| 9fcef00 | Sheintuch | 05 March 2024, 19:01:39 UTC | updated new version v1.5.6 after pull request to change compute_centroids_distances_model function to capital A in algorithm. | 05 March 2024, 19:01:39 UTC |
| 31d337a | Liron Sheintuch | 05 March 2024, 18:22:17 UTC | Merge pull request #20 from AviAdlakha/master Update compute_centroid_distances_model.m | 05 March 2024, 18:22:17 UTC |
| 0b0bf6d | AviAdlakha | 01 March 2024, 11:04:59 UTC | Update compute_centroid_distances_model.m For new matlab lsqcurvefit now has "options.algorithm" with a capital A. The code fails saying no attribute "Algorithm" in options. So just initialising "options.Algorithm=[ ]" fixed it for me. | 01 March 2024, 11:04:59 UTC |
| 19e7cca | Sheintuch | 18 September 2023, 15:05:45 UTC | updated README. | 18 September 2023, 15:05:45 UTC |
| 634181f | Sheintuch | 18 September 2023, 15:03:08 UTC | updated README file. | 18 September 2023, 15:03:08 UTC |
| 9157746 | Sheintuch | 18 September 2023, 15:01:28 UTC | updated README file to include the error in versions v1.5.0-v.1.5.3. | 18 September 2023, 15:01:28 UTC |
| 5658d2b | Sheintuch | 25 July 2023, 02:52:29 UTC | updated README file and log to new version v1.5.5 | 25 July 2023, 02:52:29 UTC |
| 22d4404 | Sheintuch | 25 July 2023, 02:46:48 UTC | updated README file to new version v1.5.4 | 25 July 2023, 02:46:48 UTC |
| 9da4749 | Sheintuch | 25 July 2023, 02:33:48 UTC | fixed big with rotating cells after FOV alignment. | 25 July 2023, 02:33:48 UTC |
| c352fc0 | Sheintuch | 19 October 2022, 10:22:48 UTC | updated README file and logo to new version v1.5.3. | 19 October 2022, 10:22:48 UTC |
| 5c295bd | Sheintuch | 19 October 2022, 10:13:19 UTC | fixed error of non-defined unrated_spatial_footprints when choosing translations in the alignment type. | 19 October 2022, 10:13:19 UTC |
| 81f1adc | Sheintuch | 19 October 2022, 09:27:56 UTC | changed nansum to sum(omitnan) since nansum does not exist in matlab 2022a. | 19 October 2022, 09:27:56 UTC |
| ea72ee6 | Sheintuch | 19 September 2022, 11:53:39 UTC | updated logo and README file to new version v1.5.2. | 19 September 2022, 11:53:39 UTC |
| 5f9a29e | Sheintuch | 19 September 2022, 11:47:01 UTC | fixed a rare edge case of losing cells from the cell_to_index_map in the final clustering stage. | 19 September 2022, 11:47:01 UTC |
| 15ab208 | Sheintuch | 20 July 2022, 11:08:00 UTC | updated README file. | 20 July 2022, 11:08:00 UTC |
| 96b09ae | Sheintuch | 20 July 2022, 11:04:32 UTC | Merge branch 'master' of https://github.com/zivlab/CellReg | 20 July 2022, 11:04:32 UTC |
| 1fd5f4e | Sheintuch | 20 July 2022, 11:03:32 UTC | updated README file to contain more information on the inputs/outputs of CellReg. | 20 July 2022, 11:03:32 UTC |
| 8439259 | Liron Sheintuch | 01 July 2022, 05:00:49 UTC | Merge pull request #16 from orena1/patch-1 change setup.m to CellReg_setup.m | 01 July 2022, 05:00:49 UTC |
| 0e414ca | Oren Amsalem | 30 June 2022, 20:45:17 UTC | change setup.m to CellReg_setup.m | 30 June 2022, 20:45:17 UTC |
| d003f38 | Sheintuch | 24 March 2022, 14:14:29 UTC | updated LOGO and README file to new version. | 24 March 2022, 14:14:29 UTC |
| 74c7e38 | Sheintuch | 24 March 2022, 14:10:08 UTC | fixed error with adding sessions one by one. | 24 March 2022, 14:10:08 UTC |
| 22aebc2 | Sheintuch | 10 March 2022, 16:48:30 UTC | updated README and logo to new version. | 10 March 2022, 16:48:30 UTC |
| ea9b31c | Liron Sheintuch | 10 March 2022, 16:43:32 UTC | Merge pull request #15 from aloleary93/master Memory efficient version for 2p data | 10 March 2022, 16:43:32 UTC |
| 8e290eb | Alice | 20 February 2022, 18:13:55 UTC | resolving merge issues | 20 February 2022, 18:13:55 UTC |
| 29c69c7 | Alice | 20 February 2022, 16:49:05 UTC | fixing GUI integration issues and display bar issues | 20 February 2022, 16:49:05 UTC |
| f3225a5 | Alice | 20 February 2022, 16:39:17 UTC | fixing GUI integration issues and display bar issues | 20 February 2022, 16:39:17 UTC |
| c05590b | Sheintuch | 02 February 2022, 15:56:12 UTC | updated README and LOGO to new version v1.4.9. | 02 February 2022, 15:56:12 UTC |
| ed85861 | Sheintuch | 02 February 2022, 15:51:54 UTC | edits to format conversion scripts. | 02 February 2022, 15:51:54 UTC |
| 7c13d79 | Liron Sheintuch | 02 February 2022, 15:40:09 UTC | Merge pull request #14 from catubc/master Inscopix file converter added | 02 February 2022, 15:40:09 UTC |
| 8e95659 | Sheintuch | 02 February 2022, 15:05:20 UTC | changed sample data path definition in demo script. | 02 February 2022, 15:05:20 UTC |
| 402e3bd | catubc | 02 February 2022, 14:32:56 UTC | Inscopix file converter added | 02 February 2022, 14:32:56 UTC |
| a308e36 | Sheintuch | 27 January 2022, 07:39:35 UTC | added helper directory to CellReg setup. | 27 January 2022, 07:39:35 UTC |
| feed538 | Sheintuch | 26 January 2022, 16:16:08 UTC | moved format converter to helper directory and updated README and log to new version v1.4.8. | 26 January 2022, 16:16:08 UTC |
| 2ab9a22 | Sheintuch | 26 January 2022, 15:42:44 UTC | updated logo and README file. | 26 January 2022, 15:42:44 UTC |
| c802c13 | Sheintuch | 26 January 2022, 15:33:57 UTC | Revert "updated setup file to include new helper functions." This reverts commit 3b7d336544d65dd3d765a2dd6dc74142e96e5efa. | 26 January 2022, 15:33:57 UTC |
| de8b971 | Sheintuch | 26 January 2022, 15:33:30 UTC | Revert "Merge branch 'master' of https://github.com/zivlab/CellReg" This reverts commit fa0820150cb06ddbdaca2037bea50f3828c7bab0, reversing changes made to 3b7d336544d65dd3d765a2dd6dc74142e96e5efa. | 26 January 2022, 15:33:30 UTC |
| 27d1f9d | Sheintuch | 26 January 2022, 15:32:37 UTC | Merge branch 'master' of https://github.com/zivlab/CellReg | 26 January 2022, 15:32:37 UTC |
| b3b0f90 | Sheintuch | 26 January 2022, 15:27:35 UTC | reverted back to v1.4.6. | 26 January 2022, 15:27:35 UTC |
| e35d726 | Sheintuch | 26 January 2022, 12:11:08 UTC | updated logo and README to new version. | 26 January 2022, 12:11:08 UTC |
| fa08201 | Sheintuch | 26 January 2022, 12:06:20 UTC | Merge branch 'master' of https://github.com/zivlab/CellReg | 26 January 2022, 12:06:20 UTC |
| 3b7d336 | Sheintuch | 26 January 2022, 12:03:26 UTC | updated setup file to include new helper functions. | 26 January 2022, 12:03:26 UTC |
| 2a65e52 | Liron Sheintuch | 26 January 2022, 12:02:39 UTC | Merge pull request #11 from aloleary93/master adding options to save footprint data to file at each step | 26 January 2022, 12:02:39 UTC |
| e598c65 | Sheintuch | 21 January 2022, 15:53:15 UTC | added a script that converts the output of CNMF-e our Suite2P to the format of the input required by CellReg. | 21 January 2022, 15:53:15 UTC |
| e6f03f6 | Sheintuch | 21 January 2022, 14:46:27 UTC | updated README and logo for the new version. | 21 January 2022, 14:46:27 UTC |
| 04d742a | Sheintuch | 21 January 2022, 14:42:47 UTC | fixed error with lsqcurvefit by using options.Algorithm instead of options.algorithm. | 21 January 2022, 14:42:47 UTC |
| 43f6510 | Alice | 05 January 2022, 11:04:31 UTC | adding options to save footprint data to file at each step of processing to save memory overhead. Allows processing of larger files without memory errors | 05 January 2022, 11:04:31 UTC |
| a2c5e01 | Sheintuch | 17 August 2021, 13:56:49 UTC | updated README and LOGO to v1.4.5. | 17 August 2021, 13:56:49 UTC |
| cdf7f09 | Sheintuch | 17 August 2021, 13:48:49 UTC | updated version LOGO. | 17 August 2021, 13:48:49 UTC |
| 2ca02f4 | Sheintuch | 17 August 2021, 13:30:31 UTC | updated README file to new versin. | 17 August 2021, 13:30:31 UTC |
| d7ecbf4 | Sheintuch | 17 August 2021, 13:07:52 UTC | added comment to the spatial correlations modeling function. | 17 August 2021, 13:07:52 UTC |
| 59f255c | Sheintuch | 17 August 2021, 13:06:18 UTC | fixed bug after adding the older spatial correlation model for cases that EM doesn't work. | 17 August 2021, 13:06:18 UTC |
| c4125d1 | Sheintuch | 17 August 2021, 12:23:16 UTC | added the older spatial correlation model for cases that EM doesn't work. | 17 August 2021, 12:23:16 UTC |
| c54b9c3 | Sheintuch | 17 August 2021, 11:48:02 UTC | fixed bug for spatial correlations >1. | 17 August 2021, 11:48:02 UTC |
| 9eed4c0 | Sheintuch | 16 August 2021, 12:20:10 UTC | fixed bug with spatial correlations >1. | 16 August 2021, 12:20:10 UTC |
| 8557559 | Sheintuch | 24 May 2021, 15:42:37 UTC | added SampleResults folder. | 24 May 2021, 15:42:37 UTC |
| c369544 | Sheintuch | 24 May 2021, 15:36:06 UTC | updated README file. | 24 May 2021, 15:36:06 UTC |
| 9ee3843 | Sheintuch | 24 May 2021, 15:22:36 UTC | deleted old sample results and figures. | 24 May 2021, 15:22:36 UTC |
| fe036b9 | Sheintuch | 24 May 2021, 15:08:06 UTC | defined names of files before loop in demo script. | 24 May 2021, 15:08:06 UTC |
| 5530f60 | Sheintuch | 24 May 2021, 15:01:19 UTC | deleted comments from old message boxes. | 24 May 2021, 15:01:19 UTC |
| 8e6d7d1 | Sheintuch | 24 May 2021, 14:33:42 UTC | Merge pull request #10 from bouromain/cellreg_rb Cellreg rb | 24 May 2021, 14:33:42 UTC |
| 48a766c | Sheintuch | 24 May 2021, 13:41:36 UTC | Update estimate_number_of_bins.m ensure that the number of cells is taken and not a different dimension. | 24 May 2021, 13:41:36 UTC |
| e0f1187 | bouromain | 14 April 2021, 11:00:37 UTC | remove some old code and comments | 14 April 2021, 11:00:37 UTC |
| 5682f58 | bouromain | 13 April 2021, 20:27:04 UTC | small spelling typo | 13 April 2021, 20:27:04 UTC |
| 608d55f | bouromain | 13 April 2021, 20:18:52 UTC | Speed optimisation for adjust_FOV_size.m | 13 April 2021, 20:18:52 UTC |
| 099657c | bouromain | 13 April 2021, 19:19:31 UTC | Speed optimisation for normalize_spatial_footprints.m | 13 April 2021, 19:19:31 UTC |
| b49358f | bouromain | 13 April 2021, 18:43:53 UTC | Speed optimisation for compute_footprint_projection.m | 13 April 2021, 18:43:53 UTC |
| 29034e8 | bouromain | 13 April 2021, 18:04:04 UTC | comment typo correction and add titles to uigetfile in CellReg.m | 13 April 2021, 18:04:04 UTC |
| 51ce96a | bouromain | 13 April 2021, 17:22:01 UTC | better handleing of timed msgbox | 13 April 2021, 17:22:01 UTC |
| 4e2a899 | bouromain | 12 April 2021, 19:03:59 UTC | demo correction and window closing | 12 April 2021, 19:03:59 UTC |
| e09d249 | bouromain | 12 April 2021, 14:17:35 UTC | correction for path in demo.m file. It now work on linux and with the smple data porvided in the repo | 12 April 2021, 14:17:35 UTC |
| ea207db | admin | 06 April 2021, 16:57:35 UTC | updated README and LOGO to new version with fixed setup. | 06 April 2021, 16:57:35 UTC |
| 5b18414 | Sheintuch | 06 April 2021, 16:52:31 UTC | Merge pull request #9 from hahnjohannes/patch-1 Fix for CellReg_setup | 06 April 2021, 16:52:31 UTC |
| e93c7d4 | hahnjohannes | 06 April 2021, 14:28:21 UTC | Setup doesn't work after name change setup.m was changed to CellReg_setup.m but the reference in the file wasn't changed. | 06 April 2021, 14:28:21 UTC |
| 52f96d0 | bouromain | 02 April 2021, 13:39:53 UTC | .gitignore change again | 02 April 2021, 13:39:53 UTC |
| a514bbf | bouromain | 02 April 2021, 13:38:44 UTC | .gitignore change | 02 April 2021, 13:38:44 UTC |
| 05975de | bouromain | 02 April 2021, 13:35:40 UTC | helper function for suite2p data | 02 April 2021, 13:35:40 UTC |
| 7057547 | bouromain | 02 April 2021, 13:35:02 UTC | automatically close some windows and make helper function for suite2p data | 02 April 2021, 13:35:02 UTC |
| e536654 | admin | 30 March 2021, 09:54:24 UTC | updated README file and log for new version v1.4.1. | 30 March 2021, 09:54:24 UTC |
| e6e14f6 | admin | 30 March 2021, 09:46:01 UTC | fixed bug in 'lsqcurvefit' for Matlab 2020b. | 30 March 2021, 09:46:01 UTC |
| 98845b5 | admin | 16 February 2021, 12:08:38 UTC | updated SampleResults according to new version with EM. | 16 February 2021, 12:08:38 UTC |
| 1276df2 | admin | 16 February 2021, 11:25:26 UTC | discarding negative spatial correlations only for constructing the models but not for calculating p_same for each pair. | 16 February 2021, 11:25:26 UTC |
| b0439e7 | admin | 15 February 2021, 13:54:16 UTC | changed logo. | 15 February 2021, 13:54:16 UTC |
| 59e89fc | admin | 15 February 2021, 12:54:03 UTC | updated README file. | 15 February 2021, 12:54:03 UTC |
| 15e991c | admin | 15 February 2021, 12:50:28 UTC | fixed default paramters. | 15 February 2021, 12:50:28 UTC |
| 757a628 | admin | 15 February 2021, 12:29:44 UTC | changed the code to support EM for the distributions of spatial correlations both for 1-photon and 2-photon data. | 15 February 2021, 12:29:44 UTC |
| d1f7b79 | Sheintuch | 15 February 2021, 09:26:59 UTC | Merge pull request #7 from jg-854/expectation-maximization Added Expectation-Maximization Implementation for Spatial Correlations | 15 February 2021, 09:26:59 UTC |
| 0e3a3a0 | jg-854 | 14 February 2021, 19:19:11 UTC | Added Expectation-Maximization Implementation for Spatial Correlations Updated `compute_spatial_correlations_model.m' to now fit the model via Expectation-Maximizaion (EM). This requires adding an extra file `estimate_beta_mixture_params.m', which is used in the Maximisation step of the algorithm. Tested on sample data with no errors. | 14 February 2021, 19:19:11 UTC |
| cc460a9 | admin | 20 September 2019, 10:06:16 UTC | changed maximal distance default value to 14 microns. | 20 September 2019, 10:06:16 UTC |
| 9db9be5 | admin | 03 September 2019, 15:37:48 UTC | changed maximal distance to 14 microns instead of 12. | 03 September 2019, 15:37:48 UTC |
| 34ff543 | Liron Sheintuch | 14 February 2019, 12:04:46 UTC | updated README file to new version. | 14 February 2019, 12:04:46 UTC |
| 293274c | Liron Sheintuch | 14 February 2019, 12:03:52 UTC | changed default value of minimal correlation for alignment to 0.2 instead of 0.3. | 14 February 2019, 12:03:52 UTC |
| 6036e60 | Liron Sheintuch | 30 December 2018, 13:42:24 UTC | updated README file. | 30 December 2018, 13:42:24 UTC |
| a6206d4 | Liron Sheintuch | 30 December 2018, 13:40:58 UTC | updated setup file name to 'CellReg_setup' to avoid ambiguities with other setup files. | 30 December 2018, 13:40:58 UTC |
| 1f9b516 | Liron Sheintuch | 25 October 2018, 10:12:49 UTC | fixed tooltip in GUI. | 25 October 2018, 10:12:49 UTC |
| 735dc9d | Liron Sheintuch | 16 September 2018, 08:27:57 UTC | updated README file to v1.3.5. | 16 September 2018, 08:27:57 UTC |
| da22613 | Liron Sheintuch | 16 September 2018, 08:26:32 UTC | fixed bug of spatial correlation intersection at correlation=1.0. | 16 September 2018, 08:26:32 UTC |
| 28d0211 | Liron Sheintuch | 16 September 2018, 08:02:33 UTC | fixed bug when loading aligned/modeled data from a different folder. | 16 September 2018, 08:02:33 UTC |
| 31058c3 | Liron Sheintuch | 13 September 2018, 13:17:03 UTC | updated README file. | 13 September 2018, 13:17:03 UTC |
| a0c06d2 | Liron Sheintuch | 21 March 2018, 14:26:21 UTC | fixed bug with plotting of displacement fields in non-rigid transformations. | 21 March 2018, 14:26:21 UTC |
| 72bdc85 | Liron Sheintuch | 21 March 2018, 13:57:56 UTC | added plot for displacement fields in non-rigid transformation. | 21 March 2018, 13:57:56 UTC |
