Skip to main content

Browse the archive

https://github.com/ctlab/quant3p
25 December 2019, 16:37:49 UTC
Revision 0aa4fbf3815aba270ee902c050386e1c20ab54d0 authored by Alexey Sergushichev on 30 October 2018, 08:55:48 UTC, committed by Alexey Sergushichev on 30 October 2018, 08:55:48 UTC 
setting tag size for macs to work in stream mode
1 parent 43b3a2d
Raw File
Tip revision: 0aa4fbf3815aba270ee902c050386e1c20ab54d0 authored by Alexey Sergushichev on 30 October 2018, 08:55:48 UTC
setting tag size for macs to work in stream mode
Tip revision: 0aa4fbf
setup.py 
from setuptools import setup

setup(name='quant3p',
      version='0.1',
      description='Tools to do 3\' RNA-seq quantification',
      url='http://github.com/ctlab/quant3p',
      author='Alexey Sergushichev',
      author_email='alserg@rain.ifmo.ru',
      license='Apache2',
      packages=['quant3p'],
      install_requires=[
          'HTSeq',
          'pysam',
          'pybedtools >= 0.6.9',
          'macs2 >= 2.1.0'
          ],
      scripts=['bin/macs2-stranded', 'bin/quant3p'],
      entry_points = {
          'console_scripts': [
              'fix-mm=quant3p.fixmm:main',
              'gtf-extend=quant3p.gtfextend:main'],
          },
      zip_safe=False)
back to top