https://github.com/fjruizruano/ngs-protocols
Revision 09d12f8d08a94a91a3e992a50c5791ae72070afe authored by Paquillo on 11 February 2021, 22:58:53 UTC, committed by Paquillo on 11 February 2021, 22:58:53 UTC
1 parent a948c24
Tip revision: 09d12f8d08a94a91a3e992a50c5791ae72070afe authored by Paquillo on 11 February 2021, 22:58:53 UTC
adding rm_getseq_stats.py
adding rm_getseq_stats.py
Tip revision: 09d12f8
repeat_masker_run.py
#! /usr/bin/python
from subprocess import call
library = raw_input("Introduce library name: ")
threads = raw_input("Introduce number of threads: ")
files = open("lista.txt").readlines()
for file in files:
call("RepeatMasker -par %s -nolow -no_is -engine crossmatch -lib %s %s" % (threads, library, file[:-1]) , shell=True)
Computing file changes ...
