00ad2b4 | sebschmi | 09 August 2022, 10:48:53 UTC | Update README.md | 09 August 2022, 10:48:53 UTC |
14f925d | sebschmi | 09 August 2022, 10:47:13 UTC | Update README.md | 09 August 2022, 10:47:13 UTC |
33a37c2 | Sebastian Schmidt | 09 August 2022, 10:27:50 UTC | Fix optimised GFA output of reverse complement. | 09 August 2022, 10:27:50 UTC |
3fe9418 | Sebastian Schmidt | 09 August 2022, 09:52:13 UTC | Fix not missed nodes being reported instead of missed ones. | 09 August 2022, 09:52:13 UTC |
544d80b | Sebastian Schmidt | 09 August 2022, 08:48:36 UTC | Add staged parallelism mode and Dijkstra performance tracking. | 09 August 2022, 08:48:36 UTC |
b2e7e30 | Sebastian Schmidt | 08 August 2022, 07:56:50 UTC | Remove unused parameters from compute_dijkstras function. | 08 August 2022, 07:56:50 UTC |
c48e384 | Sebastian Schmidt | 08 August 2022, 06:59:59 UTC | Remove superfluous output when loading graph. | 08 August 2022, 06:59:59 UTC |
f2367bd | Sebastian Schmidt | 05 August 2022, 11:38:07 UTC | Update genome-graph to fix bcalm2 parsing bug. | 05 August 2022, 11:38:07 UTC |
c1fae12 | Sebastian Schmidt | 04 August 2022, 12:39:13 UTC | Add special input option for bcalm2 files to parse the file faster. | 04 August 2022, 12:39:13 UTC |
ab61184 | Sebastian Schmidt | 10 May 2022, 07:22:54 UTC | Release 1.2.0 matchtigs@1.2.0 Generated by cargo-workspaces | 10 May 2022, 07:22:54 UTC |
ff72aa3 | Sebastian Schmidt | 10 May 2022, 07:19:42 UTC | Update readme. | 10 May 2022, 07:19:42 UTC |
02f10ee | Sebastian Schmidt | 03 May 2022, 08:27:55 UTC | Add eulertigs to CLI and libs. | 03 May 2022, 08:27:55 UTC |
7379e1f | Sebastian Schmidt | 03 May 2022, 08:08:44 UTC | Implement Eulertigs algorithm. (to be published soon :) ) | 03 May 2022, 08:08:44 UTC |
28f4f29 | Sebastian Schmidt | 03 May 2022, 07:49:51 UTC | Update README.md. | 03 May 2022, 07:49:51 UTC |
d605e5a | Sebastian Schmidt | 03 May 2022, 07:48:08 UTC | Add CI script. | 03 May 2022, 07:48:08 UTC |
52d616b | Sebastian Schmidt | 03 May 2022, 05:59:38 UTC | Refactor different tig algos into separate modules. | 03 May 2022, 05:59:38 UTC |
a3f28ac | Sebastian Schmidt | 05 April 2022, 12:41:29 UTC | Add test for breaking edge algorithm. | 05 April 2022, 12:41:29 UTC |
336aa0d | Sebastian Schmidt | 30 March 2022, 10:07:21 UTC | Release 1.1.0 matchtigs@1.1.0 Generated by cargo-workspaces | 30 March 2022, 10:07:21 UTC |
1a3a21f | Sebastian Schmidt | 30 March 2022, 10:03:18 UTC | Update dependencies. | 30 March 2022, 10:03:18 UTC |
52182b8 | Sebastian Schmidt | 30 March 2022, 09:56:28 UTC | Update README. | 30 March 2022, 09:56:28 UTC |
284504e | Sebastian Schmidt | 30 March 2022, 09:53:33 UTC | Use correct types for file paths. | 30 March 2022, 09:53:33 UTC |
7b689a3 | Sebastian Schmidt | 30 March 2022, 09:03:17 UTC | Fix fasta output. | 30 March 2022, 09:03:17 UTC |
9388457 | Sebastian Schmidt | 30 March 2022, 08:06:28 UTC | Optionally output bitvector of duplicate kmers. | 30 March 2022, 08:06:28 UTC |
599e76e | Sebastian Schmidt | 08 March 2022, 11:19:15 UTC | Format. | 08 March 2022, 11:19:15 UTC |
c8e70ca | Sebastian Schmidt | 08 March 2022, 11:17:49 UTC | Update dependencies. | 08 March 2022, 11:17:49 UTC |
a755b51 | Sebastian Schmidt | 15 February 2022, 11:24:49 UTC | Allow to use a hashbrown::HashMap to store dijkstra node weights. | 15 February 2022, 11:24:49 UTC |
94afdfa | Sebastian Schmidt | 15 February 2022, 11:10:55 UTC | Allow to choose dijkstra data structures more dynamically. | 15 February 2022, 11:10:55 UTC |
7fd6e42 | Sebastian Schmidt | 15 February 2022, 10:03:37 UTC | Add possibility to exchange Dijkstra node weight array. | 15 February 2022, 10:03:37 UTC |
b34095c | Sebastian Schmidt | 15 February 2022, 09:53:09 UTC | Add possibility to exchange Dijkstra heap. | 15 February 2022, 09:53:09 UTC |
540cae3 | Sebastian Schmidt | 09 February 2022, 12:28:00 UTC | Update to separated omnitig and graph crates. | 09 February 2022, 12:28:00 UTC |
deaac97 | Sebastian Schmidt | 09 February 2022, 11:03:11 UTC | Try out Rust's new format strings. | 09 February 2022, 11:03:23 UTC |
3ce0404 | sebschmi | 10 January 2022, 11:28:25 UTC | Add preprint citation | 10 January 2022, 11:28:25 UTC |
a4803a4 | Sebastian Schmidt | 02 December 2021, 09:49:46 UTC | Release 1.0.0 matchtigs@1.0.0 Generated by cargo-workspaces | 02 December 2021, 09:49:46 UTC |
473162b | Sebastian Schmidt | 02 December 2021, 09:49:24 UTC | Finish readme. | 02 December 2021, 09:49:24 UTC |
612d545 | Sebastian Schmidt | 02 December 2021, 09:07:57 UTC | Release 1.0.0-alpha.0 matchtigs@1.0.0-alpha.0 Generated by cargo-workspaces | 02 December 2021, 09:11:06 UTC |
cb2da27 | Sebastian Schmidt | 02 December 2021, 07:43:23 UTC | Publish code. | 02 December 2021, 08:59:25 UTC |