| d20bd08 | Nicholas D. Socci | 16 October 2016, 18:16:31 UTC | Added MEMSIZE for mouse mapping removed -We | 16 October 2016, 18:16:31 UTC |
| e094117 | Nicholas D. Socci | 16 October 2016, 18:15:36 UTC | Added mouse and sgd+his4; also add MEMSIZE option for mouse | 16 October 2016, 18:15:36 UTC |
| 208918f | Nicholas D. Socci | 08 October 2016, 19:26:07 UTC | Added option for MEMSIZE; change default for mouse | 08 October 2016, 19:26:07 UTC |
| b8858c0 | Nicholas D. Socci | 08 October 2016, 18:48:01 UTC | Added mouse (mm10) genome | 08 October 2016, 18:48:01 UTC |
| eccd68e | Nicholas D. Socci | 08 October 2016, 18:24:48 UTC | Added GENOME arg to command line; and genome param dir | 08 October 2016, 18:24:48 UTC |
| bb3f369 | Nicholas D. Socci | 09 August 2016, 01:45:19 UTC | Added supplemental files | 09 August 2016, 01:45:19 UTC |
| 31f6e7b | Nicholas D. Socci | 09 August 2016, 01:44:53 UTC | Added gitignore | 09 August 2016, 01:44:53 UTC |
| 3b7996c | Nicholas D. Socci | 30 July 2016, 23:26:13 UTC | Switch genome to SGD+HIS4LEU2 | 30 July 2016, 23:26:13 UTC |
| 777f2c8 | Nicholas D. Socci | 26 July 2016, 00:14:42 UTC | Updated readme | 26 July 2016, 00:14:42 UTC |
| 4afb993 | Nicholas D. Socci | 25 July 2016, 17:36:11 UTC | Fix bug in log printout | 25 July 2016, 17:36:11 UTC |
| 9f9aa1e | Nicholas D. Socci | 25 July 2016, 16:52:23 UTC | Added argument to specify adapters | 25 July 2016, 16:52:23 UTC |
| b9b3185 | Nicholas D. Socci | 25 July 2016, 16:51:37 UTC | Added BASH script with adapter sequences | 25 July 2016, 16:51:37 UTC |
| 7bf9a4c | Nicholas D. Socci | 25 July 2016, 15:14:32 UTC | Script to process all samples in map file | 25 July 2016, 15:14:32 UTC |
| 1f8656b | Nicholas D. Socci | 24 July 2016, 22:08:52 UTC | Script to process all samples in MAP file | 24 July 2016, 22:08:52 UTC |
| 44467ef | Nicholas D. Socci | 24 July 2016, 22:08:29 UTC | Index unique BAM | 24 July 2016, 22:08:29 UTC |
| bfba356 | Nicholas D. Socci | 24 July 2016, 21:58:43 UTC | Full pipeline RC1 | 24 July 2016, 21:58:43 UTC |
| 6341320 | Nicholas D. Socci | 24 July 2016, 21:58:17 UTC | Added script to get unique BAM | 24 July 2016, 21:58:17 UTC |
| 4c75ba8 | Nicholas D. Socci | 24 July 2016, 21:57:59 UTC | Added merge hitmap Rscript | 24 July 2016, 21:57:59 UTC |
| 3b67e54 | Nicholas D. Socci | 24 July 2016, 20:47:52 UTC | Added stage 4: bam to hitmap | 24 July 2016, 20:47:52 UTC |
| 184470e | Nicholas D. Socci | 24 July 2016, 20:47:32 UTC | Added bam 2 hitmap script | 24 July 2016, 20:47:32 UTC |
| 0d994bd | Nicholas D. Socci | 24 July 2016, 20:16:52 UTC | Fixed thread count on map stage and added sort | 24 July 2016, 20:16:52 UTC |
| 2ad26b5 | Nicholas D. Socci | 24 July 2016, 20:16:20 UTC | added output file variable | 24 July 2016, 20:16:20 UTC |
| bd172a8 | Nicholas D. Socci | 24 July 2016, 20:05:05 UTC | GENOME_INDEX and map stage | 24 July 2016, 20:05:05 UTC |
| 5d80d95 | Nicholas D. Socci | 24 July 2016, 20:04:47 UTC | Add mapSHRiMP_SE script | 24 July 2016, 20:04:47 UTC |
| 91a0503 | Nicholas D. Socci | 24 July 2016, 19:53:36 UTC | Have clipping stage working | 24 July 2016, 19:53:36 UTC |
| f61c0c1 | Nicholas D. Socci | 24 July 2016, 19:52:48 UTC | Add bin and clipAdapter | 24 July 2016, 19:52:48 UTC |
| 1554b3a | Nicholas D. Socci | 24 July 2016, 19:15:39 UTC | Remove PEMapper submodule | 24 July 2016, 19:15:39 UTC |
| 8b6d159 | Nicholas D. Socci | 24 July 2016, 17:00:31 UTC | Added map stage | 24 July 2016, 17:00:31 UTC |
| 4e51733 | Nicholas D. Socci | 24 July 2016, 17:00:13 UTC | Fix bug in getReadLength.py path and also test if MINLENGTH already set | 24 July 2016, 17:00:13 UTC |
| 734fc8a | Nicholas D. Socci | 24 July 2016, 15:57:59 UTC | Added PEMapper submodule | 24 July 2016, 15:57:59 UTC |
| 5796e78 | Nicholas D. Socci | 24 July 2016, 15:51:34 UTC | initial checkin | 24 July 2016, 15:51:34 UTC |
