Revision 0122040fad865487e2377cee35360af49e37d0e8 authored by Nate Coraor on 24 February 2016, 18:23:36 UTC, committed by Nate Coraor on 24 February 2016, 18:23:36 UTC
1 parent f8a1aef
liftOver.loc.sample
#This is a sample file distributed with Galaxy that is used by the
#liftOver tools. The liftOver.loc file has this format (white space
#characters are TAB characters):
#
#<FromSpecies> <ToSpecies> <PathToChainFile>
#
#So, for example, if you had the chain file to convert from anoCar1 to galGal3
#located at /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain,
#then the liftOver.loc entry would look like this:
#
#anoCar1 galGal3 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain
#
#and your /depot/data2/galaxy/anoCar1/liftOver directory would
#contain all of your "chain" files (e.g.):
#
#-rw-rw-r-- 1 gua110 galaxy 24046079 2008-01-16 14:20 anoCar1ToGalGal3.over.chain
#-rw-rw-r-- 1 gua110 galaxy 13216668 2008-01-16 14:20 anoCar1ToGasAcu1.over.chain
#-rw-rw-r-- 1 gua110 galaxy 29597067 2008-01-16 14:20 anoCar1ToHg18.over.chain
#...etc...
#
#Your liftOver.loc file should include an entry per line for each build you can
#convert. For example:
#
#anoCar1 galGal3 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain
#anoCar1 gasAcu1 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGasAcu1.over.chain
#anoCar1 hg18 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToHg18.over.chain
#...etc...
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