| 836eeb4 | Francesco | 07 August 2018, 16:11:33 UTC | Merge pull request #14 from psteinb/adding-FRC-to-install-tree added sentinel to link statically to bamtools if available, added FRC… | 07 August 2018, 16:11:33 UTC |
| f9c5c60 | Peter Steinbach | 07 August 2018, 15:13:43 UTC | link statically against boost if available | 07 August 2018, 15:13:43 UTC |
| a10f875 | Peter Steinbach | 07 August 2018, 15:08:17 UTC | added sentinel to link statically to bamtools if available, added FRC to install tree so that <make install> does somewhat the right thing | 07 August 2018, 15:08:17 UTC |
| 5b3f53e | Francesco Vezzi | 23 July 2015, 10:55:47 UTC | modified orientation of MP libraries in the help message | 23 July 2015, 10:55:47 UTC |
| 646db31 | Francesco Vezzi | 15 July 2015, 08:05:48 UTC | revert to 3e06d12c45d29e23a821f3a33fd5f5bd2fd6e89d | 15 July 2015, 08:05:48 UTC |
| 7512cb7 | Francesco Vezzi | 15 July 2015, 07:50:19 UTC | updated to latest | 15 July 2015, 07:50:19 UTC |
| f9795c7 | Francesco | 15 July 2015, 06:19:51 UTC | Merge pull request #4 from J35P312/master Pull request 14th july | 15 July 2015, 06:19:51 UTC |
| 103c5f1 | J35P312 | 14 July 2015, 15:07:50 UTC | modified: src/data_structures/Translocation.cpp modified: src/data_structures/Translocation.h modified: src/data_structures/findTranslocationsOnTheFly.cpp | 14 July 2015, 15:07:50 UTC |
| be81309 | Francesco | 09 July 2015, 13:10:30 UTC | Merge pull request #3 from J35P312/master Pull request 6 july | 09 July 2015, 13:10:30 UTC |
| 45474ce | J35P312 | 06 July 2015, 14:07:57 UTC | Merge branch 'master' of https://github.com/J35P312/FindTranslocations | 06 July 2015, 14:07:57 UTC |
| 557496e | J35P312 | 06 July 2015, 14:04:30 UTC | modified: src/FindTranslocations.cpp modified: src/common.h modified: src/data_structures/ExtractModule.cpp modified: src/data_structures/ProgramModules.h modified: src/data_structures/Translocation.cpp modified: src/data_structures/Translocation.h modified: src/data_structures/findTranslocationsOnTheFly.cpp | 06 July 2015, 14:04:30 UTC |
| f50920d | Francesco | 02 July 2015, 05:38:25 UTC | Merge pull request #2 from J35P312/master Pull request june 30th | 02 July 2015, 05:38:25 UTC |
| 93e7dda | J35P312 | 01 July 2015, 14:10:16 UTC | Update ExtractModule.cpp | 01 July 2015, 14:10:16 UTC |
| e7cb769 | J35P312 | 01 July 2015, 14:09:40 UTC | Update ProgramModules.h | 01 July 2015, 14:09:40 UTC |
| d3a8829 | J35P312 | 01 July 2015, 14:05:01 UTC | modified: CMakeLists.txt modified: src/FindTranslocations.cpp renamed: src/data_structures/extract.cpp -> src/data_structures/ExtractModule.cpp new file: src/data_structures/ProgramModules.h modified: src/data_structures/findTranslocationsOnTheFly.cpp | 01 July 2015, 14:05:01 UTC |
| 288f5d0 | J35P312 | 30 June 2015, 15:09:25 UTC | new file: src/data_structures/extract.cpp new file: src/data_structures/findTranslocationsOnTheFly.cpp | 30 June 2015, 15:09:25 UTC |
| 70bc8fc | J35P312 | 30 June 2015, 15:05:19 UTC | deleted: src/data_structures/.dirstamp src/data_structures/extract.cpp src/data_structures/findTranslocationsOnTheFly.cpp | 30 June 2015, 15:05:19 UTC |
| ba9b748 | J35P312 | 30 June 2015, 15:03:36 UTC | modified: src/FindTranslocations.cpp modified: src/data_structures/Translocation.cpp modified: src/data_structures/Translocation.h src/data_structures/extract.cpp src/data_structures/findTranslocationsOnTheFly.cpp | 30 June 2015, 15:03:36 UTC |
| f32fb3d | J35P312 | 29 June 2015, 10:32:39 UTC | modified: src/FindTranslocations.cpp modified: src/data_structures/Translocation.cpp modified: src/data_structures/Translocation.h | 29 June 2015, 10:32:39 UTC |
| 42d8ae8 | Francesco | 26 June 2015, 12:09:52 UTC | Merge pull request #1 from J35P312/master more options, bam file extract | 26 June 2015, 12:09:52 UTC |
| 7a3a30a | J35P312 | 25 June 2015, 14:29:40 UTC | modified: src/FindTranslocations.cpp modified: src/data_structures/Translocation.cpp modified: src/data_structures/Translocation.h | 25 June 2015, 14:29:40 UTC |
| 80b0b9d | J35P312 | 20 June 2015, 15:28:11 UTC | modified: src/FindTranslocations.cpp | 20 June 2015, 15:28:11 UTC |
| 3a69d3c | J35P312 | 15 June 2015, 14:54:01 UTC | modified: src/FindTranslocations.cpp | 15 June 2015, 14:54:01 UTC |
| bc62b7b | J35P312 | 15 June 2015, 13:50:13 UTC | Update AUTHORS | 15 June 2015, 13:50:13 UTC |
| 84b57e3 | Francesco | 12 June 2015, 13:59:16 UTC | Merge pull request #1 from J35P312/master Update AUTHORS | 12 June 2015, 13:59:16 UTC |
| cbfe8f6 | J35P312 | 12 June 2015, 13:55:52 UTC | Update AUTHORS | 12 June 2015, 13:55:52 UTC |
| eefc8eb | Francesco Vezzi | 12 June 2015, 13:46:24 UTC | some changes I have really no idea of | 12 June 2015, 13:46:24 UTC |
| 3e06d12 | Francesco Vezzi | 27 March 2015, 10:39:07 UTC | now it generates for each library a contig stats table. Waiting for Doug now | 27 March 2015, 10:39:07 UTC |
| 9d44857 | Francesco Vezzi | 26 March 2015, 15:39:00 UTC | assemplyTable file produced summarising stats and removing verbose printing | 26 March 2015, 15:39:00 UTC |
| 49b74e1 | Francesco Vezzi | 25 March 2015, 14:58:42 UTC | FRCurve decoupled from FindTrans | 25 March 2015, 14:58:42 UTC |
| 2b3744d | Francesco Vezzi | 13 March 2015, 09:52:06 UTC | modified README to add option for compiling on uppmax | 13 March 2015, 09:52:06 UTC |
| 2be2697 | Francesco Vezzi | 27 February 2015, 14:40:49 UTC | FindTranslocation detached from FRCbam | 27 February 2015, 14:40:49 UTC |
| 898433b | Francesco Vezzi | 27 February 2015, 13:56:01 UTC | changed README | 27 February 2015, 13:56:01 UTC |
| b8f1b94 | Francesco Vezzi | 27 February 2015, 13:53:35 UTC | new FindTranslocation | 27 February 2015, 13:53:35 UTC |
| eaa7daa | Francesco Vezzi | 27 February 2015, 13:41:49 UTC | cleaning up the repo | 27 February 2015, 13:41:49 UTC |
| 4bfa2f8 | vezzi | 30 June 2014, 10:52:40 UTC | stable version to be merged into master once validated | 30 June 2014, 10:52:40 UTC |
| 8f68f88 | vezzi | 30 June 2014, 09:25:21 UTC | add more verbose output | 30 June 2014, 09:25:21 UTC |
| 7533261 | vezzi | 30 June 2014, 08:04:12 UTC | Merge branch 'master' of github.com:vezzi/FRC_align into FRCbam_bugFix | 30 June 2014, 08:04:12 UTC |
| 2f9230d | vezzi | 30 June 2014, 08:02:25 UTC | getFeatures is now a method of FRC class (this avid copies of FRC object), added some verbose output to check time | 30 June 2014, 08:02:25 UTC |
| 87cbbe6 | Francesco | 02 June 2014, 15:04:00 UTC | Merge pull request #9 from vezzi/devel Fixed problem with deletion detection: stable version | 02 June 2014, 15:04:00 UTC |
| 08ec68a | vezzi | 02 June 2014, 15:01:54 UTC | Fixed problem with deletion detection: stable version | 02 June 2014, 15:01:54 UTC |
| f053e4e | Francesco | 29 May 2014, 12:32:59 UTC | Merge pull request #8 from vezzi/devel Devel | 29 May 2014, 12:32:59 UTC |
| 498b86c | vezzi | 29 May 2014, 12:25:56 UTC | removed old .h files | 29 May 2014, 12:25:56 UTC |
| 136c814 | vezzi | 29 May 2014, 12:25:07 UTC | Added check to see if bam file is ordered by sequence name | 29 May 2014, 12:25:07 UTC |
| 53a95c3 | vezzi | 28 May 2014, 08:12:51 UTC | deleted not necessary .h files and added support for deletions | 28 May 2014, 08:12:51 UTC |
| cf6112b | Francesco Vezzi | 27 May 2014, 09:58:05 UTC | added my email | 27 May 2014, 09:58:05 UTC |
| c1ee24a | vezzi | 26 May 2014, 07:01:28 UTC | Added: copyright and NEWS | 26 May 2014, 07:01:28 UTC |
| 7266837 | vezzi | 26 May 2014, 06:59:00 UTC | README.md and INSTALLATION | 26 May 2014, 06:59:00 UTC |
| 9ed1115 | vezzi | 26 May 2014, 06:57:01 UTC | small changes to readme.md | 26 May 2014, 06:57:01 UTC |
| 36be3d5 | vezzi | 26 May 2014, 06:54:48 UTC | README.md modified | 26 May 2014, 06:54:48 UTC |
| 5406d67 | vezzi | 26 May 2014, 06:43:05 UTC | mark up | 26 May 2014, 06:43:05 UTC |
| 1ae6a9f | vezzi | 26 May 2014, 06:38:50 UTC | mark down :-D | 26 May 2014, 06:38:50 UTC |
| 56d630c | vezzi | 26 May 2014, 06:33:45 UTC | Still learning markup .... | 26 May 2014, 06:33:45 UTC |
| e625667 | vezzi | 26 May 2014, 06:24:03 UTC | Still learning markup for github | 26 May 2014, 06:24:03 UTC |
| b161546 | vezzi | 26 May 2014, 06:22:23 UTC | Bulletin list for Readme.md | 26 May 2014, 06:22:23 UTC |
| 586eb42 | vezzi | 26 May 2014, 06:20:42 UTC | changed README with README.md | 26 May 2014, 06:20:42 UTC |
| 6dc50df | vezzi | 26 May 2014, 06:18:22 UTC | Modified README and added license | 26 May 2014, 06:18:22 UTC |
| dd7b05d | vezzi | 01 May 2014, 15:54:35 UTC | Solved problem with ID name that was swapped. Removed verbosity in output | 01 May 2014, 15:54:35 UTC |
| ad33fe0 | vezzi | 30 April 2014, 13:50:10 UTC | solved problem in printing output | 30 April 2014, 13:50:10 UTC |
| aea4654 | vezzi | 30 April 2014, 11:59:18 UTC | added include algorithm | 30 April 2014, 11:59:18 UTC |
| 697ff8b | vezzi | 30 April 2014, 11:24:25 UTC | Added FindTranslocations module to this package as a different binary | 30 April 2014, 11:24:25 UTC |
| 6528055 | vezzi | 14 April 2014, 09:28:05 UTC | new dafault values for CE_stats | 14 April 2014, 09:28:05 UTC |
| d1da8f6 | vezzi | 14 April 2014, 09:04:26 UTC | Playing with CE stats -- again | 14 April 2014, 09:04:26 UTC |
| b550f36 | vezzi | 14 April 2014, 08:46:13 UTC | cout causing verbose output and wrong is_mp in MP FRC computation | 14 April 2014, 08:46:13 UTC |
| 81f1f53 | Francesco Vezzi | 14 April 2014, 08:31:49 UTC | modified readme message to install software | 14 April 2014, 08:31:49 UTC |
| 5735d39 | vezzi | 14 April 2014, 08:30:16 UTC | Fix bug causing not exit from final loop | 14 April 2014, 08:30:16 UTC |
| e5e9a9a | vezzi | 11 April 2014, 13:24:08 UTC | Tremendus change in project structured | 11 April 2014, 13:24:08 UTC |
| 0917234 | vezzi | 09 April 2014, 07:59:34 UTC | changes in Make | 09 April 2014, 07:59:34 UTC |
| 89093a2 | vezzi | 09 April 2014, 07:39:29 UTC | remover src/Makefile | 09 April 2014, 07:39:29 UTC |
| 9b905a0 | vezzi | 09 April 2014, 07:17:26 UTC | added autom4te.cache | 09 April 2014, 07:17:26 UTC |
| db91b41 | vezzi | 09 April 2014, 07:12:30 UTC | removed autom4te.cache | 09 April 2014, 07:12:30 UTC |
| 11a6c10 | vezzi | 09 April 2014, 07:08:42 UTC | Major code re-factoring: removed old and unuseful files for reads handling and Mask (old ERNE things). | 09 April 2014, 07:08:42 UTC |
| 1983bef | vezzi | 23 October 2013, 08:13:41 UTC | FIxed bug, missing value after "=" | 23 October 2013, 08:13:41 UTC |
| ad88e7e | vezzi | 26 September 2013, 13:20:36 UTC | Window approach implemented Intra-chromosomal rearrengments now identified | 26 September 2013, 13:20:36 UTC |
| 3398ca4 | vezzi | 06 August 2013, 11:42:05 UTC | typo fix | 06 August 2013, 11:42:05 UTC |
| d04ab4a | vezzi | 17 July 2013, 14:12:30 UTC | Strange error while installing on Uppmax, missing #include <iostream> but on my laptop is working | 17 July 2013, 14:12:30 UTC |
| 09e8ca2 | vezzi | 17 July 2013, 13:49:03 UTC | addedd Transloactions.cpp and Translocations.h | 17 July 2013, 13:49:03 UTC |
| d2d0e9e | vezzi | 17 July 2013, 13:43:20 UTC | First working version | 17 July 2013, 13:43:20 UTC |
| fd37e2a | vezzi | 09 July 2013, 15:00:11 UTC | added new files | 09 July 2013, 15:00:11 UTC |
| 801c89b | vezzi | 09 July 2013, 14:58:49 UTC | First fully working prototype: able to read BAM files and process them | 09 July 2013, 14:58:49 UTC |
| bcca301 | vezzi | 09 July 2013, 11:30:43 UTC | fix problem with configure on UPPMAX | 09 July 2013, 11:30:43 UTC |
| 8f0e2aa | vezzi | 09 July 2013, 11:26:13 UTC | Improved configure | 09 July 2013, 11:26:13 UTC |
| 33358e3 | vezzi | 09 July 2013, 10:06:40 UTC | eeee | 09 July 2013, 10:06:40 UTC |
| 2610a68 | vezzi | 09 July 2013, 09:56:43 UTC | first stable commit (still "hello world") | 09 July 2013, 09:56:43 UTC |
| d2d9b5f | vezzi | 09 July 2013, 09:51:18 UTC | compile, depcomp, missing | 09 July 2013, 09:51:18 UTC |
| 28e14bd | vezzi | 09 July 2013, 09:44:39 UTC | ltmain.sh | 09 July 2013, 09:44:39 UTC |
| 8c743d5 | vezzi | 09 July 2013, 09:40:27 UTC | Makefile.in | 09 July 2013, 09:40:27 UTC |
| b990430 | vezzi | 09 July 2013, 09:38:45 UTC | config.guess and config.status | 09 July 2013, 09:38:45 UTC |
| 7c3d2f9 | vezzi | 09 July 2013, 09:36:55 UTC | config.sub | 09 July 2013, 09:36:55 UTC |
| 72664bf | vezzi | 09 July 2013, 09:30:15 UTC | First stable commit (still "Hello world") | 09 July 2013, 09:30:15 UTC |
| 589e8d8 | vezzi | 09 July 2013, 06:15:37 UTC | Stable starting point | 09 July 2013, 06:15:37 UTC |
| 16ce409 | vezzi | 27 June 2013, 12:10:09 UTC | First commit | 27 June 2013, 12:10:09 UTC |
| 1e9c56a | Francesco | 27 June 2013, 09:48:22 UTC | Initial commit | 27 June 2013, 09:48:22 UTC |
| 77a4bc7 | vezzi | 26 April 2013, 11:28:06 UTC | Merge branch 'master' of https://github.com/vezzi/FRC_align.git | 26 April 2013, 11:28:06 UTC |
| bccb61b | vezzi | 26 April 2013, 11:11:40 UTC | solved bug in computing singleton coverage that, anyway, did not affect computation of features, but only statiscs being printed in output | 26 April 2013, 11:11:40 UTC |
| 3658ce1 | Francesco | 15 November 2012, 08:22:52 UTC | Merge pull request #4 from jvhaarst/patch-1 Fixed some minor typos [jvhaarst/patch-1] | 15 November 2012, 08:22:52 UTC |
| 5888a51 | Jan van Haarst | 15 November 2012, 08:15:59 UTC | Fixed some minor typos | 15 November 2012, 08:15:59 UTC |
| 961480f | vezzi | 02 November 2012, 08:45:25 UTC | Added extension to gff file to avoid over-writings (thanks to Jan van Haarst) | 02 November 2012, 08:45:25 UTC |
| 8b2cad2 | vezzi | 26 October 2012, 07:22:23 UTC | Updated README now describing how to use the tool | 26 October 2012, 07:22:23 UTC |
| 620c787 | vezzi | 26 September 2012, 12:04:18 UTC | README and INSTALL updated | 26 September 2012, 12:04:18 UTC |
