https://github.com/algbio/matchtigs

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Revision Author Date Message Commit Date
00ad2b4 Update README.md 09 August 2022, 10:48:53 UTC
14f925d Update README.md 09 August 2022, 10:47:13 UTC
33a37c2 Fix optimised GFA output of reverse complement. 09 August 2022, 10:27:50 UTC
3fe9418 Fix not missed nodes being reported instead of missed ones. 09 August 2022, 09:52:13 UTC
544d80b Add staged parallelism mode and Dijkstra performance tracking. 09 August 2022, 08:48:36 UTC
b2e7e30 Remove unused parameters from compute_dijkstras function. 08 August 2022, 07:56:50 UTC
c48e384 Remove superfluous output when loading graph. 08 August 2022, 06:59:59 UTC
f2367bd Update genome-graph to fix bcalm2 parsing bug. 05 August 2022, 11:38:07 UTC
c1fae12 Add special input option for bcalm2 files to parse the file faster. 04 August 2022, 12:39:13 UTC
ab61184 Release 1.2.0 matchtigs@1.2.0 Generated by cargo-workspaces 10 May 2022, 07:22:54 UTC
ff72aa3 Update readme. 10 May 2022, 07:19:42 UTC
02f10ee Add eulertigs to CLI and libs. 03 May 2022, 08:27:55 UTC
7379e1f Implement Eulertigs algorithm. (to be published soon :) ) 03 May 2022, 08:08:44 UTC
28f4f29 Update README.md. 03 May 2022, 07:49:51 UTC
d605e5a Add CI script. 03 May 2022, 07:48:08 UTC
52d616b Refactor different tig algos into separate modules. 03 May 2022, 05:59:38 UTC
a3f28ac Add test for breaking edge algorithm. 05 April 2022, 12:41:29 UTC
336aa0d Release 1.1.0 matchtigs@1.1.0 Generated by cargo-workspaces 30 March 2022, 10:07:21 UTC
1a3a21f Update dependencies. 30 March 2022, 10:03:18 UTC
52182b8 Update README. 30 March 2022, 09:56:28 UTC
284504e Use correct types for file paths. 30 March 2022, 09:53:33 UTC
7b689a3 Fix fasta output. 30 March 2022, 09:03:17 UTC
9388457 Optionally output bitvector of duplicate kmers. 30 March 2022, 08:06:28 UTC
599e76e Format. 08 March 2022, 11:19:15 UTC
c8e70ca Update dependencies. 08 March 2022, 11:17:49 UTC
a755b51 Allow to use a hashbrown::HashMap to store dijkstra node weights. 15 February 2022, 11:24:49 UTC
94afdfa Allow to choose dijkstra data structures more dynamically. 15 February 2022, 11:10:55 UTC
7fd6e42 Add possibility to exchange Dijkstra node weight array. 15 February 2022, 10:03:37 UTC
b34095c Add possibility to exchange Dijkstra heap. 15 February 2022, 09:53:09 UTC
540cae3 Update to separated omnitig and graph crates. 09 February 2022, 12:28:00 UTC
deaac97 Try out Rust's new format strings. 09 February 2022, 11:03:23 UTC
3ce0404 Add preprint citation 10 January 2022, 11:28:25 UTC
a4803a4 Release 1.0.0 matchtigs@1.0.0 Generated by cargo-workspaces 02 December 2021, 09:49:46 UTC
473162b Finish readme. 02 December 2021, 09:49:24 UTC
612d545 Release 1.0.0-alpha.0 matchtigs@1.0.0-alpha.0 Generated by cargo-workspaces 02 December 2021, 09:11:06 UTC
cb2da27 Publish code. 02 December 2021, 08:59:25 UTC
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