| 618128b | Toby Dylan Hocking | 24 January 2024, 18:48:29 UTC | fix for CRAN | 24 January 2024, 18:48:29 UTC |
| ae8ae04 | Toby Dylan Hocking | 16 December 2019, 05:05:32 UTC | Merge pull request #3 from Rishit-dagli/patch-1 Update DESCRIPTION | 16 December 2019, 05:05:32 UTC |
| fb3097a | Rishit Dagli | 06 December 2019, 12:16:33 UTC | Update DESCRIPTION Added URL and BugReports | 06 December 2019, 12:16:33 UTC |
| 0356a5f | Toby Dylan Hocking | 15 August 2017, 13:21:01 UTC | plot if interactive | 15 August 2017, 13:21:01 UTC |
| dffda99 | Toby Dylan Hocking | 15 August 2017, 13:16:17 UTC | only plot if interactive | 15 August 2017, 13:16:17 UTC |
| efdd00d | Toby Dylan Hocking | 15 August 2017, 13:14:05 UTC | remove binSum, add interface | 15 August 2017, 13:14:05 UTC |
| 04c5a80 | Toby Dylan Hocking | 15 August 2017, 12:30:18 UTC | version++ | 15 August 2017, 12:30:18 UTC |
| 3aca0fe | Toby Dylan Hocking | 14 August 2017, 14:08:47 UTC | PACKAGE= | 14 August 2017, 14:08:47 UTC |
| 1a340c4 | Toby Dylan Hocking | 21 June 2017, 12:19:22 UTC | Merge pull request #2 from tdhock/penaltyLearning depend penaltyLearning | 21 June 2017, 12:19:22 UTC |
| a3693c0 | Toby Dylan Hocking | 20 June 2017, 19:14:41 UTC | build.sh | 20 June 2017, 19:14:41 UTC |
| d67b5bf | Toby Dylan Hocking | 20 June 2017, 17:34:15 UTC | remove code coverage | 20 June 2017, 17:34:15 UTC |
| a382671 | Toby Dylan Hocking | 20 June 2017, 17:29:33 UTC | register routines | 20 June 2017, 17:29:33 UTC |
| c53a393 | Toby Dylan Hocking | 20 June 2017, 17:07:14 UTC | depend penaltyLearning | 20 June 2017, 17:07:14 UTC |
| 4e476f1 | Toby Dylan Hocking | 11 August 2016, 13:54:23 UTC | remove old var | 11 August 2016, 13:54:23 UTC |
| 72f74d3 | Toby Dylan Hocking | 06 August 2016, 22:27:46 UTC | Merge pull request #1 from tdhock/loss 1-logratio | 06 August 2016, 22:27:46 UTC |
| 335f9ea | Toby Dylan Hocking | 06 August 2016, 22:28:12 UTC | sugegst ggplot2 2.0 | 06 August 2016, 22:28:12 UTC |
| f2b1912 | Toby Dylan Hocking | 06 August 2016, 21:33:50 UTC | GeomTallRect | 06 August 2016, 21:33:50 UTC |
| 029b6e7 | Toby Dylan Hocking | 06 August 2016, 20:57:20 UTC | widerect ggplot2 2.0 | 06 August 2016, 20:57:20 UTC |
| 6aae020 | Toby Dylan Hocking | 06 August 2016, 20:29:12 UTC | doc update | 06 August 2016, 20:29:12 UTC |
| fd54820 | Toby Dylan Hocking | 06 August 2016, 20:28:43 UTC | var, val -> df | 06 August 2016, 20:28:43 UTC |
| 87b561d | Toby Dylan Hocking | 06 August 2016, 19:53:03 UTC | cleanup | 06 August 2016, 19:53:03 UTC |
| 3b09655 | Toby Dylan Hocking | 06 August 2016, 19:52:07 UTC | paper data ste | 06 August 2016, 19:52:07 UTC |
| 1de5ccf | Toby Dylan Hocking | 06 August 2016, 19:47:08 UTC | bugfix seg_end starts at seg_start not seg_i | 06 August 2016, 19:47:08 UTC |
| 747ea1d | Toby Dylan Hocking | 06 August 2016, 19:46:54 UTC | cDPA should return same cost as PoissonLoss | 06 August 2016, 19:46:54 UTC |
| 0aa2bee | Toby Dylan Hocking | 06 August 2016, 19:20:38 UTC | re-write cDPA | 06 August 2016, 19:20:38 UTC |
| 924699f | Toby Dylan Hocking | 06 August 2016, 17:53:32 UTC | example ggplot2 >=2.0 labeller | 06 August 2016, 17:53:32 UTC |
| 20a05f9 | Toby Dylan Hocking | 06 August 2016, 17:38:39 UTC | version++ | 06 August 2016, 17:38:39 UTC |
| a4f12cb | Toby Dylan Hocking | 06 August 2016, 17:37:26 UTC | remote PeakError | 06 August 2016, 17:37:26 UTC |
| 22b746b | Toby Dylan Hocking | 06 August 2016, 17:27:43 UTC | badges usage, related work | 06 August 2016, 17:27:43 UTC |
| 37de17d | Toby Dylan Hocking | 06 August 2016, 17:12:41 UTC | travis | 06 August 2016, 17:12:41 UTC |
| b9ae720 | Toby Dylan Hocking | 09 June 2016, 16:22:17 UTC | 1-logratio | 09 June 2016, 16:22:17 UTC |
| 6406abf | Toby Dylan Hocking | 20 November 2015, 21:39:20 UTC | link to PeakSegJoint | 20 November 2015, 21:39:20 UTC |
| 6520faa | Toby Dylan Hocking | 17 June 2015, 19:37:03 UTC | bases.per.bin -> bin.size | 17 June 2015, 19:37:03 UTC |
| fe06a5b | Toby Dylan Hocking | 07 April 2015, 13:44:51 UTC | remove multi from examples | 07 April 2015, 13:44:51 UTC |
| a4d3da4 | Toby Dylan Hocking | 07 April 2015, 13:41:22 UTC | move multiSampleSeg to tdhock/PeakSegJoint | 07 April 2015, 13:41:22 UTC |
| b5abc86 | Toby Dylan Hocking | 02 April 2015, 21:39:41 UTC | delete peaks.with.samples where undefined | 02 April 2015, 21:39:41 UTC |
| 99898b2 | Toby Dylan Hocking | 02 April 2015, 21:16:18 UTC | multiSampleSegSome | 02 April 2015, 21:16:18 UTC |
| 5a3b1e8 | Toby Dylan Hocking | 02 April 2015, 13:21:11 UTC | multiSampleSegZoom plugs memory leaks | 02 April 2015, 13:21:11 UTC |
| 477936c | Toby Dylan Hocking | 02 April 2015, 12:44:14 UTC | test heuristic results | 02 April 2015, 12:44:14 UTC |
| 6895bf2 | Toby Dylan Hocking | 01 April 2015, 21:24:18 UTC | first multiSampleSegSome code | 01 April 2015, 21:24:18 UTC |
| 14ba285 | Toby Dylan Hocking | 01 April 2015, 19:09:57 UTC | estimate times | 01 April 2015, 19:09:57 UTC |
| 9760809 | Toby Dylan Hocking | 01 April 2015, 15:29:25 UTC | default walltime 24 hours for prediction | 01 April 2015, 15:29:25 UTC |
| eab72d3 | Toby Dylan Hocking | 01 April 2015, 15:23:06 UTC | pass n.bins to binSum | 01 April 2015, 15:23:06 UTC |
| c509069 | Toby Dylan Hocking | 31 March 2015, 18:25:16 UTC | segmentBins maxSegments | 31 March 2015, 18:25:16 UTC |
| e08271c | Toby Dylan Hocking | 31 March 2015, 16:30:16 UTC | absolute data.dir | 31 March 2015, 16:30:16 UTC |
| 95fc8f8 | Toby Dylan Hocking | 31 March 2015, 15:30:17 UTC | typo | 31 March 2015, 15:30:17 UTC |
| 6035574 | Toby Dylan Hocking | 31 March 2015, 15:28:35 UTC | back to data.table | 31 March 2015, 15:28:35 UTC |
| 87af987 | Toby Dylan Hocking | 31 March 2015, 15:25:21 UTC | back to data.frame | 31 March 2015, 15:25:21 UTC |
| f573f48 | Toby Dylan Hocking | 31 March 2015, 15:20:27 UTC | use chrom in chromProblems | 31 March 2015, 15:20:27 UTC |
| 6b88b0b | Toby Dylan Hocking | 31 March 2015, 15:09:20 UTC | chromProblems fun | 31 March 2015, 15:09:20 UTC |
| 4d0f820 | Toby Dylan Hocking | 31 March 2015, 13:48:19 UTC | chromProblems function | 31 March 2015, 13:48:19 UTC |
| 7ae373e | Toby Dylan Hocking | 30 March 2015, 17:02:14 UTC | use 0 for non-finite test features | 30 March 2015, 17:02:14 UTC |
| c104b76 | Toby Dylan Hocking | 27 March 2015, 18:42:56 UTC | if last bin ends at last data point, do not add one bin | 27 March 2015, 18:42:56 UTC |
| 7c63cd3 | Toby Dylan Hocking | 27 March 2015, 15:03:14 UTC | normalizeDir, multiSampleSeg bugfix | 27 March 2015, 15:03:14 UTC |
| 5b60785 | Toby Dylan Hocking | 26 March 2015, 20:59:07 UTC | library, err bug fix | 26 March 2015, 20:59:07 UTC |
| 42dd59c | Toby Dylan Hocking | 26 March 2015, 20:46:07 UTC | Step4 | 26 March 2015, 20:46:07 UTC |
| 89f1f3e | Toby Dylan Hocking | 26 March 2015, 19:02:21 UTC | do not use generic qsub.id | 26 March 2015, 19:02:21 UTC |
| c6d99fd | Toby Dylan Hocking | 26 March 2015, 18:42:19 UTC | only use nonzero features to predict | 26 March 2015, 18:42:19 UTC |
| e13b272 | Toby Dylan Hocking | 26 March 2015, 17:39:23 UTC | combine and save peaks | 26 March 2015, 17:39:23 UTC |
| af1e3af | Toby Dylan Hocking | 26 March 2015, 16:59:34 UTC | step3 | 26 March 2015, 16:59:34 UTC |
| 33e6f1f | Toby Dylan Hocking | 26 March 2015, 16:45:06 UTC | segmentBins function shared between Steps 1 and 3 | 26 March 2015, 16:45:06 UTC |
| cdf4412 | Toby Dylan Hocking | 26 March 2015, 15:07:06 UTC | report sample.id | 26 March 2015, 15:07:06 UTC |
| 56e46fa | Toby Dylan Hocking | 26 March 2015, 15:02:29 UTC | only make figures for best resolution in step 2 | 26 March 2015, 15:02:29 UTC |
| 01eb553 | Toby Dylan Hocking | 26 March 2015, 13:36:29 UTC | allow noPeaks, report bad lines | 26 March 2015, 13:36:29 UTC |
| 8035ee4 | Toby Dylan Hocking | 25 March 2015, 22:47:16 UTC | write html report | 25 March 2015, 22:47:16 UTC |
| 42ba4ae | Toby Dylan Hocking | 25 March 2015, 21:02:14 UTC | step -> line | 25 March 2015, 21:02:14 UTC |
| ed8d007 | Toby Dylan Hocking | 25 March 2015, 20:48:05 UTC | make animint and png in step1 | 25 March 2015, 20:48:05 UTC |
| 9eda018 | Toby Dylan Hocking | 25 March 2015, 17:14:07 UTC | link to benchmark | 25 March 2015, 17:14:07 UTC |
| d2c804d | Toby Dylan Hocking | 25 March 2015, 17:11:33 UTC | clarify examples | 25 March 2015, 17:11:33 UTC |
| 83440c1 | Toby Dylan Hocking | 25 March 2015, 17:09:29 UTC | dir.create before plot | 25 March 2015, 17:09:29 UTC |
| 2d1b0ba | Toby Dylan Hocking | 25 March 2015, 17:02:13 UTC | save plots | 25 March 2015, 17:02:13 UTC |
| dd5bc37 | Toby Dylan Hocking | 25 March 2015, 16:43:21 UTC | README | 25 March 2015, 16:43:21 UTC |
| 4a31cb2 | Toby Dylan Hocking | 25 March 2015, 16:32:28 UTC | max.weight min.err | 25 March 2015, 16:32:28 UTC |
| e1a444b | Toby Dylan Hocking | 25 March 2015, 16:14:41 UTC | add 0 lines | 25 March 2015, 16:14:41 UTC |
| f5f7502 | Toby Dylan Hocking | 25 March 2015, 15:12:12 UTC | bugfix 1:nrow(chunk.df) | 25 March 2015, 15:12:12 UTC |
| aea5244 | Toby Dylan Hocking | 25 March 2015, 15:00:27 UTC | chunk.id complete | 25 March 2015, 15:00:27 UTC |
| ae30ab6 | Toby Dylan Hocking | 25 March 2015, 15:00:13 UTC | step 2 depends on step 1 | 25 March 2015, 15:00:13 UTC |
| 9be9244 | Toby Dylan Hocking | 25 March 2015, 14:59:04 UTC | oracle model complexity | 25 March 2015, 14:59:04 UTC |
| aa6fc0c | Toby Dylan Hocking | 25 March 2015, 13:35:08 UTC | AllSteps _residuals | 25 March 2015, 13:35:08 UTC |
| fb82144 | Toby Dylan Hocking | 24 March 2015, 21:25:55 UTC | select hyperparameter using weighted.error | 24 March 2015, 21:25:55 UTC |
| 4a5bda9 | Toby Dylan Hocking | 24 March 2015, 21:24:58 UTC | stop with error when all features have zero variance | 24 March 2015, 21:24:58 UTC |
| 587f83f | Toby Dylan Hocking | 24 March 2015, 20:42:25 UTC | usage | 24 March 2015, 20:42:25 UTC |
| 18d1e75 | Toby Dylan Hocking | 24 March 2015, 20:40:39 UTC | typo | 24 March 2015, 20:40:39 UTC |
| 60c3dd9 | Toby Dylan Hocking | 24 March 2015, 20:38:41 UTC | convert cell type labels in txt file to sample labels in bed file | 24 March 2015, 20:38:41 UTC |
| f369435 | Toby Dylan Hocking | 23 March 2015, 18:33:45 UTC | sample and chrom features | 23 March 2015, 18:33:45 UTC |
| 88609ce | Toby Dylan Hocking | 23 March 2015, 18:31:50 UTC | ratio features | 23 March 2015, 18:31:50 UTC |
| 8601b78 | Toby Dylan Hocking | 23 March 2015, 17:32:28 UTC | error code for empty bin | 23 March 2015, 17:32:28 UTC |
| c61a015 | Toby Dylan Hocking | 23 March 2015, 17:09:43 UTC | new data and binSum bugfix | 23 March 2015, 17:09:43 UTC |
| 24f6706 | Toby Dylan Hocking | 23 March 2015, 15:04:00 UTC | binSum error checking | 23 March 2015, 15:04:00 UTC |
| dd9d52d | Toby Dylan Hocking | 20 March 2015, 18:32:12 UTC | add one more bin to first step | 20 March 2015, 18:32:12 UTC |
| 7996388 | Toby Dylan Hocking | 20 March 2015, 18:31:54 UTC | back to unweighted code | 20 March 2015, 18:31:54 UTC |
| b2a3e5a | Toby Dylan Hocking | 20 March 2015, 18:14:29 UTC | weighted problems | 20 March 2015, 18:14:29 UTC |
| c17ba6f | Toby Dylan Hocking | 19 March 2015, 21:08:12 UTC | compute left right cumsum mats | 19 March 2015, 21:08:12 UTC |
| 0b1cd77 | Toby Dylan Hocking | 19 March 2015, 17:26:09 UTC | weighted first step | 19 March 2015, 17:26:09 UTC |
| f061f8d | Toby Dylan Hocking | 18 March 2015, 20:06:39 UTC | bug in R code fixed; cluster4 example | 18 March 2015, 20:06:39 UTC |
| da0b41f | Toby Dylan Hocking | 16 March 2015, 18:40:43 UTC | suggest microbenchmark | 16 March 2015, 18:40:43 UTC |
| 758ea63 | Toby Dylan Hocking | 16 March 2015, 18:39:31 UTC | multiSampleSeg example | 16 March 2015, 18:39:31 UTC |
| 36ae6de | Toby Dylan Hocking | 16 March 2015, 17:02:53 UTC | multiSampleSeg test passes | 16 March 2015, 17:02:53 UTC |
| 1108787 | Toby Dylan Hocking | 16 March 2015, 16:58:00 UTC | C code debugged | 16 March 2015, 16:58:00 UTC |
| cb069a0 | Toby Dylan Hocking | 16 March 2015, 15:40:58 UTC | R heuristic seems to be working | 16 March 2015, 15:40:58 UTC |
