Revision 0461d2e117ce88704a56dd8bcbf6bf7787991b15 authored by Eh Tan on 08 November 2007, 23:28 UTC, committed by Eh Tan on 08 November 2007, 23:28 UTC
svn+ssh://svn@geodynamics.org/cig/mc/3D/CitcomS/trunk

........
  r8194 | tan2 | 2007-10-30 14:49:58 -0700 (Tue, 30 Oct 2007) | 1 line
  
  Compute d(rho)/dr/rho from rho(r)
........
  r8195 | tan2 | 2007-10-30 14:50:52 -0700 (Tue, 30 Oct 2007) | 1 line
  
  Fixed a bug in dimensionalizing density. Provided the formula of geoid calculation in the comments. Rearranged the order of functions.
........
  r8196 | tan2 | 2007-10-30 14:53:50 -0700 (Tue, 30 Oct 2007) | 1 line
  
  A post-processing program to project geoid coefficents onto a regular (longitude, latitude) mesh
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  r8197 | tan2 | 2007-10-30 14:54:14 -0700 (Tue, 30 Oct 2007) | 1 line
  
  Added the C program project_geoid to the makefile
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  r8199 | tan2 | 2007-10-30 15:29:44 -0700 (Tue, 30 Oct 2007) | 1 line
  
  Minor modification
........
  r8201 | tan2 | 2007-11-01 16:33:30 -0700 (Thu, 01 Nov 2007) | 1 line
  
  Print dv/v=dp/p=1.0 for the 1st Uzawa iteraion
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  r8202 | tan2 | 2007-11-01 16:33:50 -0700 (Thu, 01 Nov 2007) | 1 line
  
  Fixed an error in comment
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  r8204 | tan2 | 2007-11-05 17:03:35 -0800 (Mon, 05 Nov 2007) | 1 line
  
  Scaled topo with variable gravity. Fixed an error in comment. Rearranged computation.
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  r8205 | tan2 | 2007-11-05 17:03:55 -0800 (Mon, 05 Nov 2007) | 1 line
  
  Removed functions related sph. harm in lib/Regional_obsolete.c
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  r8206 | tan2 | 2007-11-05 17:04:20 -0800 (Mon, 05 Nov 2007) | 1 line
  
  Shrank the size of sph. harm arrays
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  r8207 | tan2 | 2007-11-05 17:04:43 -0800 (Mon, 05 Nov 2007) | 1 line
  
  Init'd some variables about vtk_io, which might be accessed with uninit'd values in output_finalize()
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  r8212 | tan2 | 2007-11-06 15:17:54 -0800 (Tue, 06 Nov 2007) | 1 line
  
  Fixed a few memory errors
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  r8213 | tan2 | 2007-11-06 15:18:12 -0800 (Tue, 06 Nov 2007) | 1 line
  
  Increase vlowstep to match the default value in pyre
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  r8214 | tan2 | 2007-11-06 15:18:35 -0800 (Tue, 06 Nov 2007) | 1 line
  
  Removed unused multigrid parameters
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  r8215 | tan2 | 2007-11-06 15:18:54 -0800 (Tue, 06 Nov 2007) | 1 line
  
  Added cgrad solver convergence parameters, increased buoyancy_ratio and lower the # of steps
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  r8226 | tan2 | 2007-11-07 11:51:56 -0800 (Wed, 07 Nov 2007) | 1 line
  
  Print a warning when matrix eqn solver not converging
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  r8227 | tan2 | 2007-11-07 11:52:17 -0800 (Wed, 07 Nov 2007) | 1 line
  
  Removed comp_el from default output, since it is not required for restart anymore.
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  r8228 | tan2 | 2007-11-07 11:52:39 -0800 (Wed, 07 Nov 2007) | 1 line
  
  Decreased the # of processors. This is the only way I can reproduce single-cell convection as in the manual.
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  r8235 | tan2 | 2007-11-08 11:18:26 -0800 (Thu, 08 Nov 2007) | 1 line
  
  Dereased the timestep size to reduce artifacts in advection
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  r8236 | tan2 | 2007-11-08 11:18:52 -0800 (Thu, 08 Nov 2007) | 1 line
  
  Update NEWS
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  r8237 | tan2 | 2007-11-08 11:19:12 -0800 (Thu, 08 Nov 2007) | 1 line
  
  Update the version number
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  r8241 | tan2 | 2007-11-08 13:17:14 -0800 (Thu, 08 Nov 2007) | 1 line
  
  Updated file ChangeLog to r8240
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  r8242 | tan2 | 2007-11-08 13:36:55 -0800 (Thu, 08 Nov 2007) | 1 line
  
  Removed binary checkpoint files from makefile, as the file size is too big for distribution.
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  r8243 | tan2 | 2007-11-08 13:38:09 -0800 (Thu, 08 Nov 2007) | 1 line
  
  Updated file ChangeLog to r8242
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  r8244 | tan2 | 2007-11-08 14:31:21 -0800 (Thu, 08 Nov 2007) | 1 line
  
  Replaced a system call by std C library remove() and disabled another system call (backup input file). Partially fixed issue130. All remaining system calls are in lib/Output_gzdir.c.
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  r8245 | tan2 | 2007-11-08 14:41:31 -0800 (Thu, 08 Nov 2007) | 1 line
  
  Updated file ChangeLog to r8244
........

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Raw File
bindings.c
/*
//~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
//
//<LicenseText>
//
// CitcomS.py by Eh Tan, Eun-seo Choi, and Pururav Thoutireddy.
// Copyright (C) 2002-2005, California Institute of Technology.
//
// This program is free software; you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation; either version 2 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
//
//</LicenseText>
//
//~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
*/

#include <Python.h>

#include "bindings.h"

#include "advdiffu.h"
#include "initial_conditions.h"
#include "mesher.h"
#include "misc.h"
#include "outputs.h"
#include "setProperties.h"
#include "stokes_solver.h"


/* the method table */

struct PyMethodDef pyCitcom_methods[] = {

    /* dummy entry for testing */
    {pyCitcom_copyright__name__,
     pyCitcom_copyright,
     METH_VARARGS,
     pyCitcom_copyright__doc__},


    /*////////////////////////////////////////////////////////////////////////
    // This section is for testing or temporatory implementation
    ////////////////////////////////////////////////////////////////////////*/

    {pyCitcom_return1_test__name__,
     pyCitcom_return1_test,
     METH_VARARGS,
     pyCitcom_return1_test__doc__},

    {pyCitcom_CPU_time__name__,
     pyCitcom_CPU_time,
     METH_VARARGS,
     pyCitcom_CPU_time__doc__},

    {pyCitcom_read_instructions__name__,
     pyCitcom_read_instructions,
     METH_VARARGS,
     pyCitcom_read_instructions__doc__},


    /*////////////////////////////////////////////////////////////////////////
    // This section is for finished implementation
    ////////////////////////////////////////////////////////////////////////*/

    /* from misc.h */

    {pyCitcom_citcom_init__name__,
     pyCitcom_citcom_init,
     METH_VARARGS,
     pyCitcom_citcom_init__doc__},

    {pyCitcom_full_solver_init__name__,
     pyCitcom_full_solver_init,
     METH_VARARGS,
     pyCitcom_full_solver_init__doc__},

    {pyCitcom_regional_solver_init__name__,
     pyCitcom_regional_solver_init,
     METH_VARARGS,
     pyCitcom_regional_solver_init__doc__},

    {pyCitcom_global_default_values__name__,
     pyCitcom_global_default_values,
     METH_VARARGS,
     pyCitcom_global_default_values__doc__},

    {pyCitcom_set_signal__name__,
     pyCitcom_set_signal,
     METH_VARARGS,
     pyCitcom_set_signal__doc__},

    {pyCitcom_velocities_conform_bcs__name__,
     pyCitcom_velocities_conform_bcs,
     METH_VARARGS,
     pyCitcom_velocities_conform_bcs__doc__},

    {pyCitcom_BC_update_plate_velocity__name__,
     pyCitcom_BC_update_plate_velocity,
     METH_VARARGS,
     pyCitcom_BC_update_plate_velocity__doc__},

    {pyCitcom_Tracer_tracer_advection__name__,
     pyCitcom_Tracer_tracer_advection,
     METH_VARARGS,
     pyCitcom_Tracer_tracer_advection__doc__},

    {pyCitcom_Visc_update_material__name__,
     pyCitcom_Visc_update_material,
     METH_VARARGS,
     pyCitcom_Visc_update_material__doc__},

    {pyCitcom_return_dt__name__,
     pyCitcom_return_dt,
     METH_VARARGS,
     pyCitcom_return_dt__doc__},

    {pyCitcom_return_step__name__,
     pyCitcom_return_step,
     METH_VARARGS,
     pyCitcom_return_step__doc__},

    {pyCitcom_return_t__name__,
     pyCitcom_return_t,
     METH_VARARGS,
     pyCitcom_return_t__doc__},

    {pyCitcom_return_rank__name__,
     pyCitcom_return_rank,
     METH_VARARGS,
     pyCitcom_return_rank__doc__},

    {pyCitcom_return_pid__name__,
     pyCitcom_return_pid,
     METH_VARARGS,
     pyCitcom_return_pid__doc__},

    /* from advdiffu.h */

    {pyCitcom_PG_timestep_init__name__,
     pyCitcom_PG_timestep_init,
     METH_VARARGS,
     pyCitcom_PG_timestep_init__doc__},

    {pyCitcom_PG_timestep_solve__name__,
     pyCitcom_PG_timestep_solve,
     METH_VARARGS,
     pyCitcom_PG_timestep_solve__doc__},

    {pyCitcom_set_convection_defaults__name__,
     pyCitcom_set_convection_defaults,
     METH_VARARGS,
     pyCitcom_set_convection_defaults__doc__},

    {pyCitcom_stable_timestep__name__,
     pyCitcom_stable_timestep,
     METH_VARARGS,
     pyCitcom_stable_timestep__doc__},

    /* from initial_conditions.h */

    {pyCitcom_ic_initialize_material__name__,
     pyCitcom_ic_initialize_material,
     METH_VARARGS,
     pyCitcom_ic_initialize_material__doc__},

    {pyCitcom_ic_init_tracer_composition__name__,
     pyCitcom_ic_init_tracer_composition,
     METH_VARARGS,
     pyCitcom_ic_init_tracer_composition__doc__},

    {pyCitcom_ic_constructTemperature__name__,
     pyCitcom_ic_constructTemperature,
     METH_VARARGS,
     pyCitcom_ic_constructTemperature__doc__},

    {pyCitcom_ic_initPressure__name__,
     pyCitcom_ic_initPressure,
     METH_VARARGS,
     pyCitcom_ic_initPressure__doc__},

    {pyCitcom_ic_initVelocity__name__,
     pyCitcom_ic_initVelocity,
     METH_VARARGS,
     pyCitcom_ic_initVelocity__doc__},

    {pyCitcom_ic_initViscosity__name__,
     pyCitcom_ic_initViscosity,
     METH_VARARGS,
     pyCitcom_ic_initViscosity__doc__},

    {pyCitcom_ic_readCheckpoint__name__,
     pyCitcom_ic_readCheckpoint,
     METH_VARARGS,
     pyCitcom_ic_readCheckpoint__doc__},

    /* from mesher.h */

    {pyCitcom_full_sphere_launch__name__,
     pyCitcom_full_sphere_launch,
     METH_VARARGS,
     pyCitcom_full_sphere_launch__doc__},

    {pyCitcom_regional_sphere_launch__name__,
     pyCitcom_regional_sphere_launch,
     METH_VARARGS,
     pyCitcom_regional_sphere_launch__doc__},

    /* from outputs.h */

    {pyCitcom_output__name__,
     pyCitcom_output,
     METH_VARARGS,
     pyCitcom_output__doc__},

    {pyCitcom_output_finalize__name__,
     pyCitcom_output_finalize,
     METH_VARARGS,
     pyCitcom_output_finalize__doc__},

    {pyCitcom_output_time__name__,
     pyCitcom_output_time,
     METH_VARARGS,
     pyCitcom_output_time__doc__},

    {pyCitcom_output_checkpoint__name__,
     pyCitcom_output_checkpoint,
     METH_VARARGS,
     pyCitcom_output_checkpoint__doc__},

    /* from setProperties.h */

    {pyCitcom_Advection_diffusion_set_properties__name__,
     pyCitcom_Advection_diffusion_set_properties,
     METH_VARARGS,
     pyCitcom_Advection_diffusion_set_properties__doc__},

    {pyCitcom_BC_set_properties__name__,
     pyCitcom_BC_set_properties,
     METH_VARARGS,
     pyCitcom_BC_set_properties__doc__},

    {pyCitcom_Const_set_properties__name__,
     pyCitcom_Const_set_properties,
     METH_VARARGS,
     pyCitcom_Const_set_properties__doc__},

    {pyCitcom_IC_set_properties__name__,
     pyCitcom_IC_set_properties,
     METH_VARARGS,
     pyCitcom_IC_set_properties__doc__},

    {pyCitcom_Output_set_properties__name__,
     pyCitcom_Output_set_properties,
     METH_VARARGS,
     pyCitcom_Output_set_properties__doc__},

    {pyCitcom_Param_set_properties__name__,
     pyCitcom_Param_set_properties,
     METH_VARARGS,
     pyCitcom_Param_set_properties__doc__},

    {pyCitcom_Phase_set_properties__name__,
     pyCitcom_Phase_set_properties,
     METH_VARARGS,
     pyCitcom_Phase_set_properties__doc__},

    {pyCitcom_Solver_set_properties__name__,
     pyCitcom_Solver_set_properties,
     METH_VARARGS,
     pyCitcom_Solver_set_properties__doc__},

    {pyCitcom_Sphere_set_properties__name__,
     pyCitcom_Sphere_set_properties,
     METH_VARARGS,
     pyCitcom_Sphere_set_properties__doc__},

    {pyCitcom_Tracer_set_properties__name__,
     pyCitcom_Tracer_set_properties,
     METH_VARARGS,
     pyCitcom_Tracer_set_properties__doc__},

    {pyCitcom_Visc_set_properties__name__,
     pyCitcom_Visc_set_properties,
     METH_VARARGS,
     pyCitcom_Visc_set_properties__doc__},

    {pyCitcom_Incompressible_set_properties__name__,
     pyCitcom_Incompressible_set_properties,
     METH_VARARGS,
     pyCitcom_Incompressible_set_properties__doc__},

    /* from stokes_solver.h */

    {pyCitcom_assemble_forces__name__,
     pyCitcom_assemble_forces,
     METH_VARARGS,
     pyCitcom_assemble_forces__doc__},

    {pyCitcom_assemble_forces_pseudo_surf__name__,
     pyCitcom_assemble_forces_pseudo_surf,
     METH_VARARGS,
     pyCitcom_assemble_forces_pseudo_surf__doc__},

    {pyCitcom_construct_stiffness_B_matrix__name__,
     pyCitcom_construct_stiffness_B_matrix,
     METH_VARARGS,
     pyCitcom_construct_stiffness_B_matrix__doc__},

    {pyCitcom_general_stokes_solver__name__,
     pyCitcom_general_stokes_solver,
     METH_VARARGS,
     pyCitcom_general_stokes_solver__doc__},

    {pyCitcom_general_stokes_solver_setup__name__,
     pyCitcom_general_stokes_solver_setup,
     METH_VARARGS,
     pyCitcom_general_stokes_solver_setup__doc__},

    {pyCitcom_get_system_viscosity__name__,
     pyCitcom_get_system_viscosity,
     METH_VARARGS,
     pyCitcom_get_system_viscosity__doc__},

    {pyCitcom_set_cg_defaults__name__,
     pyCitcom_set_cg_defaults,
     METH_VARARGS,
     pyCitcom_set_cg_defaults__doc__},

    {pyCitcom_set_mg_defaults__name__,
     pyCitcom_set_mg_defaults,
     METH_VARARGS,
     pyCitcom_set_mg_defaults__doc__},

    {pyCitcom_set_mg_el_defaults__name__,
     pyCitcom_set_mg_el_defaults,
     METH_VARARGS,
     pyCitcom_set_mg_el_defaults__doc__},

    {pyCitcom_solve_constrained_flow_iterative__name__,
     pyCitcom_solve_constrained_flow_iterative,
     METH_VARARGS,
     pyCitcom_solve_constrained_flow_iterative__doc__},

    {pyCitcom_solve_constrained_flow_iterative_pseudo_surf__name__,
     pyCitcom_solve_constrained_flow_iterative_pseudo_surf,
     METH_VARARGS,
     pyCitcom_solve_constrained_flow_iterative_pseudo_surf__doc__},

    /* Sentinel */
    {0, 0, 0, 0}
};

/* $Id$ */

/* End of file */
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