| 3f55f04 | Tim Vaughan | 15 August 2023, 14:36:03 UTC | Fixed bug relating to "label"-valued styles. | 15 August 2023, 14:36:03 UTC |
| 66c732c | Tim Vaughan | 11 August 2023, 15:23:45 UTC | Keyboard shortcuts for style cycling. | 11 August 2023, 15:23:45 UTC |
| 36bb125 | Tim Vaughan | 11 August 2023, 14:51:34 UTC | Bug fix, notification on style change. | 11 August 2023, 14:51:34 UTC |
| 707fac2 | Tim Vaughan | 11 August 2023, 13:37:51 UTC | Added style saving/restoring. | 11 August 2023, 13:37:51 UTC |
| 0fc07ba | Tim Vaughan | 18 April 2023, 08:20:09 UTC | Upgraded papaparse and switched to non-minified version. | 18 April 2023, 08:20:09 UTC |
| e205440 | Tim Vaughan | 20 April 2022, 08:02:02 UTC | Added missing license for treeplots. | 20 April 2022, 08:02:02 UTC |
| 703553c | Tim Vaughan | 30 January 2022, 13:04:00 UTC | Removed use of CDNs for jquery, jquery-ui and plotly. | 30 January 2022, 13:04:00 UTC |
| ac27eca | Tim Vaughan | 27 May 2021, 13:29:27 UTC | Explicitly set foreground/background colours. | 27 May 2021, 13:29:27 UTC |
| 7aedf82 | Tim Vaughan | 20 November 2020, 14:50:43 UTC | Use local papaparse instead of CDN. | 20 November 2020, 14:50:43 UTC |
| b7a60f5 | Tim Vaughan | 16 November 2020, 16:12:21 UTC | Merge pull request #52 from chaoran-chen/metadata-import Add a function to attach external metadata files | 16 November 2020, 16:12:21 UTC |
| 46c8530 | Chaoran Chen | 16 November 2020, 15:12:52 UTC | Add a function to attach external metadata files | 16 November 2020, 15:12:52 UTC |
| 02e3a8c | Tim Vaughan | 30 June 2020, 09:40:10 UTC | Removed reload function. Necessary behaviour of FileReader has been removed by major browsers, so this no longer works. | 30 June 2020, 09:40:10 UTC |
| b55bf42 | Tim Vaughan | 11 June 2019, 09:35:05 UTC | Removed analytics. | 11 June 2019, 09:35:05 UTC |
| 554d0d3 | Tim Vaughan | 27 March 2019, 14:16:03 UTC | Reticulation nodes can now be coloured. | 27 March 2019, 14:16:03 UTC |
| e652567 | Tim Vaughan | 21 February 2019, 00:01:22 UTC | Fixed labeling problem when collapsing SA dummy nodes. | 21 February 2019, 00:01:22 UTC |
| 32d67cc | Tim Vaughan | 16 December 2018, 19:19:08 UTC | Added method to shuffle tree nodes. | 16 December 2018, 19:19:08 UTC |
| a57a05d | Tim Vaughan | 14 November 2018, 11:52:58 UTC | Updated description of zero length edge collapse option. | 14 November 2018, 11:52:58 UTC |
| 77d2354 | Tim Vaughan | 14 November 2018, 11:45:00 UTC | Fixed error in zero length edge removal. | 14 November 2018, 11:45:00 UTC |
| 0b676b9 | Tim Vaughan | 14 November 2018, 09:37:30 UTC | Zero-length edge collapsing now applies to all edges. | 14 November 2018, 09:37:30 UTC |
| 3a852b1 | Tim Vaughan | 12 July 2018, 10:04:20 UTC | Improved dash spacing with large edge widths. | 12 July 2018, 10:04:20 UTC |
| b83ce47 | Tim Vaughan | 25 June 2018, 11:14:36 UTC | Allow for empty annotations in Nexus. | 25 June 2018, 11:14:36 UTC |
| a49f6cc | Tim Vaughan | 25 June 2018, 11:13:04 UTC | Fixed formatting. | 25 June 2018, 11:13:04 UTC |
| ae7f2f9 | Tim Vaughan | 14 June 2018, 13:38:36 UTC | Temporary fix for bug in Chrome. Closes #49. Chrome is currently not properly respecting the non-scaling-stroke vector-effect on viewbox resizes. Arrrgh! | 14 June 2018, 14:24:22 UTC |
| faaa45c | Tim Vaughan | 08 June 2018, 15:35:47 UTC | Reinstated (optional) zero-length edge collapsing. | 08 June 2018, 15:35:47 UTC |
| f53b012 | Tim Vaughan | 25 May 2018, 13:44:57 UTC | More appropriate node mark sizing. | 25 May 2018, 13:44:57 UTC |
| c7bfe8e | Tim Vaughan | 18 May 2018, 21:23:00 UTC | Set plotly js to load asynchronously. | 18 May 2018, 21:23:00 UTC |
| ab84983 | Tim Vaughan | 18 May 2018, 15:11:27 UTC | Added drag+drop for tree strings (eg from IDE debug windows) | 18 May 2018, 15:11:27 UTC |
| 0d6e1cd | Tim Vaughan | 11 May 2018, 14:41:01 UTC | Fixed typo in function call. | 11 May 2018, 14:41:01 UTC |
| 898acdc | Tim Vaughan | 10 May 2018, 21:35:24 UTC | Added PhyloNet newick compatibility. Issue #48. This just strips out the additional colon-delimited annotations following branch length that phylonet uses for support etc. (In future could actually use these to annotate the tree, if we are sure that nothing else uses a syntactically similar but semantically different format.) | 10 May 2018, 21:35:24 UTC |
| bd40e1e | Tim Vaughan | 25 April 2018, 09:56:13 UTC | Improved error catching on url loading. Closes #47 | 25 April 2018, 09:56:13 UTC |
| a19705e | Tim Vaughan | 25 April 2018, 08:49:29 UTC | Added direct loading links to example files in manual. | 25 April 2018, 08:49:29 UTC |
| 7e4bd81 | Tim Vaughan | 16 April 2018, 12:58:01 UTC | Added context to parsing error message. | 16 April 2018, 12:58:01 UTC |
| 3a4e961 | Tim Vaughan | 16 April 2018, 11:41:05 UTC | Clean up div after display of rerooting warning. | 16 April 2018, 11:41:05 UTC |
| 151448d | Tim Vaughan | 16 April 2018, 11:33:04 UTC | Improved styling of error dialog. | 16 April 2018, 11:33:04 UTC |
| 5d48b14 | Tim Vaughan | 16 April 2018, 10:14:04 UTC | Replaced error screen with modal dialog. Allows error messages to actually be read and opens the door for more informative parsing errors. | 16 April 2018, 10:14:04 UTC |
| 6710409 | Tim Vaughan | 12 April 2018, 07:58:22 UTC | Added IP address anonymization to ga snippet. | 12 April 2018, 07:58:22 UTC |
| 8c0805b | Tim Vaughan | 21 March 2018, 12:39:47 UTC | Modified GET request url parsing. | 21 March 2018, 12:39:47 UTC |
| b473c54 | Tim Vaughan | 20 March 2018, 18:20:05 UTC | Fixed event bubbling issue. | 20 March 2018, 18:20:05 UTC |
| 57e3521 | Tim Vaughan | 20 March 2018, 18:13:10 UTC | Messing with events. | 20 March 2018, 18:13:10 UTC |
| 3d41541 | Tim Vaughan | 20 March 2018, 18:08:59 UTC | Added child order rotation. | 20 March 2018, 18:08:59 UTC |
| 67eaee5 | Tim Vaughan | 19 March 2018, 13:21:48 UTC | Updated manual. | 19 March 2018, 13:21:48 UTC |
| 41513d5 | Tim Vaughan | 15 March 2018, 14:19:17 UTC | Moved layouts into their own js file. | 15 March 2018, 14:19:17 UTC |
| f48e428 | Tim Vaughan | 15 March 2018, 14:17:38 UTC | Small change to relative edge width calculation. | 15 March 2018, 14:17:38 UTC |
| 6f39ca2 | Tim Vaughan | 14 March 2018, 17:34:29 UTC | Implemented trait-dependent edge-width scaling. | 14 March 2018, 17:34:29 UTC |
| 0a302af | Tim Vaughan | 14 March 2018, 15:51:39 UTC | Coloured nodes are only shown when trait is defined. | 14 March 2018, 15:51:39 UTC |
| 9c0f624 | Tim Vaughan | 14 March 2018, 12:49:57 UTC | Fixed vertical text alignment in legends. | 14 March 2018, 12:49:57 UTC |
| 95665b1 | Tim Vaughan | 14 March 2018, 12:39:20 UTC | Finally have vertically-centred node labels. | 14 March 2018, 12:39:20 UTC |
| 48927f7 | Tim Vaughan | 05 March 2018, 15:04:32 UTC | Removed zero-length edge stripping. Was a mistake. Should not attempt to interperate trees at a deeper level than what's explicitly there in the input data. | 05 March 2018, 15:04:32 UTC |
| ae35b0c | Tim Vaughan | 28 February 2018, 08:22:40 UTC | Switched horiz/vertical zoom keys. | 28 February 2018, 08:22:40 UTC |
| 623a2f2 | Tim Vaughan | 26 February 2018, 15:45:16 UTC | Avoiding irreversible font size changes. | 26 February 2018, 15:45:16 UTC |
| fe80e21 | Tim Vaughan | 16 February 2018, 09:00:30 UTC | Added option to smooth skyline plots. | 16 February 2018, 09:00:30 UTC |
| 1bf8602 | Tim Vaughan | 01 February 2018, 09:50:02 UTC | Fixed legend performance issue. | 01 February 2018, 09:50:02 UTC |
| 5dc592a | Tim Vaughan | 01 February 2018, 09:33:16 UTC | Improved rendering speed on Firefox. | 01 February 2018, 09:33:16 UTC |
| 2016bd1 | Tim Vaughan | 31 January 2018, 17:09:18 UTC | Nodes now drawn before text. Prevents text from being obscured by node marks. | 31 January 2018, 17:09:18 UTC |
| 11d1c57 | Tim Vaughan | 31 January 2018, 17:00:08 UTC | Added legend for node colours. | 31 January 2018, 17:00:08 UTC |
| f7f3837 | Tim Vaughan | 31 January 2018, 16:00:01 UTC | Added text to manual. | 31 January 2018, 16:00:01 UTC |
| a4ecf3a | Tim Vaughan | 31 January 2018, 15:56:03 UTC | Added keyboard shortcut and doc. | 31 January 2018, 15:56:03 UTC |
| 6b84792 | Tim Vaughan | 31 January 2018, 15:49:15 UTC | Node colours tentatively working. | 31 January 2018, 15:49:15 UTC |
| fb3e411 | Tim Vaughan | 31 January 2018, 08:54:30 UTC | Improved colour property/id names. | 31 January 2018, 08:54:30 UTC |
| fe7e0b7 | Tim Vaughan | 30 January 2018, 14:54:23 UTC | Working on node colouring. | 30 January 2018, 14:54:23 UTC |
| 20a8ceb | Tim Vaughan | 19 December 2017, 17:09:44 UTC | Improved documentation entry on URL loading. | 19 December 2017, 17:09:44 UTC |
| 930864e | Tim Vaughan | 19 December 2017, 16:12:50 UTC | Allowed passing tree file URLs via HTTP GET parameters. | 19 December 2017, 16:12:50 UTC |
| 5ef6c11 | Tim Vaughan | 19 December 2017, 13:40:44 UTC | Improved style of URL entry dialog. | 19 December 2017, 13:40:44 UTC |
| e710b90 | Tim Vaughan | 19 December 2017, 13:29:07 UTC | Implemented loading from URLs. | 19 December 2017, 13:29:07 UTC |
| ed2a33a | Tim Vaughan | 15 December 2017, 09:00:31 UTC | Added some node count statistics. | 15 December 2017, 09:00:31 UTC |
| 6f83e19 | Tim Vaughan | 13 December 2017, 19:21:24 UTC | Removed debug output. | 13 December 2017, 19:21:24 UTC |
| b778ce6 | Tim Vaughan | 13 December 2017, 19:19:45 UTC | Added epsilon optimization to skyline plot. | 13 December 2017, 19:19:45 UTC |
| 31bb831 | Tim Vaughan | 13 December 2017, 12:02:55 UTC | Fixed bugs in likelihood computation. | 13 December 2017, 12:02:55 UTC |
| cb19dfe | Tim Vaughan | 08 December 2017, 17:20:44 UTC | Playing with skyline implementation. | 08 December 2017, 17:20:44 UTC |
| 54876f7 | Tim Vaughan | 24 November 2017, 13:20:25 UTC | Fixed skyline plot on older Chrome versions. | 24 November 2017, 13:20:25 UTC |
| 7750cff | Tim Vaughan | 24 November 2017, 12:48:30 UTC | Added basic tree statistics. | 24 November 2017, 12:48:30 UTC |
| ad25f96 | Tim Vaughan | 30 August 2017, 07:34:09 UTC | Fixed interference with mac command key. | 30 August 2017, 07:34:09 UTC |
| 285e753 | Tim Vaughan | 18 August 2017, 21:21:59 UTC | Removed tabs from html. | 18 August 2017, 21:21:59 UTC |
| e862dae | Tim Vaughan | 18 August 2017, 21:07:08 UTC | Merge branch 'skyline' | 18 August 2017, 21:07:08 UTC |
| f4a77a4 | Tim Vaughan | 18 August 2017, 15:06:05 UTC | Added experimental warning to skyline plot dialog. | 18 August 2017, 15:06:05 UTC |
| c8ae1ea | Tim Vaughan | 16 August 2017, 09:35:15 UTC | Prevent browser scrollbars from ever appearing. | 17 August 2017, 10:25:02 UTC |
| aba9e1d | Tim Vaughan | 17 August 2017, 10:21:15 UTC | Messing with skyline code. | 17 August 2017, 10:21:15 UTC |
| 1fdd619 | Tim Vaughan | 16 August 2017, 09:35:15 UTC | Prevent browser scrollbars from ever appearing. | 16 August 2017, 09:35:45 UTC |
| 7186727 | Tim Vaughan | 16 August 2017, 08:57:25 UTC | Removed unused arguments from function declarations. | 16 August 2017, 08:57:25 UTC |
| 4b200bb | Tim Vaughan | 15 August 2017, 11:46:08 UTC | Updated manual. | 15 August 2017, 11:46:08 UTC |
| 4bb48fe | Tim Vaughan | 15 August 2017, 07:17:18 UTC | Added info buttons to ltt/skyline plots | 15 August 2017, 07:17:18 UTC |
| 4d446a9 | Tim Vaughan | 14 August 2017, 20:34:48 UTC | Generalized skyline code to properly handle multifurcations. | 14 August 2017, 20:34:48 UTC |
| 7429075 | Tim Vaughan | 14 August 2017, 16:12:17 UTC | Added skyline and ltt plots | 14 August 2017, 16:12:17 UTC |
| 9f43c29 | Tim Vaughan | 12 August 2017, 13:28:48 UTC | Close manual dialog on "open in new window". | 12 August 2017, 13:28:48 UTC |
| d992bef | Tim Vaughan | 22 May 2017, 21:25:05 UTC | More jslint fixes. | 22 May 2017, 21:29:23 UTC |
| 9fa9821 | Tim Vaughan | 22 May 2017, 21:15:05 UTC | Fixed jslint issues. | 22 May 2017, 21:15:05 UTC |
| c1254f2 | Tim Vaughan | 22 May 2017, 21:03:07 UTC | Fixed some jslint issues. | 22 May 2017, 21:03:07 UTC |
| 35f0f1b | Tim Vaughan | 12 May 2017, 04:08:58 UTC | Added name of current file to page title. | 12 May 2017, 04:08:58 UTC |
| 1afe864 | Tim Vaughan | 04 May 2017, 12:45:04 UTC | Fixed CSS bug. | 04 May 2017, 12:45:04 UTC |
| b86654f | Tim Vaughan | 04 May 2017, 12:39:51 UTC | Removed MathJax dependency. | 04 May 2017, 12:41:59 UTC |
| 196c171 | Tim Vaughan | 21 April 2017, 03:23:27 UTC | Report error when tree contains multiple roots. | 21 April 2017, 03:23:27 UTC |
| ab49335 | Tim Vaughan | 21 April 2017, 03:23:02 UTC | Fixed typo in manual. | 21 April 2017, 03:23:02 UTC |
| 0679662 | Tim Vaughan | 19 April 2017, 20:41:14 UTC | Clicking on citation link now opens new tab. | 19 April 2017, 20:41:14 UTC |
| 7cad880 | Tim Vaughan | 12 April 2017, 21:41:25 UTC | Added citation. | 12 April 2017, 21:41:25 UTC |
| e615fc5 | Tim Vaughan | 04 April 2017, 01:02:13 UTC | Fixed analytics tracking following custom domain. | 04 April 2017, 01:02:13 UTC |
| 1c32895 | Tim Vaughan | 28 March 2017, 23:07:14 UTC | Allows newlines in newick, improves error reporting. Issue #42. | 28 March 2017, 23:08:31 UTC |
| 1db795c | Tim Vaughan | 27 March 2017, 01:36:57 UTC | Resize starting image if window size is super small. | 27 March 2017, 01:37:55 UTC |
| a7ebd10 | Tim Vaughan | 22 March 2017, 23:26:45 UTC | Update CNAME | 22 March 2017, 23:26:45 UTC |
| 5296592 | Tim Vaughan | 22 March 2017, 23:26:28 UTC | Update CNAME | 22 March 2017, 23:26:28 UTC |
| 1320c09 | Tim Vaughan | 22 March 2017, 20:16:10 UTC | Updated URL. | 22 March 2017, 20:16:10 UTC |
