| 8d5e712 | Yasin Kaymaz | 26 May 2021, 07:52:06 UTC | title change | 26 May 2021, 07:52:06 UTC |
| 1681b6d | Yasin Kaymaz | 12 May 2021, 17:52:43 UTC | seurat cluster steps added | 12 May 2021, 17:52:43 UTC |
| 79a4fe0 | Yasin Kaymaz | 12 May 2021, 17:51:24 UTC | added clustering steps with Seurat for the test dataset | 12 May 2021, 17:51:24 UTC |
| 8f0fc5a | Yasin Kaymaz | 12 May 2021, 17:45:02 UTC | additional instructions to install | 12 May 2021, 17:45:02 UTC |
| 79e406f | Yasin Kaymaz | 29 April 2020, 01:46:55 UTC | fixed exceptions of single leaf nodes | 29 April 2020, 01:46:55 UTC |
| 1707fab | Yasin Kaymaz | 28 April 2020, 14:12:48 UTC | skipping the DetermineAlphas step | 28 April 2020, 14:12:48 UTC |
| b10e3d5 | Yasin Kaymaz | 23 April 2020, 05:12:17 UTC | using fixed alpha low threshold | 23 April 2020, 05:12:17 UTC |
| d7a3d92 | Yasin Kaymaz | 22 April 2020, 20:51:36 UTC | added Downsampling of excessive data | 22 April 2020, 20:51:36 UTC |
| 218bb43 | Yasin Kaymaz | 21 April 2020, 14:17:48 UTC | fix to SaveHieRMod function | 21 April 2020, 14:17:48 UTC |
| 714a99f | Yasin Kaymaz | 20 April 2020, 14:41:35 UTC | new suggests | 20 April 2020, 14:41:35 UTC |
| 5884ef2 | Yasin Kaymaz | 20 April 2020, 04:45:40 UTC | bulk commit to shiny server | 20 April 2020, 04:45:40 UTC |
| 37748ae | Yasin Kaymaz | 18 April 2020, 15:50:49 UTC | typo fixes to readme | 18 April 2020, 15:50:49 UTC |
| a012e51 | Yasin Kaymaz | 17 April 2020, 19:22:03 UTC | tutorial images | 17 April 2020, 19:22:03 UTC |
| 8ecbeb9 | Yasin Kaymaz | 17 April 2020, 19:20:30 UTC | update to readme | 17 April 2020, 19:20:30 UTC |
| 32579e2 | Yasin Kaymaz | 02 March 2020, 16:11:00 UTC | bulk commit with change in Evaluation scheme | 02 March 2020, 16:11:00 UTC |
| 54b92fe | Yasin Kaymaz | 02 February 2020, 04:17:35 UTC | removed tspair pool | 02 February 2020, 04:17:35 UTC |
| 531feb0 | Yasin Kaymaz | 02 February 2020, 03:37:02 UTC | Switcing to Path Certainty ranking based decision | 02 February 2020, 03:37:02 UTC |
| cba74ce | Yasin Kaymaz | 24 January 2020, 19:33:23 UTC | fix to a function | 24 January 2020, 19:33:23 UTC |
| 04dafa1 | Yasin Kaymaz | 24 January 2020, 18:00:56 UTC | array of alphas - retry | 24 January 2020, 18:00:56 UTC |
| 202280a | Yasin Kaymaz | 24 January 2020, 17:15:30 UTC | fix to merged conflict | 24 January 2020, 17:15:30 UTC |
| 8d5fb8a | Yasin Kaymaz | 24 January 2020, 17:13:38 UTC | Merge branch 'master' of https://github.com/yasinkaymaz/HieRFIT | 24 January 2020, 17:13:38 UTC |
| 13651ab | Yasin Kaymaz | 24 January 2020, 17:13:14 UTC | reverted the array of alphas | 24 January 2020, 17:13:14 UTC |
| b1bd9da | Yasin Kaymaz | 24 January 2020, 15:55:40 UTC | changed to array of alphas | 24 January 2020, 15:55:40 UTC |
| d06fc61 | Yasin Kaymaz | 22 January 2020, 17:04:33 UTC | setting default alpha | 22 January 2020, 17:04:33 UTC |
| ebc2139 | Yasin Kaymaz | 22 January 2020, 15:15:33 UTC | update to alpha input | 22 January 2020, 15:15:33 UTC |
| 9d325c6 | Yasin Kaymaz | 22 January 2020, 04:06:31 UTC | learning alpha from reference | 22 January 2020, 04:06:31 UTC |
| a650b89 | Yasin Kaymaz | 20 January 2020, 18:50:24 UTC | update to the node trainer | 20 January 2020, 18:50:24 UTC |
| c8ee6f5 | Yasin Kaymaz | 20 January 2020, 18:33:44 UTC | updated the node trainer | 20 January 2020, 18:33:44 UTC |
| 11228de | Yasin Kaymaz | 12 December 2019, 15:42:01 UTC | fix | 12 December 2019, 15:42:01 UTC |
| 84e12e0 | Yasin Kaymaz | 12 December 2019, 15:39:07 UTC | fixed a bug about fi in CTTraverser | 12 December 2019, 15:39:07 UTC |
| c5292b1 | Yasin Kaymaz | 11 December 2019, 14:42:44 UTC | added a De Novo tree function | 11 December 2019, 14:42:44 UTC |
| bf8e97d | Yasin Kaymaz | 11 December 2019, 03:49:29 UTC | added Auto-clustering for De Novo tree | 11 December 2019, 03:49:29 UTC |
| a7950bb | Yasin Kaymaz | 09 December 2019, 21:05:37 UTC | testing the multi thread with the docker image | 09 December 2019, 21:05:37 UTC |
| e3d8efa | Yasin Kaymaz | 20 November 2019, 18:42:47 UTC | defining the Rlib path for paralell | 20 November 2019, 18:42:47 UTC |
| db64c56 | Yasin Kaymaz | 20 November 2019, 18:34:49 UTC | reversed the fi node back | 20 November 2019, 18:34:49 UTC |
| 7e20d3f | Yasin Kaymaz | 13 November 2019, 18:24:17 UTC | update | 13 November 2019, 18:24:17 UTC |
| 9dac6b3 | Yasin Kaymaz | 13 November 2019, 18:11:34 UTC | update | 13 November 2019, 18:11:34 UTC |
| d52bac0 | Yasin Kaymaz | 13 November 2019, 18:07:39 UTC | update | 13 November 2019, 18:07:39 UTC |
| 84af463 | Yasin Kaymaz | 13 November 2019, 18:04:50 UTC | update | 13 November 2019, 18:04:50 UTC |
| f09daad | Yasin Kaymaz | 13 November 2019, 18:00:06 UTC | update | 13 November 2019, 18:00:06 UTC |
| bfb2d90 | Yasin Kaymaz | 13 November 2019, 17:55:15 UTC | update | 13 November 2019, 17:55:15 UTC |
| 9914c2c | Yasin Kaymaz | 13 November 2019, 17:43:27 UTC | update to Readme | 13 November 2019, 17:43:27 UTC |
| e1c7355 | Yasin Kaymaz | 06 October 2019, 23:26:36 UTC | conditional probability for P_path | 06 October 2019, 23:26:36 UTC |
| 9431975 | Yasin Kaymaz | 03 October 2019, 19:41:58 UTC | Fixed a weird bug related to column adding to dataframe. | 03 October 2019, 19:41:58 UTC |
| b15886b | Yasin Kaymaz | 03 October 2019, 17:24:29 UTC | expanded the outgroup leafs | 03 October 2019, 17:24:29 UTC |
| f64160a | Yasin Kaymaz | 02 October 2019, 18:46:13 UTC | updated CV function | 02 October 2019, 18:46:13 UTC |
| 040e1cb | Yasin Kaymaz | 02 October 2019, 17:15:30 UTC | Merge pull request #2 from yasinkaymaz/development added outgroup probabilities | 02 October 2019, 17:15:30 UTC |
| e97a1df | Yasin Kaymaz | 02 October 2019, 17:14:40 UTC | added outgroup probabilities | 02 October 2019, 17:14:40 UTC |
| 65e7c7c | Yasin Kaymaz | 01 October 2019, 16:55:30 UTC | added wilcox rank sum to PCA feature selection | 01 October 2019, 16:55:30 UTC |
| a4d1a2b | Yasin Kaymaz | 01 October 2019, 15:05:56 UTC | updated CV functions | 01 October 2019, 15:05:56 UTC |
| 3db2c65 | Yasin Kaymaz | 28 September 2019, 20:31:08 UTC | testing wilcox. rank sum for features | 28 September 2019, 20:31:08 UTC |
| 7086189 | Yasin Kaymaz | 20 September 2019, 15:50:17 UTC | added i+1 node into hiemods. | 20 September 2019, 15:50:17 UTC |
| 666855e | Yasin Kaymaz | 19 September 2019, 21:30:00 UTC | changed to wi from cardinality | 19 September 2019, 21:30:00 UTC |
| 0f3ede0 | Yasin Kaymaz | 17 September 2019, 20:32:19 UTC | the last commit before switching to E(x) from cardinality in scoring. | 17 September 2019, 20:32:19 UTC |
| b3e4dd5 | Yasin Kaymaz | 06 August 2019, 03:24:53 UTC | candidate path selection with mean Certainty | 06 August 2019, 03:24:53 UTC |
| a96442d | Yasin Kaymaz | 05 August 2019, 01:04:32 UTC | fixed typos | 05 August 2019, 01:04:32 UTC |
| 12960f3 | Yasin Kaymaz | 04 August 2019, 19:26:37 UTC | Changed the scoring scheme by requiring all ancestors of a candidate node to pass certainty threshold | 04 August 2019, 19:26:37 UTC |
| b4fd58a | Yasin Kaymaz | 02 August 2019, 19:25:22 UTC | changed the prediction hierarchy evaluation scheme. | 02 August 2019, 19:25:22 UTC |
| b75de56 | Yasin Kaymaz | 29 July 2019, 20:10:23 UTC | fixed a source of potential error in ceR function | 29 July 2019, 20:10:23 UTC |
| 01a260a | Yasin Kaymaz | 29 July 2019, 18:59:39 UTC | new testing functions | 29 July 2019, 18:59:39 UTC |
| 23a21df | Yasin Kaymaz | 24 July 2019, 20:09:05 UTC | fixed labels function | 24 July 2019, 20:09:05 UTC |
| 55c84af | Yasin Kaymaz | 23 July 2019, 15:18:17 UTC | added ortho functionality for time save | 23 July 2019, 15:18:17 UTC |
| f7aeb35 | Yasin Kaymaz | 13 July 2019, 20:15:49 UTC | Merge pull request #1 from yasinkaymaz/dev01 Dev01 | 13 July 2019, 20:15:49 UTC |
| d5166ef | Yasin Kaymaz | 12 July 2019, 15:38:18 UTC | changed the entropy weight centers to mean+/-sd | 12 July 2019, 15:38:18 UTC |
| 393c0ce | Yasin Kaymaz | 08 July 2019, 17:00:06 UTC | optimized function with faster alg. | 08 July 2019, 17:00:06 UTC |
| 001bf90 | Yasin Kaymaz | 06 July 2019, 19:05:36 UTC | reduced dependencies, faster computation | 06 July 2019, 19:05:36 UTC |
| 7a23a08 | Yasin Kaymaz | 28 June 2019, 13:53:50 UTC | commit before branching | 28 June 2019, 13:53:50 UTC |
| f32717f | Yasin Kaymaz | 25 June 2019, 01:59:18 UTC | reorganized R folder | 25 June 2019, 01:59:18 UTC |
| 47f712a | Yasin Kaymaz | 20 June 2019, 13:20:49 UTC | implemented the certainty function with asymmetric entropy | 20 June 2019, 13:20:49 UTC |
| 9154a92 | Yasin Kaymaz | 18 June 2019, 17:40:02 UTC | last commit before implementing Certainty function | 18 June 2019, 17:40:02 UTC |
| 3f0a474 | Yasin Kaymaz | 09 June 2019, 21:19:52 UTC | updates to function names | 09 June 2019, 21:19:52 UTC |
| 8805435 | Yasin Kaymaz | 06 June 2019, 02:17:17 UTC | removed thread | 06 June 2019, 02:17:17 UTC |
| 20e53c7 | Yasin Kaymaz | 06 June 2019, 02:14:16 UTC | removed tidyverse | 06 June 2019, 02:14:16 UTC |
| 6d19288 | Yasin Kaymaz | 06 June 2019, 02:11:43 UTC | temp sol | 06 June 2019, 02:11:43 UTC |
| 549d964 | Yasin Kaymaz | 06 June 2019, 02:06:58 UTC | temp solution to foreach lib problem | 06 June 2019, 02:06:58 UTC |
| 40dfac1 | Yasin Kaymaz | 06 June 2019, 01:43:27 UTC | threading option | 06 June 2019, 01:43:27 UTC |
| bfabea7 | Yasin Kaymaz | 05 June 2019, 21:56:08 UTC | using dplyr:: | 05 June 2019, 21:56:08 UTC |
| 9cd2351 | Yasin Kaymaz | 05 June 2019, 21:10:17 UTC | implemented cv function for evaluation | 05 June 2019, 21:10:17 UTC |
| c741da6 | Yasin Kaymaz | 30 May 2019, 19:18:27 UTC | implemeted 'uncertainty function' | 30 May 2019, 19:18:27 UTC |
| c074ae7 | Yasin Kaymaz | 25 May 2019, 18:11:39 UTC | fixed tree and model input | 25 May 2019, 18:11:39 UTC |
| a7d0a74 | Yasin Kaymaz | 25 May 2019, 14:36:59 UTC | fixed the tree input. | 25 May 2019, 14:36:59 UTC |
| d2e71af | Yasin Kaymaz | 24 May 2019, 19:28:51 UTC | reorg | 24 May 2019, 19:28:51 UTC |
| fac4fe5 | Yasin Kaymaz | 23 May 2019, 20:12:59 UTC | upd | 23 May 2019, 20:12:59 UTC |
| 796e053 | Yasin Kaymaz | 23 May 2019, 20:00:00 UTC | updated quick tutor | 23 May 2019, 20:00:00 UTC |
| 3018f51 | Yasin Kaymaz | 23 May 2019, 17:49:30 UTC | banner update | 23 May 2019, 17:49:30 UTC |
| d437801 | Yasin Kaymaz | 23 May 2019, 17:08:11 UTC | function reorg. update banner | 23 May 2019, 17:08:11 UTC |
| 5415ffb | Yasin Kaymaz | 23 May 2019, 16:28:43 UTC | update to install | 23 May 2019, 16:28:43 UTC |
| 9fbb571 | Yasin Kaymaz | 23 May 2019, 16:25:02 UTC | update to banner | 23 May 2019, 16:25:02 UTC |
| cdaf755 | Yasin Kaymaz | 23 May 2019, 16:24:00 UTC | update to banner | 23 May 2019, 16:24:00 UTC |
| 831411b | Yasin Kaymaz | 23 May 2019, 16:21:04 UTC | added extra folder | 23 May 2019, 16:21:04 UTC |
| 9a58519 | Yasin Kaymaz | 23 May 2019, 16:20:18 UTC | banner | 23 May 2019, 16:20:18 UTC |
| 364e5d1 | Yasin Kaymaz | 23 May 2019, 16:10:15 UTC | Update README.md | 23 May 2019, 16:10:15 UTC |
| afb4408 | Yasin Kaymaz | 23 May 2019, 16:08:34 UTC | Update README.md | 23 May 2019, 16:08:34 UTC |
| a7f3735 | Yasin Kaymaz | 23 May 2019, 16:07:39 UTC | Update README.md | 23 May 2019, 16:07:39 UTC |
| a29e634 | Yasin Kaymaz | 23 May 2019, 16:04:30 UTC | Create README.md | 23 May 2019, 16:04:30 UTC |
| b67a823 | Yasin Kaymaz | 23 May 2019, 15:52:44 UTC | Recolletion of functions | 23 May 2019, 15:52:44 UTC |
| c079bf4 | Yasin Kaymaz | 18 May 2019, 15:01:11 UTC | split the main function into two for training and projection | 18 May 2019, 15:01:11 UTC |
| 7445e96 | Yasin Kaymaz | 10 May 2019, 17:52:07 UTC | finished the single projection function | 10 May 2019, 17:52:07 UTC |
| 6f815e8 | Yasin Kaymaz | 07 May 2019, 17:17:13 UTC | working commit with tree traverser. | 07 May 2019, 17:17:13 UTC |
| e72be38 | Yasin Kaymaz | 26 April 2019, 16:41:44 UTC | first commit | 26 April 2019, 16:41:44 UTC |
