Revision 08a4450b86ae4a10ef17718c1dfbaa1c1637dc05 authored by Chase W. Nelson on 17 September 2020, 18:22:07 UTC, committed by Chase W. Nelson on 17 September 2020, 18:22:07 UTC
1 parent e1f1df1
| File | Mode | Size |
|---|---|---|
| data | ||
| .gitattributes | -rw-r--r-- | 66 bytes |
| ORF_length.R | -rw-r--r-- | 9.0 KB |
| README.md | -rw-r--r-- | 25.6 KB |
| SARS-CoV-2_locate_genes.pl | -rwxr-xr-x | 13.0 KB |
| aligned_fasta2haplotypes.pl | -rwxr-xr-x | 10.9 KB |
| extract_fasta_by_sites.pl | -rwxr-xr-x | 8.0 KB |
| extract_seq_subset.py | -rwxr-xr-x | 2.3 KB |
| extract_seqs_by_location.py | -rwxr-xr-x | 3.8 KB |
| extract_seqs_by_timepoint.py | -rwxr-xr-x | 4.3 KB |
| extract_variable_columns_MSA.py | -rwxr-xr-x | 4.4 KB |
| extract_variable_columns_MSA_aa.py | -rwxr-xr-x | 4.4 KB |
| filter_VCF.py | -rwxr-xr-x | 10.4 KB |
| generate_random_protein.py | -rwxr-xr-x | 2.8 KB |
| generate_seqs_from_VCF.py | -rwxr-xr-x | 7.8 KB |
| riboseq_sliding_window.R | -rw-r--r-- | 8.1 KB |
| summarize_intrahost_by_site.py | -rwxr-xr-x | 26.0 KB |
| tally_epitope_coverage.py | -rwxr-xr-x | 3.1 KB |
| temporal_pi.R | -rw-r--r-- | 28.0 KB |
| translate_nt_seq_file.pl | -rwxr-xr-x | 6.1 KB |
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