| 955d402 | Torsten Seemann | 12 May 2020, 03:36:00 UTC | Issue #138 - clarify summary uses percent covered | 12 May 2020, 03:36:00 UTC |
| 6456997 | Torsten Seemann | 19 April 2020, 11:59:24 UTC | Issue #135 | handle > 500 hits | 19 April 2020, 11:59:24 UTC |
| 53d40bb | Torsten Seemann | 27 March 2020, 23:05:48 UTC | fix test/fofn.txt | 27 March 2020, 23:05:48 UTC |
| 6b062ae | Torsten Seemann | 27 March 2020, 23:02:20 UTC | Bump to 1.0.0 | 27 March 2020, 23:02:20 UTC |
| 5b4bbc4 | Torsten Seemann | 27 March 2020, 23:01:49 UTC | Add message/motd after each run | 27 March 2020, 23:01:49 UTC |
| c4fa972 | Torsten Seemann | 27 March 2020, 22:47:12 UTC | Default --minid 80 --minvoc 80 | 27 March 2020, 22:47:12 UTC |
| b464c67 | Torsten Seemann | 27 March 2020, 22:13:39 UTC | #129 | add --fofn option | 27 March 2020, 22:13:39 UTC |
| 946981a | Torsten Seemann | 27 March 2020, 21:53:18 UTC | #128 | fail when HTTP download fails | 27 March 2020, 21:53:18 UTC |
| 8acb725 | Torsten Seemann | 27 March 2020, 21:52:42 UTC | Update NCBI db | 27 March 2020, 21:52:42 UTC |
| 0edbf72 | Torsten Seemann | 27 March 2020, 21:52:28 UTC | #128 | whoops forgot to add MEGARES db | 27 March 2020, 21:52:28 UTC |
| e439aba | Torsten Seemann | 27 March 2020, 21:37:59 UTC | #127 | fix consolidated DB builder | 27 March 2020, 21:37:59 UTC |
| 268bf7c | Torsten Seemann | 04 March 2020, 23:11:50 UTC | CARD db - Narch 2020 update | 04 March 2020, 23:11:50 UTC |
| f7dbc25 | Torsten Seemann | 20 February 2020, 02:17:34 UTC | travis: fix unable to build DB_file | 20 February 2020, 02:17:34 UTC |
| 165d153 | Torsten Seemann | 20 February 2020, 02:13:58 UTC | add more megares links to docs | 20 February 2020, 02:13:58 UTC |
| e88e63a | Torsten Seemann | 20 February 2020, 02:10:34 UTC | Add megares to docs intro | 20 February 2020, 02:10:34 UTC |
| 3a10d35 | Torsten Seemann | 20 February 2020, 01:59:33 UTC | Bump to 0.9.9 | 20 February 2020, 01:59:33 UTC |
| 545eebc | Torsten Seemann | 20 February 2020, 01:55:27 UTC | Issue #120 - fix ncbi ref, add megares | 20 February 2020, 01:55:27 UTC |
| d3aca1c | Torsten Seemann | 20 February 2020, 00:14:38 UTC | Issue #123 - support MEGARES 2.00 | 20 February 2020, 00:14:38 UTC |
| 358bd89 | Torsten Seemann | 19 February 2020, 23:36:04 UTC | Update NCBI DB to 2020-01-22.1 | 19 February 2020, 23:36:04 UTC |
| b55ece0 | Torsten Seemann | 19 February 2020, 23:35:31 UTC | Update to new NCBI AMRFinderPlus URL | 19 February 2020, 23:35:31 UTC |
| 35f5ea8 | Torsten Seemann | 27 October 2019, 08:10:27 UTC | Add EcOH to DB citations | 27 October 2019, 08:10:27 UTC |
| aebf6af | Torsten Seemann | 27 October 2019, 08:07:10 UTC | Correct some older docs | 27 October 2019, 08:07:10 UTC |
| d8f510f | Torsten Seemann | 27 October 2019, 08:02:56 UTC | Document both --summary modes | 27 October 2019, 08:02:56 UTC |
| c943bfc | Torsten Seemann | 27 October 2019, 07:58:39 UTC | Issue #118 | document COVERAGE_MAP | 27 October 2019, 07:58:39 UTC |
| e4331df | Torsten Seemann | 24 October 2019, 00:20:57 UTC | Update to CARD 3.0.6-Ooct_Patch | 24 October 2019, 00:20:57 UTC |
| 18187ca | Torsten Seemann | 18 October 2019, 00:36:07 UTC | Sort drug resistances | 18 October 2019, 00:36:07 UTC |
| e5f76c4 | Torsten Seemann | 06 October 2019, 22:05:41 UTC | Fix CARD accession coordinates | 06 October 2019, 22:07:55 UTC |
| 174ce8e | Torsten Seemann | 06 October 2019, 21:48:00 UTC | Issue #115 | missed hits when blast stderr occurs | 06 October 2019, 21:48:00 UTC |
| 7a18cc9 | Torsten Seemann | 29 September 2019, 03:00:10 UTC | check for correct protein blast tool | 29 September 2019, 03:00:10 UTC |
| f68bdc0 | Torsten Seemann | 27 September 2019, 02:21:27 UTC | Update CARD September 2019 | 27 September 2019, 02:21:27 UTC |
| 8688822 | Torsten Seemann | 27 September 2019, 01:52:06 UTC | Update database format desc | 27 September 2019, 01:52:06 UTC |
| 862840b | Torsten Seemann | 27 September 2019, 01:41:16 UTC | docs: OSX -> MacOS | 27 September 2019, 01:41:16 UTC |
| 8fbc182 | Torsten Seemann | 27 September 2019, 01:14:53 UTC | Add database citations | 27 September 2019, 01:14:53 UTC |
| da1f82f | Torsten Seemann | 27 September 2019, 00:52:32 UTC | Fix/update deps in docs | 27 September 2019, 00:52:32 UTC |
| 1a8d6bb | Torsten Seemann | 27 September 2019, 00:12:53 UTC | Remove old deps from docs | 27 September 2019, 00:12:53 UTC |
| 8dae7eb | Torsten Seemann | 10 September 2019, 11:00:25 UTC | Issue #108 | ignore heading in --db from --list | 10 September 2019, 11:00:25 UTC |
| 336e3b0 | Torsten Seemann | 10 September 2019, 10:54:47 UTC | CARD ensure is AMR Gene Family | 10 September 2019, 10:54:47 UTC |
| 56be55b | Torsten Seemann | 10 September 2019, 10:39:01 UTC | Issue #106 | use phenotypes.txt for resfinder RESISTACE col | 10 September 2019, 10:40:37 UTC |
| 2f14e10 | Torsten Seemann | 10 September 2019, 09:23:24 UTC | Issue #66 | update plasmidfinder source and db | 10 September 2019, 09:23:24 UTC |
| c400976 | Torsten Seemann | 10 September 2019, 08:58:18 UTC | Issue #32 | fix summary in 1 file case, Dutch mode | 10 September 2019, 08:58:18 UTC |
| 5b8551e | Torsten Seemann | 10 September 2019, 00:22:18 UTC | Issue #103 | ensure no spaces in ~~~RESISTANCE | 10 September 2019, 00:22:18 UTC |
| f5d8a4e | Torsten Seemann | 09 September 2019, 22:40:07 UTC | More TRAVIS tests | 09 September 2019, 22:40:07 UTC |
| 56aefc5 | Torsten Seemann | 09 September 2019, 22:37:58 UTC | warning is actually error | 09 September 2019, 22:37:58 UTC |
| c1d19a7 | Torsten Seemann | 09 September 2019, 22:13:49 UTC | Issue #84 | fix --summary w/ --nopath | 09 September 2019, 22:13:49 UTC |
| 0f1cd0d | Torsten Seemann | 09 September 2019, 21:54:14 UTC | ensure --summary has 2+ files to use | 09 September 2019, 21:54:14 UTC |
| 4667057 | Torsten Seemann | 09 September 2019, 21:53:19 UTC | use basename instead of custom func | 09 September 2019, 21:53:19 UTC |
| 99a2757 | Torsten Seemann | 09 September 2019, 20:57:03 UTC | Issue #102 | wrong deb pkg for path::tiny | 09 September 2019, 20:57:03 UTC |
| d9e1a49 | Torsten Seemann | 07 September 2019, 12:43:36 UTC | Missing cell in RESISTANCE docs | 07 September 2019, 12:43:36 UTC |
| 90fa9c0 | Torsten Seemann | 07 September 2019, 12:37:00 UTC | Issue #9 #68 | add RESISTANCE column | 07 September 2019, 12:37:00 UTC |
| 62cfa6a | Torsten Seemann | 07 September 2019, 11:34:48 UTC | Issue #83 | add STRAND column | 07 September 2019, 11:34:48 UTC |
| b1e52ad | Torsten Seemann | 07 September 2019, 11:16:08 UTC | Add perl badge | 07 September 2019, 11:16:08 UTC |
| df6d1d8 | Torsten Seemann | 07 September 2019, 10:51:21 UTC | New NCBI database using new method | 07 September 2019, 10:51:21 UTC |
| 4f9d805 | Torsten Seemann | 07 September 2019, 10:48:35 UTC | Issue #101 | new NCBI data source - no more edirect | 07 September 2019, 10:48:35 UTC |
| 890e0ad | Torsten Seemann | 07 September 2019, 06:44:24 UTC | Merge branch 'master' of https://github.com/tseemann/abricate | 07 September 2019, 06:44:24 UTC |
| 22201b8 | Torsten Seemann | 07 September 2019, 06:35:45 UTC | spring cleaning of help and basename | 07 September 2019, 06:43:46 UTC |
| 49a7d9b | Torsten Seemann | 07 September 2019, 06:24:21 UTC | Stop bundling Path::Tiny | 07 September 2019, 06:24:21 UTC |
| dc3952b | Torsten Seemann | 07 September 2019, 06:19:08 UTC | travis - use http not ftp for blast d/l | 07 September 2019, 06:19:08 UTC |
| e68aa2e | Torsten Seemann | 03 September 2019, 21:54:44 UTC | Merge pull request #97 from bgruening/patch-1 fix spelling of "laso" | 03 September 2019, 21:54:44 UTC |
| d9bb47e | Björn Grüning | 03 September 2019, 20:07:15 UTC | fix spelling | 03 September 2019, 20:07:15 UTC |
| 849eb04 | Torsten Seemann | 24 August 2019, 21:55:58 UTC | Issue #95 | remove DB~~ID~~~ from PRODUCT column | 24 August 2019, 21:55:58 UTC |
| e08f86c | Torsten Seemann | 24 August 2019, 08:57:48 UTC | remove File::Slurp unused | 24 August 2019, 08:57:48 UTC |
| 7f2576f | Torsten Seemann | 24 August 2019, 08:47:27 UTC | Remove unused Text::CSV dep | 24 August 2019, 08:47:27 UTC |
| b19a747 | Torsten Seemann | 24 August 2019, 08:46:27 UTC | use BLASTVER to easily change test | 24 August 2019, 08:46:27 UTC |
| c372317 | Torsten Seemann | 24 August 2019, 08:40:00 UTC | Ensure no ~~~ in output table | 24 August 2019, 08:40:00 UTC |
| 90177ae | Torsten Seemann | 24 August 2019, 03:15:22 UTC | Issue #92 | fix resfinder parsing bug + update db | 24 August 2019, 03:22:43 UTC |
| fbe5176 | Torsten Seemann | 24 August 2019, 03:07:08 UTC | improve custom db docs | 24 August 2019, 03:07:08 UTC |
| 7b4a641 | Torsten Seemann | 23 August 2019, 06:44:57 UTC | bump to 0.9.3 | 23 August 2019, 06:44:57 UTC |
| 9862c9e | Torsten Seemann | 23 August 2019, 05:11:51 UTC | travis has a bin/ folder already | 23 August 2019, 05:11:51 UTC |
| 7de3d5f | Torsten Seemann | 23 August 2019, 04:55:23 UTC | Update docs for 0.9 series | 23 August 2019, 04:55:23 UTC |
| 58e7918 | Torsten Seemann | 23 August 2019, 04:51:54 UTC | Add any2fasta to TRAVIS | 23 August 2019, 04:51:54 UTC |
| 070e35c | Torsten Seemann | 23 August 2019, 04:17:05 UTC | Update to CARD 3.0.4 | 23 August 2019, 04:17:39 UTC |
| cdf437c | Torsten Seemann | 01 August 2019, 05:05:14 UTC | Issue #67 | Replace seqret with any2fasta | 01 August 2019, 05:06:52 UTC |
| 24f8a61 | Torsten Seemann | 01 August 2019, 04:55:29 UTC | default db = ncbi + v0.9.0 | 01 August 2019, 04:55:29 UTC |
| 875ae14 | Torsten Seemann | 18 July 2019, 00:03:46 UTC | Add AMRFinder to other tools list | 18 July 2019, 00:03:46 UTC |
| 58ddedb | Torsten Seemann | 18 July 2019, 00:02:41 UTC | Add -c order to conda install | 18 July 2019, 00:02:41 UTC |
| dbb914e | Torsten Seemann | 17 July 2019, 03:35:30 UTC | Fix grammar in megares error message | 17 July 2019, 03:35:30 UTC |
| 3ac00c4 | Torsten Seemann | 17 July 2019, 01:47:08 UTC | Update Resfinder 2019-07-17 | 17 July 2019, 01:47:08 UTC |
| 2ca5bd6 | Torsten Seemann | 17 July 2019, 01:37:52 UTC | Update ARG-ANNOT to V5 | 17 July 2019, 01:37:52 UTC |
| 8b21c44 | Torsten Seemann | 17 July 2019, 01:37:00 UTC | Issue #91 | update ARG-ANNOT URL | 17 July 2019, 01:37:00 UTC |
| e389bdd | Torsten Seemann | 17 July 2019, 01:27:30 UTC | Use generic CARD URL for download | 17 July 2019, 01:27:30 UTC |
| 67a0a14 | Torsten Seemann | 17 July 2019, 01:26:21 UTC | Update NCBI to Wed 17 July 2019 | 17 July 2019, 01:26:21 UTC |
| 7a137b8 | Torsten Seemann | 17 July 2019, 01:24:52 UTC | Update CARD to July 2019 | 17 July 2019, 01:24:52 UTC |
| 4b8ce23 | Torsten Seemann | 01 April 2019, 05:05:05 UTC | Fix test as arg-annot is dead | 01 April 2019, 05:05:05 UTC |
| 3556bce | Torsten Seemann | 01 April 2019, 01:18:40 UTC | Bump to 0.8.13 | 01 April 2019, 01:18:40 UTC |
| 0fccab0 | Torsten Seemann | 01 April 2019, 01:17:56 UTC | Update NCBI db (was missing 500 genes) | 01 April 2019, 01:17:56 UTC |
| 3257b6a | Torsten Seemann | 01 April 2019, 01:17:40 UTC | Update Resfinder database | 01 April 2019, 01:17:40 UTC |
| 863322a | Torsten Seemann | 01 April 2019, 01:17:28 UTC | Update CARD database | 01 April 2019, 01:17:28 UTC |
| 4876987 | Torsten Seemann | 01 April 2019, 01:10:13 UTC | Remove -parse_seqids to avoid long name error | 01 April 2019, 01:10:13 UTC |
| 70b7785 | Torsten Seemann | 15 March 2019, 04:55:03 UTC | Update NCBI database 15-MAR-2018 | 15 March 2019, 04:55:03 UTC |
| da341f3 | Torsten Seemann | 15 March 2019, 04:34:15 UTC | Update to CARD 3.0.1 | 15 March 2019, 04:34:15 UTC |
| 3921737 | Torsten Seemann | 15 March 2019, 04:32:30 UTC | Issue #78 | fix fail on long seq IDs | 15 March 2019, 04:32:30 UTC |
| d0516d8 | Torsten Seemann | 22 January 2019, 00:29:41 UTC | Issue #76 | blast 2.8.1 warning causes exit | 22 January 2019, 00:29:41 UTC |
| c753b12 | Torsten Seemann | 04 October 2018, 05:09:09 UTC | Issue #64 | fix VFDB regexp by @VGalata | 04 October 2018, 05:09:09 UTC |
| 6e27772 | Torsten Seemann | 19 September 2018, 19:30:11 UTC | Update NCBI db - 51 new genes | 19 September 2018, 19:30:11 UTC |
| 838b5af | Torsten Seemann | 19 September 2018, 19:08:29 UTC | Update to CARD 2.0.3 | 19 September 2018, 19:08:29 UTC |
| 4e082e4 | Torsten Seemann | 19 August 2018, 03:56:53 UTC | Fix brew install command | 19 August 2018, 03:56:53 UTC |
| 6f1372a | Torsten Seemann | 19 August 2018, 03:53:57 UTC | Bump to 0.8.7 | 19 August 2018, 03:53:57 UTC |
| a747e62 | Torsten Seemann | 19 August 2018, 03:45:30 UTC | Add ecoli_vf database | 19 August 2018, 03:45:30 UTC |
| 2f9220b | Torsten Seemann | 15 August 2018, 08:46:44 UTC | Issue #25 | d/l permalink to latest CARD | 15 August 2018, 08:47:08 UTC |
| 4ca9bdb | Torsten Seemann | 14 August 2018, 01:47:18 UTC | Issue #62 | handle corrupt resfinder FASTAs | 14 August 2018, 01:47:18 UTC |
