| c3979c4 | Prakki Rama | 03 February 2021, 01:18:35 UTC | Create Matrix2Table.R | 03 February 2021, 01:18:35 UTC |
| 900638c | Prakki Rama | 03 February 2021, 01:10:08 UTC | Create threeCol2Matrix.R | 03 February 2021, 01:10:08 UTC |
| a769268 | Prakki Rama | 28 January 2021, 05:03:49 UTC | Create rough_pipeline.sh | 28 January 2021, 05:03:49 UTC |
| fec6e5c | Prakki Rama | 21 January 2021, 08:11:27 UTC | Update dnaDist.r | 21 January 2021, 08:11:27 UTC |
| e8854d1 | Prakki Rama | 21 January 2021, 08:10:38 UTC | Add files via upload | 21 January 2021, 08:10:38 UTC |
| e7ae861 | Prakki Rama | 01 December 2020, 04:46:41 UTC | Update readme.md | 01 December 2020, 04:46:41 UTC |
| 6de736c | Prakki Rama | 01 December 2020, 04:37:24 UTC | Create readme.md | 01 December 2020, 04:37:24 UTC |
| 34135d3 | Prakki Rama | 01 December 2020, 04:36:20 UTC | Add files via upload | 01 December 2020, 04:36:20 UTC |
| 4a95e33 | Prakki Rama | 21 September 2020, 02:16:37 UTC | Update extractFlanking_fromCircSeq_v3.sh | 21 September 2020, 02:16:37 UTC |
| 50e3d00 | Prakki Rama | 21 September 2020, 02:15:08 UTC | Create extractFlanking_fromCircSeq_v3.sh | 21 September 2020, 02:15:08 UTC |
| 7aaa5dd | Prakki Rama | 28 August 2020, 05:01:47 UTC | Create bedtools.sh | 28 August 2020, 05:01:47 UTC |
| 29952cc | Prakki Rama | 28 August 2020, 05:01:16 UTC | Create skipOverlappingIntervals3.pl | 28 August 2020, 05:01:16 UTC |
| 2179563 | Prakki Rama | 23 August 2020, 08:41:19 UTC | Create bioconda_recipe | 23 August 2020, 08:41:19 UTC |
| 3ac4f0d | Prakki Rama | 20 August 2020, 05:21:13 UTC | Update splitNanoporeFasta.sh keeping depth | 20 August 2020, 05:21:13 UTC |
| bb02487 | Prakki Rama | 20 August 2020, 04:42:33 UTC | Create splitNanoporeFasta.sh | 20 August 2020, 04:42:33 UTC |
| b3e4e9e | Prakki Rama | 14 August 2020, 03:02:37 UTC | Update mob_typer_OnEachContig.sh | 14 August 2020, 03:02:37 UTC |
| 3fd0d93 | Prakki Rama | 10 August 2020, 10:07:34 UTC | Update packageCreation.R | 10 August 2020, 10:07:34 UTC |
| 525b4f6 | Prakki Rama | 10 August 2020, 09:56:46 UTC | Update packageCreation.R | 10 August 2020, 09:56:46 UTC |
| de3cddf | Prakki Rama | 10 August 2020, 05:52:34 UTC | Update packageCreation.R | 10 August 2020, 05:52:34 UTC |
| 67ed019 | Prakki Rama | 31 July 2020, 03:56:52 UTC | Create run_blast.sh | 31 July 2020, 03:56:52 UTC |
| 7a21922 | Prakki Rama | 31 July 2020, 03:51:57 UTC | Create run_blast.sh | 31 July 2020, 03:51:57 UTC |
| 6fcb6aa | Prakki Rama | 06 July 2020, 08:06:48 UTC | Update packageCreation.R | 06 July 2020, 08:06:48 UTC |
| cd01729 | Prakki Rama | 16 June 2020, 03:56:10 UTC | Update packageCreation.R | 16 June 2020, 03:56:10 UTC |
| 8255772 | Prakki Rama | 21 May 2020, 09:50:49 UTC | Create packageCreation.R | 21 May 2020, 09:50:49 UTC |
| aa4da28 | Prakki Rama | 18 May 2020, 09:02:32 UTC | Create binaryMat2dendrogram.R | 18 May 2020, 09:02:32 UTC |
| 0dd0395 | Prakki Rama | 14 May 2020, 03:02:50 UTC | Create Mash_Score.sh | 14 May 2020, 03:02:50 UTC |
| a702370 | Prakki Rama | 06 May 2020, 09:42:49 UTC | Update mob_typer_OnEachContig.sh added info | 06 May 2020, 09:42:49 UTC |
| 08a32ee | Prakki Rama | 06 May 2020, 09:39:22 UTC | Create mob_typer_OnEachContig.sh | 06 May 2020, 09:39:22 UTC |
| 352f2b4 | Prakki Rama | 05 May 2020, 12:18:14 UTC | Create mlplasmids_forloop.R | 05 May 2020, 12:18:14 UTC |
| 32361f2 | Prakki Rama | 13 April 2020, 03:39:26 UTC | Create arrangeCol2row.pl | 13 April 2020, 03:39:26 UTC |
| 185db3a | Prakki Rama | 13 April 2020, 03:34:16 UTC | Create splitFiles_incrementally.pl | 13 April 2020, 03:34:16 UTC |
| 1d72cf3 | Prakki Rama | 13 March 2020, 04:29:03 UTC | Create bootstrapping.sh | 13 March 2020, 04:29:03 UTC |
| d86461c | Prakki Rama | 05 February 2020, 03:04:29 UTC | Update circSeq_DupSeq_remover.sh added note | 05 February 2020, 03:04:29 UTC |
| 370a111 | Prakki Rama | 05 February 2020, 03:03:19 UTC | Rename findConnectedComponents.pl to ClustrPairs_v3.pl changed filename | 05 February 2020, 03:03:19 UTC |
| 742e562 | Prakki Rama | 05 February 2020, 03:00:40 UTC | Create findConnectedComponents.pl | 05 February 2020, 03:00:40 UTC |
| d7d4e30 | Prakki Rama | 05 February 2020, 02:19:41 UTC | Update circSeq_DupSeq_remover.sh | 05 February 2020, 02:19:41 UTC |
| 2f3b8d2 | Prakki Rama | 05 February 2020, 02:12:32 UTC | Update circSeq_DupSeq_remover.sh changed the logic of awk script | 05 February 2020, 02:12:32 UTC |
| 35c9873 | Prakki Rama | 05 February 2020, 02:10:46 UTC | Create circSeq_DupSeq_remover.sh | 05 February 2020, 02:10:46 UTC |
| ddb55a9 | Prakki Rama | 28 January 2020, 03:35:01 UTC | Update ClustrPairs.pl remove comment lines | 28 January 2020, 03:35:01 UTC |
| a118d74 | Prakki Rama | 28 January 2020, 03:33:56 UTC | Update ClustrPairs.pl added sort to array | 28 January 2020, 03:33:56 UTC |
| 47fa4e6 | Prakki Rama | 28 January 2020, 03:33:05 UTC | Create ClustrPairs.pl | 28 January 2020, 03:33:05 UTC |
| f161c07 | Prakki Rama | 27 December 2019, 02:00:06 UTC | Add files via upload | 27 December 2019, 02:00:06 UTC |
| 97cb175 | Prakki Rama | 29 November 2019, 09:21:30 UTC | Update Plasmidseeker_pull_AllPlasmids_v11_OC.pl Added to sort and pull the top hit | 29 November 2019, 09:21:30 UTC |
| 0c37a5b | Prakki Rama | 29 November 2019, 09:14:30 UTC | Update Plasmidseeker_pull_AllPlasmids_v11_OC.pl Added parallelization step for finding overlapping coefficient | 29 November 2019, 09:14:30 UTC |
| 4d7d9eb | Prakki Rama | 29 November 2019, 08:14:50 UTC | Create Plasmidseeker_pull_AllPlasmids_v11_OC.pl | 29 November 2019, 08:14:50 UTC |
| 5b331fa | Prakki Rama | 29 November 2019, 08:13:29 UTC | Create Align_circular_seq.sh | 29 November 2019, 08:13:29 UTC |
| 872ad8b | Prakki Rama | 14 October 2019, 06:49:42 UTC | Update Plasmidseeker_W-score_enhancement.pl | 14 October 2019, 06:49:42 UTC |
| 3f34a35 | Prakki Rama | 14 October 2019, 06:48:04 UTC | Update PlasmidSeeker_Wscore.sh | 14 October 2019, 06:48:04 UTC |
| 0aa38fd | Prakki Rama | 14 October 2019, 06:47:17 UTC | Create Plasmidseeker_W-score_enhancement.pl | 14 October 2019, 06:47:17 UTC |
| 40ff3ec | Prakki Rama | 14 October 2019, 06:44:50 UTC | Create PlasmidSeeker_Wscore.sh | 14 October 2019, 06:44:50 UTC |
| 950f6e3 | Prakki Rama | 14 October 2019, 06:43:53 UTC | Update Plasmidseeker_wrapper.pl added comments | 14 October 2019, 06:43:53 UTC |
| c54f60c | Prakki Rama | 14 October 2019, 06:24:22 UTC | Create Plasmidseeker_wrapper.pl | 14 October 2019, 06:24:22 UTC |
| a15bde2 | Prakki Rama | 14 October 2019, 06:23:41 UTC | Delete Plasmidseeker_wrapper.pl | 14 October 2019, 06:23:41 UTC |
| e6b6f3f | Prakki Rama | 14 October 2019, 06:23:18 UTC | Create Plasmidseeker_wrapper.pl | 14 October 2019, 06:23:18 UTC |
| 8e3bf56 | Prakki Rama | 02 July 2019, 06:53:42 UTC | Create SNP_Pipeline_2019_Nat_PC.sh | 02 July 2019, 06:53:42 UTC |
| df6b23e | Prakki Rama | 01 July 2019, 05:26:46 UTC | Update and rename SNP_Pipeline_2019_Datta_PC.sh to SNP_Pipeline_2019_Dat_PC.sh | 01 July 2019, 05:26:46 UTC |
| 4b51628 | Prakki Rama | 01 July 2019, 05:13:58 UTC | Update SNP_Pipeline_2019_Datta_PC.sh | 01 July 2019, 05:13:58 UTC |
| e27fc5b | Prakki Rama | 01 July 2019, 04:05:31 UTC | Create SNP_Pipeline_2019_Datta_PC.sh | 01 July 2019, 04:05:31 UTC |
| 4af04ca | Prakki Rama | 28 June 2019, 05:56:46 UTC | Update snps-sites_python.py | 28 June 2019, 05:56:46 UTC |
| 207161c | Prakki Rama | 28 June 2019, 05:56:24 UTC | Create snps-sites_python.py | 28 June 2019, 05:56:24 UTC |
| f396930 | Prakki Rama | 26 June 2019, 05:30:06 UTC | Update SNP_Pipeline_DavidE.pl | 26 June 2019, 05:30:06 UTC |
| 9563f55 | Prakki Rama | 26 June 2019, 04:58:12 UTC | Update SNP_Pipeline_DavidE.pl | 26 June 2019, 04:58:12 UTC |
| b39b7c6 | Prakki Rama | 24 June 2019, 07:10:43 UTC | Create SNP_Pipeline_DavidE.pl | 24 June 2019, 07:10:43 UTC |
| 28149b9 | Prakki Rama | 24 June 2019, 03:44:20 UTC | Update replaceAmbigousBases2N.pl added comments for clarity | 24 June 2019, 03:44:20 UTC |
| cb9ef5b | Prakki Rama | 24 June 2019, 03:34:22 UTC | Update replaceAmbigousBases2N.pl | 24 June 2019, 03:34:22 UTC |
| 08e06d3 | Prakki Rama | 24 June 2019, 03:19:10 UTC | Create replaceAmbigousBases2N.pl | 24 June 2019, 03:19:10 UTC |
| 00723ae | Prakki Rama | 20 June 2019, 03:06:15 UTC | Update SNP_Pipeline_2019.sh Ignore indel calling during samtools mpileup | 20 June 2019, 03:06:15 UTC |
| ec33ff6 | Prakki Rama | 12 June 2019, 02:55:38 UTC | Update SNP_Pipeline_2019.sh changed bedtools merge output | 12 June 2019, 02:55:38 UTC |
| 9f0ff21 | Prakki Rama | 11 June 2019, 09:35:16 UTC | Update SNP_Pipeline_2019.sh | 11 June 2019, 09:35:16 UTC |
| 099f02d | Prakki Rama | 11 June 2019, 09:03:18 UTC | Create SNP_Pipeline_2019.sh | 11 June 2019, 09:03:18 UTC |
| 7938ec5 | Prakki Rama | 14 December 2018, 06:40:24 UTC | Update UniqGnomicRegions.sh overcome the problem with bedtools sort | 14 December 2018, 06:40:24 UTC |
| dbac6bf | Prakki Rama | 22 October 2018, 05:12:27 UTC | Create plasmidseeker_v6_iNDM.pl | 22 October 2018, 05:12:27 UTC |
| 2b15e41 | Prakki Rama | 05 October 2018, 08:57:40 UTC | Create world_happiness_report.Rmd | 05 October 2018, 08:57:40 UTC |
| ff13295 | Prakki Rama | 05 October 2018, 08:14:52 UTC | Create ClustrPairs.R | 05 October 2018, 08:14:52 UTC |
| 0b00d91 | Prakki Rama | 05 October 2018, 02:41:35 UTC | Create readme.md | 05 October 2018, 02:41:35 UTC |
| 5537f98 | Prakki Rama | 05 October 2018, 02:24:26 UTC | Update Q30_stats.sh minor modifications | 05 October 2018, 02:24:26 UTC |
| f8fbda4 | Prakki Rama | 05 October 2018, 02:23:25 UTC | Create Q30_stats.sh | 05 October 2018, 02:23:25 UTC |
| 11b273a | Prakki Rama | 04 October 2018, 08:16:31 UTC | Create Plasmidseeker_pull_AllPlasmids_v9.pl This script instead of the longest sequence from each cluster takes all the sequences in the cluster as well as all high p-value plasmids from plasmidseeker output | 04 October 2018, 08:16:31 UTC |
| 801d4be | Prakki Rama | 04 October 2018, 04:46:14 UTC | Update Plasmidseeker_Pipeline_v8.pl changed name of the script. This script picks up the top longest sequence from cluster and all the high p-value plasmids | 04 October 2018, 04:46:14 UTC |
| ab30079 | Prakki Rama | 04 October 2018, 04:44:47 UTC | Create Plasmidseeker_Pipeline_v8.pl | 04 October 2018, 04:44:47 UTC |
| fcff14f | Prakki Rama | 04 October 2018, 03:53:09 UTC | Update README.md | 04 October 2018, 03:53:09 UTC |
| 73450f7 | Prakki Rama | 04 October 2018, 03:41:47 UTC | Rename UniqGnomicRegions.sh to Shell/UniqGnomicRegions.sh | 04 October 2018, 03:41:47 UTC |
| 3bd938b | Prakki Rama | 04 October 2018, 03:40:28 UTC | Rename uniq_Intersection_elements.pl to perl/uniq_Intersection_elements.pl | 04 October 2018, 03:40:28 UTC |
| 8b03f06 | Prakki Rama | 04 October 2018, 03:40:01 UTC | Rename intersect_lists.pl to perl/intersect_lists.pl | 04 October 2018, 03:40:01 UTC |
| 6b6e92e | Prakki Rama | 04 October 2018, 03:39:30 UTC | Rename PlasmidAssignment_Pipeline_v7.pl to plasmidseeker/PlasmidAssignment_Pipeline_v7.pl moved the file | 04 October 2018, 03:39:30 UTC |
| 1f032ba | Prakki Rama | 04 October 2018, 03:36:27 UTC | Create PlasmidAssignment_Pipeline_v4.pl | 04 October 2018, 03:36:27 UTC |
| d074e50 | Prakki Rama | 04 October 2018, 03:29:40 UTC | Create uniq_Intersection_elements.pl Find unique elements for each of the list and also common elements between the lists using perl | 04 October 2018, 03:29:40 UTC |
| 44ab61b | Prakki Rama | 03 October 2018, 04:49:30 UTC | Update intersect_lists.pl added sample data | 03 October 2018, 04:49:30 UTC |
| bb62e7e | Prakki Rama | 03 October 2018, 04:47:08 UTC | Update intersect_lists.pl removed testing portion | 03 October 2018, 04:47:08 UTC |
