https://github.com/rando2/foxmap

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Revision Author Date Message Commit Date
5a6eb20 Initial cleanup Needs additional review, but this is some cleanup to make it more applicable to other projects 23 April 2020, 13:08:34 UTC
efc02fa fixed typo 19 April 2019, 16:34:01 UTC
24f41a1 Fixed 15q and 5qp There was a bug where the pos on chromosome frag would reset to 0 when dog syntenic block was discontinuous. CSV is fixed now. 18 April 2019, 01:47:58 UTC
8707616 fixed bug in 5qp was non-continuous over dog syntenic break, fixed now 18 April 2019, 01:40:21 UTC
35a2c3d Made syntenic block identification more efficient Now it saves the active syntenic block information (match) among SNV on the same scaffold, until there's a reason to change it 08 March 2019, 23:02:45 UTC
ea08d89 Data file for vv2.2-vv2.4 conversion This csv file provides the locations of the vv2.2 fragments in the vv2.4 assembly 08 March 2019, 22:49:40 UTC
86b1c30 Convert VCF from vv2.2 to vv2.4 Copies a vcf file, updating positions from vv2.2 (scaffolds) to corresponding positions on the chromosome fragments 08 March 2019, 21:57:03 UTC
7cab110 Update README.md 08 February 2018, 20:35:47 UTC
2f2a4cc Update README.md 08 February 2018, 20:35:28 UTC
e490dda Updated ReadMe 08 February 2018, 20:31:47 UTC
018e0f0 removed default header from pycharm 08 February 2018, 20:24:47 UTC
bcdab97 Rename make-frags-clean.py to make-frags.py 08 February 2018, 20:24:15 UTC
f6686f0 Delete make-frags-final (new version uploaded) 08 February 2018, 20:23:56 UTC
88bc40f removed testing prints etc. 08 February 2018, 20:23:27 UTC
648781a added license 08 February 2018, 17:05:19 UTC
aea2d18 Update README.md 07 February 2018, 22:52:51 UTC
ce25855 Files for assembly from RACA Fragments 07 February 2018, 00:30:38 UTC
bdfedf4 Initial commit 12 October 2015, 13:08:47 UTC
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