0b9c4d2 | Eh Tan | 09 December 2006, 00:26:38 UTC | Regenerated ChangeLog upto r5565 | 09 December 2006, 00:26:38 UTC |
545c4df | Sue Kientz | 09 December 2006, 00:22:28 UTC | gurnis final changes; image resize; ready for release | 09 December 2006, 00:22:28 UTC |
47bdc2d | Sue Kientz | 08 December 2006, 23:50:10 UTC | small text changes; image resize | 08 December 2006, 23:50:10 UTC |
7da60aa | Eh Tan | 08 December 2006, 23:45:26 UTC | Added "created by OpenDX" on several figure captions | 08 December 2006, 23:45:26 UTC |
03df21a | Eh Tan | 08 December 2006, 23:36:57 UTC | Updated MayaVi2 section | 08 December 2006, 23:36:57 UTC |
8f5c823 | Eh Tan | 08 December 2006, 23:30:39 UTC | Renamed the MayaVi launching script and move it to visual/ | 08 December 2006, 23:30:39 UTC |
dd70690 | Eh Tan | 08 December 2006, 23:26:02 UTC | Added executable bit to file permission | 08 December 2006, 23:26:02 UTC |
742ed51 | Luis Armendariz | 08 December 2006, 22:44:00 UTC | Add plugins for MayaVi2 to installation | 08 December 2006, 22:44:00 UTC |
92235c0 | Luis Armendariz | 08 December 2006, 22:27:26 UTC | Added README files | 08 December 2006, 22:27:26 UTC |
c60971f | Sue Kientz | 08 December 2006, 22:00:21 UTC | fixed image size, text size and other small text changes | 08 December 2006, 22:00:21 UTC |
8c92de8 | Luis Armendariz | 08 December 2006, 21:16:47 UTC | Removing reduce filter from comments, as it is currently obsolete. | 08 December 2006, 21:16:47 UTC |
4511a3d | Luis Armendariz | 08 December 2006, 21:15:17 UTC | Added MayaVi screenshot to manual, along with a couple of other fixes. | 08 December 2006, 21:15:17 UTC |
13061f6 | Luis Armendariz | 08 December 2006, 20:03:11 UTC | Last set of patches to citcoms_plugins * Display filename in mayavi pipeline * Changed glob pattern so that only HDF5 timestep files can be selected | 08 December 2006, 20:03:11 UTC |
af17846 | Luis Armendariz | 08 December 2006, 19:47:43 UTC | Forgot to rename data filters. | 08 December 2006, 19:47:43 UTC |
de6f70d | Luis Armendariz | 08 December 2006, 17:53:20 UTC | Added MayaVi2 screenshot for the manual. | 08 December 2006, 17:53:20 UTC |
75bb12b | Luis Armendariz | 08 December 2006, 17:44:47 UTC | Various patches. | 08 December 2006, 17:44:47 UTC |
b3423fa | Luis Armendariz | 08 December 2006, 17:40:08 UTC | Forking original plugins | 08 December 2006, 17:40:08 UTC |
9c83a26 | Luis Armendariz | 08 December 2006, 17:32:25 UTC | Archiving original plugins. | 08 December 2006, 17:32:25 UTC |
42b3b3e | Luis Armendariz | 08 December 2006, 17:31:25 UTC | Modify plugins directory | 08 December 2006, 17:31:25 UTC |
3c488f3 | Luis Armendariz | 08 December 2006, 17:29:46 UTC | Explain contents of each directory. | 08 December 2006, 17:29:46 UTC |
849cea5 | Leif Strand | 08 December 2006, 02:29:09 UTC | Made 'install_deps' actually do what 'configure' says it's doing (*missing* deps, not *all*). | 08 December 2006, 02:29:09 UTC |
8465d3f | Sue Kientz | 07 December 2006, 23:26:14 UTC | reinstated a few lost changes; changed caption position on fig 5.3 on request; enlarged fig 5.4; regen pdf | 07 December 2006, 23:26:14 UTC |
79a8733 | Eh Tan | 07 December 2006, 22:34:26 UTC | chapter 5 * Added MayaVi2 in the introduction * Added links to MayaVi2 installation | 07 December 2006, 22:34:26 UTC |
6e256a7 | Sue Kientz | 07 December 2006, 22:19:37 UTC | fixed image size; regen pdf | 07 December 2006, 22:19:37 UTC |
e7c2ea3 | Sue Kientz | 07 December 2006, 22:09:17 UTC | text fixes to recent additions | 07 December 2006, 22:09:17 UTC |
b7662aa | Eh Tan | 07 December 2006, 21:30:53 UTC | * Put back the HDFView sections * Added a screenshot of HDFView * Added a warning on "-O3" compiler flag | 07 December 2006, 21:30:53 UTC |
7bf8a4b | Sue Kientz | 07 December 2006, 05:03:23 UTC | text edits to appendices and bib | 07 December 2006, 05:03:23 UTC |
cf68821 | Sue Kientz | 07 December 2006, 00:12:17 UTC | small changes to chapt 6; standardized cross refference style; sstandardized code spacing | 07 December 2006, 00:12:17 UTC |
8910ace | Sue Kientz | 06 December 2006, 23:31:57 UTC | enumerating several sections of the instructions in chap 5 for clarity, and a few minor text fixes | 06 December 2006, 23:31:57 UTC |
cd4ffb9 | Sue Kientz | 06 December 2006, 20:59:49 UTC | a few text fixes in chapter 3 | 06 December 2006, 20:59:49 UTC |
bb3c41c | Sue Kientz | 06 December 2006, 20:33:12 UTC | a few text fixes, preface to end of chapt 2 | 06 December 2006, 20:33:12 UTC |
6f35a8c | Sue Kientz | 06 December 2006, 18:59:56 UTC | gurnis corrections and some other fixes | 06 December 2006, 18:59:56 UTC |
8cee12e | Luis Armendariz | 06 December 2006, 08:52:50 UTC | Temporarily removing Mayavi2 files from Makefile.am | 06 December 2006, 08:52:50 UTC |
3c51bb9 | Luis Armendariz | 06 December 2006, 08:23:54 UTC | Archive files created during Martin Weier's internship | 06 December 2006, 08:23:54 UTC |
bb9bfc7 | Luis Armendariz | 06 December 2006, 08:16:37 UTC | Reorganized structure of the Mayavi2 plugin modules | 06 December 2006, 08:16:37 UTC |
0dce83c | Luis Armendariz | 06 December 2006, 08:13:00 UTC | Simplified the file that will be be copied to user's ~/.mayavi2 directory. | 06 December 2006, 08:13:00 UTC |
845881d | Luis Armendariz | 06 December 2006, 06:55:03 UTC | Group all CitcomS options under a single menu group. | 06 December 2006, 06:55:03 UTC |
d7337ee | Luis Armendariz | 06 December 2006, 05:58:52 UTC | Quick fixes to manual. | 06 December 2006, 05:58:52 UTC |
1797b61 | Leif Strand | 06 December 2006, 01:08:58 UTC | Adding missing files to tarball ("make dist"), including the 'Mayavi2' directory, which is now installed under share/CitcomS. Also deleted 'Regionalmodule.c', which is no longer used. | 06 December 2006, 01:08:58 UTC |
57aeaf3 | Sue Kientz | 06 December 2006, 00:49:49 UTC | small changes in one image caption and in citation | 06 December 2006, 00:49:49 UTC |
f0944ca | Leif Strand | 06 December 2006, 00:42:34 UTC | Fix for eggs not being installed by "make install" when builddir == srcdir. This change also re-fixes the setup.py infinite regress in a cleaner way. | 06 December 2006, 00:42:34 UTC |
ab08284 | Luis Armendariz | 06 December 2006, 00:18:47 UTC | Added actions for ReduceFilter and ShowCapsFilter | 06 December 2006, 00:18:47 UTC |
59f42cb | Leif Strand | 05 December 2006, 23:13:27 UTC | Require final release version of Pythia. Include egg-related files in release tarball ("make dist"). | 05 December 2006, 23:13:27 UTC |
f17e43c | Sue Kientz | 05 December 2006, 20:46:57 UTC | edited text and images placement in 5.8 | 05 December 2006, 20:46:57 UTC |
770fe7c | Sue Kientz | 05 December 2006, 20:34:19 UTC | slghtly widened l. col in appendix a tables as using typewriter widened lines; fixed other formatting issues in appendices | 05 December 2006, 20:34:19 UTC |
9e69630 | Sue Kientz | 05 December 2006, 20:11:44 UTC | changing font style to typewriter small in appendix a tablesi and a few typos | 05 December 2006, 20:11:44 UTC |
8b31f43 | Sue Kientz | 05 December 2006, 19:19:02 UTC | small fixes to chap 4, text and table placement | 05 December 2006, 19:19:02 UTC |
e8ab235 | Sue Kientz | 05 December 2006, 18:04:11 UTC | making use of typewriter font and quotes consistent in appendix a | 05 December 2006, 18:04:11 UTC |
8ea8984 | Eh Tan | 05 December 2006, 07:09:01 UTC | Updated Chapter 4 | 05 December 2006, 07:09:01 UTC |
ea21745 | Eh Tan | 05 December 2006, 06:17:15 UTC | Example h5 files including all optional output | 05 December 2006, 06:17:15 UTC |
66962d1 | Eh Tan | 05 December 2006, 06:14:50 UTC | Forgot to update the makefile | 05 December 2006, 06:14:50 UTC |
35521dd | Eh Tan | 05 December 2006, 05:04:14 UTC | Removed sections about HDFView. HDFView by default displays the dataset in a 2D table, which can be very confusing when working on multidimensional dataset. "h5ls -r" is a better tool for discovering the group structure and dataset dimension. | 05 December 2006, 05:04:14 UTC |
e8a02da | Eh Tan | 05 December 2006, 04:19:42 UTC | * Renamed estimate.py to estimate_size.py * Added license text * Update for new HDF5 layout | 05 December 2006, 04:19:42 UTC |
318477c | Luis Armendariz | 05 December 2006, 00:46:40 UTC | Changed code in A.1.1 and A.1.2 to use small font with typewriter style. | 05 December 2006, 00:46:40 UTC |
ee84bec | Eh Tan | 05 December 2006, 00:40:12 UTC | Mentioned change of naming scheme for capfiles in NEWS | 05 December 2006, 00:40:12 UTC |
ad9f299 | Sue Kientz | 05 December 2006, 00:31:25 UTC | fixed quotes; added degree symbols as requested | 05 December 2006, 00:31:25 UTC |
0c3e62b | Eh Tan | 05 December 2006, 00:14:58 UTC | Finished the GMT script section | 05 December 2006, 00:14:58 UTC |
c4f1afa | Eh Tan | 04 December 2006, 23:47:57 UTC | Renamed "center" to "starting point" | 04 December 2006, 23:47:57 UTC |
90487f5 | Sue Kientz | 04 December 2006, 22:42:59 UTC | minor sentence/word form changes in 5.1 and 5.2 | 04 December 2006, 22:42:59 UTC |
b3365ac | Sue Kientz | 04 December 2006, 22:33:47 UTC | reformatted column names in c.4.9 | 04 December 2006, 22:33:47 UTC |
f4f3bca | Eh Tan | 04 December 2006, 22:19:15 UTC | Revised Chapter 5 and Appendix A * Minor revision of post-processing * Update OpenDX section for new HDF5 layout * Briefly mentioned GMT scripts (unfinished) * Described new viscosity laws * Using Greek letter eta in the viscosity equations | 04 December 2006, 22:19:15 UTC |
2457cf3 | Sue Kientz | 04 December 2006, 20:33:20 UTC | fixed more quotes, fixed table breaks, lines in table missing, other minor format problems | 04 December 2006, 20:33:20 UTC |
1daa462 | Luis Armendariz | 04 December 2006, 19:48:19 UTC | Added OpenHDF5 and OpenVTK actions for mayavi2 | 04 December 2006, 19:48:19 UTC |
a7c9af3 | Luis Armendariz | 04 December 2006, 17:24:39 UTC | Fixes to manual | 04 December 2006, 17:24:39 UTC |
d0d65c0 | Luis Armendariz | 04 December 2006, 17:24:24 UTC | Fixed typos | 04 December 2006, 17:24:24 UTC |
192f787 | Luis Armendariz | 04 December 2006, 16:54:12 UTC | Added vim modeline | 04 December 2006, 16:54:12 UTC |
02556dd | Luis Armendariz | 04 December 2006, 14:21:20 UTC | Mayavi2 UI customizations | 04 December 2006, 14:21:20 UTC |
7fcb642 | Luis Armendariz | 04 December 2006, 14:11:12 UTC | Added python module namespace for the citcoms mayavi2 plugins | 04 December 2006, 14:11:12 UTC |
586ea34 | Luis Armendariz | 04 December 2006, 13:43:01 UTC | Removed executable permissions | 04 December 2006, 13:43:01 UTC |
33b38bf | Eh Tan | 02 December 2006, 07:41:50 UTC | Update for new HDF5 layout | 02 December 2006, 07:41:50 UTC |
a822c42 | Eh Tan | 02 December 2006, 07:14:16 UTC | * Removed obsolete parameters * Added new parameters * Only one "parameter=value" per line | 02 December 2006, 07:14:16 UTC |
59540cb | Eh Tan | 02 December 2006, 06:04:50 UTC | Updated for new HDF5 layout | 02 December 2006, 06:04:50 UTC |
409e719 | Eh Tan | 02 December 2006, 06:04:05 UTC | Minor tweaks | 02 December 2006, 06:04:05 UTC |
737d6d7 | Eh Tan | 02 December 2006, 04:43:50 UTC | Moved utility functions to h5util.c | 02 December 2006, 04:43:50 UTC |
c9f5f73 | Eh Tan | 02 December 2006, 04:15:26 UTC | Fixed a bug of counting argc | 02 December 2006, 04:15:26 UTC |
95de6c6 | Eh Tan | 02 December 2006, 00:57:22 UTC | Added more rheology options, which is required for benchmarks rheol=1: visc = visc0 * exp(viscE * (viscT - T)) rheol=2: visc = visc0 * exp(-T / viscT) | 02 December 2006, 00:57:22 UTC |
9dc129b | Eh Tan | 02 December 2006, 00:38:50 UTC | Updated h5tocap.py for new layout of HDF5 files | 02 December 2006, 00:38:50 UTC |
d5da530 | Eh Tan | 02 December 2006, 00:03:01 UTC | Added a program to convert h5 file to velo files for restart | 02 December 2006, 00:03:01 UTC |
6d40d87 | Sue Kientz | 01 December 2006, 23:34:49 UTC | removed todo at 4.5.1, no issue there | 01 December 2006, 23:34:49 UTC |
6f8787c | Leif Strand | 01 December 2006, 22:00:25 UTC | Fix for infinite regress when builddir == srcdir. !@#$%* The .pth/sitedir/sys.path/PYTHONPATH aspect of eggs is really irritating. I hope setuptools becomes a part of the standard Python distro, as the Python core developers are likely to accept it uncritically and unmodified (as they are wont to do, apparently -- judging by all the other crap that is in the standard library). God willing, this will further accelerate the death of the language. | 01 December 2006, 22:00:25 UTC |
a348cee | Eh Tan | 01 December 2006, 21:56:58 UTC | Added samples of HDF5 output | 01 December 2006, 21:56:58 UTC |
99f6b02 | Leif Strand | 01 December 2006, 21:33:03 UTC | builddir != srcdir works again. The use of setup.py/distutils/setuptools forces the creation of files in srcdir. This bugs me. | 01 December 2006, 21:33:03 UTC |
72eaebe | Leif Strand | 01 December 2006, 04:40:37 UTC | The "make install" command now works again. | 01 December 2006, 04:40:37 UTC |
4602470 | Sue Kientz | 30 November 2006, 23:38:30 UTC | fixed sentence in A.1.2 last row | 30 November 2006, 23:38:30 UTC |
e83fdc3 | Eh Tan | 30 November 2006, 23:08:42 UTC | Updated Chapter 6 * sync'd the manual with the cookbook scripts * improving the resolution of cookbook5.2.eps is left until the next release Also, fixed table borders in Appendix A. | 30 November 2006, 23:08:42 UTC |
68ecca0 | Eh Tan | 30 November 2006, 22:55:21 UTC | Moved path name of restart file to "datadir_old" | 30 November 2006, 22:55:21 UTC |
7b4029c | Eh Tan | 30 November 2006, 22:53:31 UTC | Fixed issue63, Change "monitoringfrequency" comment in citcoms cookbooks | 30 November 2006, 22:53:31 UTC |
bfd0022 | Luis Armendariz | 30 November 2006, 22:21:14 UTC | Done with Chapter 4 references. | 30 November 2006, 22:21:14 UTC |
91e3d58 | Eh Tan | 30 November 2006, 21:16:44 UTC | The concept of caps is explained in section 1.7 | 30 November 2006, 21:16:44 UTC |
31ea96a | Luis Armendariz | 30 November 2006, 21:10:38 UTC | Removing obsolete program h5steps.c | 30 November 2006, 21:10:38 UTC |
1b23e41 | Eh Tan | 30 November 2006, 20:57:36 UTC | Updated Appendices | 30 November 2006, 20:57:36 UTC |
bbe34e1 | Eh Tan | 30 November 2006, 20:26:51 UTC | Updated section 3.6.1 | 30 November 2006, 20:26:51 UTC |
63b4155 | Leif Strand | 28 November 2006, 23:28:36 UTC | Fixed some bugs, some of which were introduced during the C -> C++ transition. Using a pidXXXX.cfg file as input should "work" now, although it still doesn't reproduce the original simulation, since at least one parameter is missing ('steps'). I maintain that dumping the configuration is really the job of the framework (Pyre). Unfortunately, Pyre's current capabilities in this area are buggy in the case of '.pml' files, and non-existent in the case of '.cfg' files. Note: 'nproc_surf' is now a real inventory item, instead of a fake one. It looks like it doesn't belong in the inventory at all, though. (I left it there to avoid breakage.) | 28 November 2006, 23:28:36 UTC |
08658cd | Leif Strand | 28 November 2006, 21:08:18 UTC | Checked-in a virus, a worm, a Trojan horse, and some other malware. LyX doesn't support copy & paste between applications, so this check-in may have introduced some bugs as well. | 28 November 2006, 21:08:18 UTC |
b1196e7 | Sue Kientz | 28 November 2006, 19:26:20 UTC | various edits to 3.6.1 and 3.7 | 28 November 2006, 19:26:20 UTC |
e195f6d | Leif Strand | 28 November 2006, 07:33:41 UTC | Rewrote expand_str() in order to: 1) avoid potential buffer overflow; 2) avoid the use of non-standard strndup(); 3) avoid the use of the heap altogether. (Prompted by unresolved strndup on Mac OS X.) | 28 November 2006, 07:33:41 UTC |
6da3152 | Eh Tan | 28 November 2006, 05:00:42 UTC | Clarified the comment | 28 November 2006, 05:00:42 UTC |
408a073 | Eh Tan | 28 November 2006, 04:42:18 UTC | Updated for new features | 28 November 2006, 04:42:18 UTC |
172b656 | Eh Tan | 28 November 2006, 04:41:56 UTC | Added a reference to NEWS | 28 November 2006, 04:41:56 UTC |
573d06e | Eh Tan | 28 November 2006, 03:34:23 UTC | Chapter 3 updated | 28 November 2006, 03:34:23 UTC |