https://github.com/ViennaRNA/ViennaRNA
Release v2.2.8 created by Ronny Lorenz on 02 August 2016, 08:53:48 UTC
This is version 2.2.8
The following things have changed: Programs - Fix bad memory access in RNAalifold - Fix regression in RNAalifold to restore covariance contribution ratio determination for circular RNA alignments - Changed output of RNAsubopt in energy-band enumeration mode to print MFE and energy range in kcal/mol instead of 10cal/mol - Include latest Kinfold sources that make use of v3.0 API, therefore speeding up runtime substantially - Re-activate warnings in RNAeval when non-canonical base pairs are encountered Library - Fix syntactic incompatibilities that potentially prevented compilation with compilers other than gcc - Add function to compare nucleotides encoded in IUPAC format - Fix regression in energy evaluation for circular RNA sequences - Fix regression in suboptimal structure enumeration for circular RNAs - Allow for P i-j k-l commands in constraint definition files - Make free energy evaluation functions polymorphic - Add free energy evaluation functions that allow for specifying verbosity level - Secure functions in alphabet.c against NULL pointer arguments - Fix incompatibility with swig ≥ 3.0.9 - Fix memory leak in swig-generated scripting language interface(s) for user-provided target language soft-constraint callbacks - Expose additional functions to swig-generated scripting language interface(s) - Build Python3 interface by default - Start of more comprehensive scripting language interface documentation - Fix linking of python2/python3 interfaces when libpython is in non-standard directory Package - Restructured viennarna.spec for RPM based distributions - Several syntactic changes in the implementation to minimize compiler warnings - Fix --with-*/--without-* and --enable-*/--disable-* configure script behavior
Target: f06beb265f1f88a4fa3cfe1fb9f5cd27950275af
Directory: e1484d3b932691f116ffa742407515c323943aa2
Directory: e1484d3b932691f116ffa742407515c323943aa2
