| e8dedcc | zolotarov | 15 July 2015, 15:36:47 UTC | Updated README to include a link to the paper | 15 July 2015, 15:36:47 UTC |
| d12dcd7 | Yevgen Zolotarov | 22 May 2015, 19:43:07 UTC | Cleaned up old files | 22 May 2015, 19:43:07 UTC |
| f19b4be | Yevgen Zolotarov | 25 March 2015, 17:52:39 UTC | Added supp table and scripts that generate it | 25 March 2015, 17:52:39 UTC |
| c79fe14 | Yevgen Zolotarov | 08 March 2015, 23:30:42 UTC | added hmmer and blast results for dehydrin matches | 08 March 2015, 23:30:42 UTC |
| e39e1cf | Yevgen Zolotarov | 25 February 2015, 01:15:09 UTC | Added a script to analyze frequency of dehydrin domains | 25 February 2015, 01:15:09 UTC |
| 0dcfe6f | Yevgen Zolotarov | 20 February 2015, 19:20:52 UTC | Cleaned up | 20 February 2015, 19:20:52 UTC |
| b76e99d | Yevgen Zolotarov | 19 February 2015, 23:44:37 UTC | Added BLAST results from Decypher and NCBI BLAST online | 19 February 2015, 23:44:37 UTC |
| a4fc87f | Yevgen Zolotarov | 19 February 2015, 23:42:13 UTC | Added blast annot script | 19 February 2015, 23:42:13 UTC |
| 630da69 | Yevgen Zolotarov | 18 December 2014, 18:55:54 UTC | Added gene list for supplemental table | 18 December 2014, 18:55:54 UTC |
| ff4de66 | Yevgen Zolotarov | 16 December 2014, 21:15:00 UTC | Added result matrices and figures | 16 December 2014, 21:15:00 UTC |
| 4bbd3a2 | Yevgen Zolotarov | 14 November 2014, 19:16:30 UTC | update DB, set use=No to incomplete Pabies genes | 14 November 2014, 19:16:30 UTC |
| d1fce88 | Yevgen Zolotarov | 13 November 2014, 17:38:56 UTC | updated meme results | 13 November 2014, 17:38:56 UTC |
| 21c2f7b | Yevgen Zolotarov | 13 November 2014, 17:37:04 UTC | cleaned up categorized | 13 November 2014, 17:37:04 UTC |
| 3769cfe | Yevgen Zolotarov | 13 November 2014, 17:34:59 UTC | removed old figures from results | 13 November 2014, 17:34:59 UTC |
| 7ef1983 | Yevgen Zolotarov | 13 November 2014, 17:33:54 UTC | removed couples docs | 13 November 2014, 17:33:54 UTC |
| 257cb72 | Yevgen Zolotarov | 12 November 2014, 23:34:24 UTC | cleaned up old files | 12 November 2014, 23:34:24 UTC |
| 1e04ce2 | Yevgen Zolotarov | 12 November 2014, 23:33:55 UTC | updated comment | 12 November 2014, 23:33:55 UTC |
| 245c4cc | Yevgen Zolotarov | 11 November 2014, 20:44:41 UTC | Removed Hvulgare MLOC_14884 from SKn and reran the analyses | 11 November 2014, 20:44:41 UTC |
| b0de36e | Yevgen Zolotarov | 11 November 2014, 20:44:26 UTC | Removed Hvulgare MLOC_14884 from SKn and reran the analyses | 11 November 2014, 20:44:26 UTC |
| 7d4412c | Yevgen Zolotarov | 11 November 2014, 02:22:01 UTC | updated comments | 11 November 2014, 02:22:01 UTC |
| 2058d21 | Yevgen Zolotarov | 06 November 2014, 22:20:42 UTC | removed figures directory from root | 06 November 2014, 22:20:42 UTC |
| ce4d24b | Yevgen Zolotarov | 06 November 2014, 22:19:49 UTC | Added a new comments files | 06 November 2014, 22:19:49 UTC |
| 1d9872a | Yevgen Zolotarov | 06 November 2014, 22:17:32 UTC | Cleaned up the repository | 06 November 2014, 22:17:32 UTC |
| 0b8a662 | Yevgen Zolotarov | 06 November 2014, 22:14:36 UTC | Reran Seeder, MEME and Weeder analyses | 06 November 2014, 22:14:36 UTC |
| 7d294b4 | Yevgen Zolotarov | 05 November 2014, 21:44:36 UTC | added missing sequence to promoter files | 05 November 2014, 21:44:36 UTC |
| 0758df2 | Yevgen Zolotarov | 04 November 2014, 16:43:24 UTC | Added latest No fields to the DB | 04 November 2014, 16:43:24 UTC |
| f9f03cd | Yevgen Zolotarov | 22 September 2014, 02:22:08 UTC | Added KS and Kn figures | 22 September 2014, 02:22:08 UTC |
| efe4685 | Yevgen Zolotarov | 22 September 2014, 02:21:22 UTC | Added more basic and acidic results | 22 September 2014, 02:21:22 UTC |
| 60cccbc | Yevgen Zolotarov | 21 September 2014, 21:51:04 UTC | removed old matrices and figures | 21 September 2014, 21:51:04 UTC |
| 109e80f | Yevgen Zolotarov | 21 September 2014, 21:37:58 UTC | added Weeder results | 21 September 2014, 21:37:58 UTC |
| de893ed | Yevgen Zolotarov | 19 September 2014, 20:56:52 UTC | Removed None sequences from basic and acidic | 19 September 2014, 20:56:52 UTC |
| 3a1d761 | Yevgen Zolotarov | 19 September 2014, 20:21:04 UTC | Only basic and acidic promoters from latest genomes | 19 September 2014, 20:21:04 UTC |
| d51ac11 | Yevgen Zolotarov | 19 September 2014, 20:10:35 UTC | Added basic and acidic promoters | 19 September 2014, 20:10:35 UTC |
| ff39da4 | Yevgen Zolotarov | 19 September 2014, 20:09:27 UTC | Updated comments | 19 September 2014, 20:09:27 UTC |
| 86e6876 | Yevgen Zolotarov | 19 September 2014, 19:56:30 UTC | Remove meme prev results | 19 September 2014, 19:56:30 UTC |
| fe89adc | Yevgen Zolotarov | 19 September 2014, 19:56:04 UTC | Removed seeder prev results | 19 September 2014, 19:56:04 UTC |
| 86d6cb7 | Yevgen Zolotarov | 19 September 2014, 19:52:35 UTC | Removed old Weeder results | 19 September 2014, 19:52:35 UTC |
| 952b131 | Yevgen Zolotarov | 19 September 2014, 19:47:27 UTC | added seeder and meme results | 19 September 2014, 19:47:27 UTC |
| 89f45c2 | Yevgen Zolotarov | 18 September 2014, 22:13:22 UTC | removed a very short promoter MA_4978040g0010|Pabies | 18 September 2014, 22:13:22 UTC |
| 49bd505 | Yevgen Zolotarov | 18 September 2014, 21:14:43 UTC | Cleaned up old files | 18 September 2014, 21:14:43 UTC |
| bf4cdcc | Yevgen Zolotarov | 18 September 2014, 21:07:21 UTC | Added new promoters | 18 September 2014, 21:07:21 UTC |
| be0e4c4 | Yevgen Zolotarov | 18 September 2014, 21:06:11 UTC | Removed promoters | 18 September 2014, 21:06:11 UTC |
| d16c9d3 | Yevgen Zolotarov | 18 September 2014, 21:04:58 UTC | Remove previous results | 18 September 2014, 21:04:58 UTC |
| bd4f5c9 | Yevgen Zolotarov | 18 September 2014, 19:15:57 UTC | updated DB | 18 September 2014, 19:15:57 UTC |
| b2f519c | Yevgen Zolotarov | 19 August 2014, 16:10:05 UTC | updated DB with P. taeda | 19 August 2014, 16:10:05 UTC |
| cb255b5 | Yevgen Zolotarov | 15 July 2014, 04:20:27 UTC | Updated database | 15 July 2014, 04:20:27 UTC |
| c11c9b9 | Yevgen Zolotarov | 07 July 2014, 16:38:41 UTC | Organized the sequences into an sqlite3 database | 07 July 2014, 16:38:41 UTC |
| c4c144e | Yevgen Zolotarov | 30 June 2014, 15:46:30 UTC | Modified deflines to be standard: gene|transcript|species | 30 June 2014, 15:46:30 UTC |
| 252a01b | Yevgen Zolotarov | 30 June 2014, 15:44:27 UTC | Modified deflines to be standard: gene|transcript|species | 30 June 2014, 15:44:27 UTC |
| 825b6cd | Yevgen Zolotarov | 30 June 2014, 15:43:21 UTC | Modified deflines to be standard: gene|transcript|species | 30 June 2014, 15:43:21 UTC |
| d492d1d | Yevgen Zolotarov | 30 June 2014, 15:37:37 UTC | Modified deflines to be standard: gene|transcript|species | 30 June 2014, 15:37:37 UTC |
| 9f9eb04 | Yevgen Zolotarov | 30 June 2014, 15:35:41 UTC | Modified deflines to be standard: gene|transcript|species | 30 June 2014, 15:35:41 UTC |
| 5068be0 | Yevgen Zolotarov | 13 June 2014, 20:52:23 UTC | removed duplicate sequence Bradi1g13330.2 | 13 June 2014, 20:52:23 UTC |
| 449fbdc | Yevgen Zolotarov | 11 April 2014, 18:59:06 UTC | Added CDSs | 11 April 2014, 18:59:06 UTC |
| f5ae22c | Yevgen Zolotarov | 09 April 2014, 03:10:18 UTC | doc added on downloading CDSs | 09 April 2014, 03:10:18 UTC |
| 00f9004 | Yevgen Zolotarov | 11 December 2013, 14:43:21 UTC | Updated all figures | 11 December 2013, 14:43:21 UTC |
| 4d2f777 | Yevgen Zolotarov | 10 December 2013, 14:52:23 UTC | Reran de novo with fixed promoters | 10 December 2013, 14:52:23 UTC |
| 3969ca0 | Yevgen Zolotarov | 05 December 2013, 22:52:02 UTC | moved results to prev_results | 05 December 2013, 22:52:02 UTC |
| 89225cc | Yevgen Zolotarov | 05 December 2013, 22:47:16 UTC | Cleaned up MEME | 05 December 2013, 22:47:16 UTC |
| d8659c4 | Yevgen Zolotarov | 28 November 2013, 01:50:54 UTC | updated MEME_backgroun_cunter.py | 28 November 2013, 01:50:54 UTC |
| 97c07a2 | Yevgen Zolotarov | 27 November 2013, 05:20:42 UTC | Added P.a bies files to common promoter files | 27 November 2013, 05:20:42 UTC |
| a55de86 | Yevgen Zolotarov | 27 November 2013, 05:15:42 UTC | Added P. abies and cleaned up | 27 November 2013, 05:15:42 UTC |
| d78341c | Yevgen Zolotarov | 25 November 2013, 22:49:30 UTC | MDP0000126135 in SKn is the same as MDP0000770493 | 25 November 2013, 22:49:30 UTC |
| 3ef40fd | Yevgen Zolotarov | 25 November 2013, 22:46:45 UTC | Updated Bradi4g22280 and MDP0000629961 promoters in SKn and YnSKn, respectively | 25 November 2013, 22:46:45 UTC |
| f7f18c5 | Yevgen Zolotarov | 29 October 2013, 21:52:36 UTC | acidic/basic matrices | 29 October 2013, 21:52:36 UTC |
| ff8545e | Yevgen Zolotarov | 29 October 2013, 17:46:55 UTC | Removed KS_Seeder_1 from results | 29 October 2013, 17:46:55 UTC |
| 3e5d75f | Yevgen Zolotarov | 29 October 2013, 17:44:01 UTC | added WebLogo figures | 29 October 2013, 17:44:01 UTC |
| 90b9a78 | Yevgen Zolotarov | 09 October 2013, 17:28:09 UTC | added species references | 09 October 2013, 17:28:09 UTC |
| e47b9d7 | Yevgen Zolotarov | 02 October 2013, 01:36:44 UTC | ran MEME on acidic & basic | 02 October 2013, 01:36:44 UTC |
| 4a46f88 | Yevgen Zolotarov | 30 September 2013, 00:54:33 UTC | identified promoters by pI | 30 September 2013, 00:54:33 UTC |
| 86c67e7 | Yevgen Zolotarov | 13 September 2013, 15:50:55 UTC | added full species list | 13 September 2013, 15:50:55 UTC |
| 7400de9 | Yevgen Zolotarov | 13 September 2013, 15:40:57 UTC | species file changed | 13 September 2013, 15:40:57 UTC |
| 953eb29 | Yevgen Zolotarov | 13 September 2013, 15:37:42 UTC | updated species list | 13 September 2013, 15:37:42 UTC |
| 669785a | Yevgen Zolotarov | 13 September 2013, 15:23:17 UTC | added dehydrin per species count script | 13 September 2013, 15:23:17 UTC |
| aba1314 | Yevgen Zolotarov | 10 September 2013, 23:55:48 UTC | Weeder and MEME on KS with Phvul | 10 September 2013, 23:55:48 UTC |
| c62a347 | Yevgen Zolotarov | 10 September 2013, 22:35:28 UTC | Updated matrices_v2 | 10 September 2013, 22:35:28 UTC |
| b0427cb | Yevgen Zolotarov | 10 September 2013, 22:33:14 UTC | Ran Seeder on KS with Phvul.004G051100 promoter | 10 September 2013, 22:33:14 UTC |
| 97c06c9 | Yevgen Zolotarov | 10 September 2013, 20:35:43 UTC | Moved Phvul.004G051100 to KS, new file KS_20130910.fas | 10 September 2013, 20:35:43 UTC |
| 3dbfbb7 | Yevgen Zolotarov | 07 September 2013, 03:21:50 UTC | added list of species and CRT counter | 07 September 2013, 03:21:50 UTC |
| a40b122 | Yevgen Zolotarov | 20 August 2013, 12:19:26 UTC | update docs | 20 August 2013, 12:19:26 UTC |
| 11f3fda | Yevgen Zolotarov | 29 July 2013, 17:07:55 UTC | ran de novo analyses for Kn without Phvul.004G051100 promoter | 29 July 2013, 17:07:55 UTC |
| 9933664 | Yevgen Zolotarov | 29 July 2013, 17:07:31 UTC | ran de novo analyses for Kn without Phvul.004G051100 promoter | 29 July 2013, 17:07:31 UTC |
| e31d301 | Yevgen Zolotarov | 26 July 2013, 19:49:46 UTC | removed Phvul.004G051100 from kn promoters | 26 July 2013, 19:49:46 UTC |
| e9c0772 | Yevgen Zolotarov | 26 July 2013, 19:43:05 UTC | moved Phvul.004G051100 from Kn to uncategorized since it is K2S | 26 July 2013, 19:43:05 UTC |
| f46005b | Yevgen Zolotarov | 24 July 2013, 18:32:57 UTC | cleaned-up some files | 24 July 2013, 18:32:57 UTC |
| bfbec1e | Yevgen Zolotarov | 24 July 2013, 18:30:31 UTC | updated abbreviations | 24 July 2013, 18:30:31 UTC |
| 82af7aa | Yevgen Zolotarov | 17 June 2013, 13:51:10 UTC | added YnSKn and SKn MEME with 100 occurrences | 17 June 2013, 13:51:10 UTC |
| 9476e38 | Yevgen Zolotarov | 11 June 2013, 18:07:25 UTC | Merge branch 'master' of http://132.206.29.83:80/yzolotarov/dehydrin_promoters | 11 June 2013, 18:07:25 UTC |
| 5cc0c5c | Yevgen Zolotarov | 11 June 2013, 18:06:45 UTC | added KS with Oxytropis results | 11 June 2013, 18:06:45 UTC |
| 9beca01 | Yevgen Zolotarov | 11 June 2013, 18:03:48 UTC | updated de novo motif discovery doc | 11 June 2013, 18:03:48 UTC |
| a8cd1c0 | Yevgen Zolotarov | 11 June 2013, 17:37:26 UTC | added Oxytropis KS promoters | 11 June 2013, 17:37:26 UTC |
| 463e9df | Yevgen Zolotarov | 11 June 2013, 17:34:51 UTC | updated matrices.md | 11 June 2013, 17:34:51 UTC |
| 6027911 | Yevgen Zolotarov | 10 June 2013, 00:13:25 UTC | updated parsers | 10 June 2013, 00:13:25 UTC |
| 2a83caf | Yevgen Zolotarov | 09 June 2013, 23:51:02 UTC | added KS no 474716 MEME and Weeder results | 09 June 2013, 23:51:02 UTC |
| ce28fc6 | Yevgen Zolotarov | 09 June 2013, 23:50:40 UTC | added KS no 474716 MEME and Weeder results | 09 June 2013, 23:50:40 UTC |
| 824c956 | Yevgen Zolotarov | 09 June 2013, 23:16:03 UTC | updated scripts to print out evalues with matrix names | 09 June 2013, 23:16:03 UTC |
| a1e3d7e | Yevgen Zolotarov | 09 June 2013, 23:12:46 UTC | all dehydrins seeder analyssi | 09 June 2013, 23:12:46 UTC |
| f5a2bd5 | Yevgen Zolotarov | 07 June 2013, 15:53:47 UTC | Removed 474716 from KS promoters and made a new file | 07 June 2013, 15:53:47 UTC |
| 32b1f57 | Yevgen Zolotarov | 07 June 2013, 15:47:31 UTC | Added matrices results | 07 June 2013, 15:47:31 UTC |
| d894b29 | Yevgen Zolotarov | 23 April 2013, 14:38:11 UTC | Added parser scripts | 23 April 2013, 14:38:11 UTC |
