Revision 03c51629b381f6c8cf659f52297d922291f51df2 authored by Jonathan Pober on 27 December 2022, 17:26:14 UTC, committed by Bryna Hazelton on 03 January 2023, 20:33:26 UTC
Added CSSI grant numbers from Brown and UW
1 parent 67c786e
setup.py
# -*- mode: python; coding: utf-8 -*-
# Copyright (c) 2018 Radio Astronomy Software Group
# Licensed under the 2-clause BSD License
import glob
import io
import os
import platform
import sys
from sysconfig import get_config_var
import numpy
from Cython.Build import cythonize
from packaging.version import parse
from setuptools import Extension, find_namespace_packages, setup
# add pyuvdata to our path in order to use the branch_scheme function
sys.path.append("pyuvdata")
from branch_scheme import branch_scheme # noqa
with io.open("README.md", "r", encoding="utf-8") as readme_file:
readme = readme_file.read()
def is_platform_mac():
return sys.platform == "darwin"
def is_platform_windows():
return sys.platform == "win32"
# For mac, ensure extensions are built for macos 10.9 when compiling on a
# 10.9 system or above, overriding distuitls behaviour which is to target
# the version that python was built for. This may be overridden by setting
# MACOSX_DEPLOYMENT_TARGET before calling setup.py
# implementation based on pandas, see https://github.com/pandas-dev/pandas/issues/23424
if is_platform_mac():
if "MACOSX_DEPLOYMENT_TARGET" not in os.environ:
current_system = parse(platform.mac_ver()[0])
python_target = parse(get_config_var("MACOSX_DEPLOYMENT_TARGET"))
if python_target < parse("10.9") and current_system >= parse("10.9"):
os.environ["MACOSX_DEPLOYMENT_TARGET"] = "10.9"
# define the cython compile args, depending on platform
if is_platform_windows():
extra_compile_args = ["/Ox", "/openmp"]
extra_link_args = ["/openmp"]
elif is_platform_mac():
extra_compile_args = ["-O3"]
extra_link_args = []
else:
extra_compile_args = ["-O3", "-fopenmp"]
extra_link_args = ["-fopenmp"]
global_c_macros = [("NPY_NO_DEPRECATED_API", "NPY_1_7_API_VERSION")]
miriad_extension = Extension(
"pyuvdata._miriad",
sources=[
"pyuvdata/uvdata/src/miriad_wrap.pyx",
"pyuvdata/uvdata/src/uvio.c",
"pyuvdata/uvdata/src/hio.c",
"pyuvdata/uvdata/src/pack.c",
"pyuvdata/uvdata/src/bug.c",
"pyuvdata/uvdata/src/dio.c",
"pyuvdata/uvdata/src/headio.c",
"pyuvdata/uvdata/src/maskio.c",
],
define_macros=global_c_macros,
include_dirs=["pyuvdata/uvdata/src/", numpy.get_include()],
)
corr_fits_extension = Extension(
"pyuvdata._corr_fits",
sources=["pyuvdata/uvdata/corr_fits.pyx"],
define_macros=global_c_macros,
include_dirs=[numpy.get_include()],
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args,
)
utils_extension = Extension(
"pyuvdata._utils",
sources=["pyuvdata/utils.pyx"],
define_macros=global_c_macros,
include_dirs=[numpy.get_include()],
extra_compile_args=extra_compile_args,
)
uvbeam_extension = Extension(
"pyuvdata._uvbeam",
sources=["pyuvdata/uvbeam/uvbeam.pyx"],
define_macros=global_c_macros,
include_dirs=[numpy.get_include()],
extra_compile_args=extra_compile_args,
)
extensions = [corr_fits_extension, utils_extension, uvbeam_extension]
# don't build miriad on windows
if not is_platform_windows():
extensions.append(miriad_extension)
astroquery_reqs = ["astroquery>=0.4.4"]
casa_reqs = ["python-casacore>=3.3.1"]
cst_reqs = ["pyyaml>=5.1"]
hdf5_compression_reqs = ["hdf5plugin>=3.1.0"]
healpix_reqs = ["astropy_healpix>=0.6"]
lunar_reqs = ["lunarsky>=0.1.2"]
novas_reqs = ["novas", "novas_de405"]
all_optional_reqs = (
astroquery_reqs
+ casa_reqs
+ cst_reqs
+ hdf5_compression_reqs
+ healpix_reqs
+ lunar_reqs
+ novas_reqs
)
test_reqs = all_optional_reqs + [
"pytest>=6.2",
"pytest-xdist",
"pytest-cases>=3.6.9",
"pytest-cov",
"cython",
"coverage",
"pre-commit",
]
doc_reqs = ["sphinx", "pypandoc"]
setup_args = {
"name": "pyuvdata",
"author": "Radio Astronomy Software Group",
"url": "https://github.com/RadioAstronomySoftwareGroup/pyuvdata",
"license": "BSD",
"description": "an interface for astronomical interferometeric datasets in python",
"long_description": readme,
"long_description_content_type": "text/markdown",
"package_dir": {"pyuvdata": "pyuvdata"},
"packages": find_namespace_packages(),
"ext_modules": cythonize(extensions, language_level=3),
"scripts": [fl for fl in glob.glob("scripts/*") if not os.path.isdir(fl)],
"use_scm_version": {"local_scheme": branch_scheme},
"include_package_data": True,
"install_requires": [
"astropy>=5.0.4",
"h5py>=3.0",
"numpy>=1.19",
"pyerfa>=2.0",
"scipy>=1.3",
"setuptools_scm!=7.0.0,!=7.0.1,!=7.0.2",
],
"extras_require": {
"astroquery": astroquery_reqs,
"casa": casa_reqs,
"cst": cst_reqs,
"hdf5_compression": hdf5_compression_reqs,
"healpix": healpix_reqs,
"lunar": lunar_reqs,
"novas": novas_reqs,
"all": all_optional_reqs,
"test": test_reqs,
"doc": doc_reqs,
"dev": test_reqs + doc_reqs,
},
"classifiers": [
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Topic :: Scientific/Engineering :: Astronomy",
],
"keywords": "radio astronomy interferometry",
}
if __name__ == "__main__":
setup(**setup_args)
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