0cbaa1f | Zihao Ye | 12 February 2021, 04:29:22 UTC | [Doc] Make the docstring of nn.glob more informative. (#2649) * upd * fix weight and sum * upd sortpool | 12 February 2021, 04:29:22 UTC |
9e63010 | Quan (Andy) Gan | 12 February 2021, 03:40:05 UTC | fix and lots of tests (#2650) | 12 February 2021, 03:40:05 UTC |
cf8a3fb | Zihao Ye | 10 February 2021, 16:00:39 UTC | [hotfix] Address the performance issue of topk. (#2628) * upd * fix * upd * upd * udp * upd * upd * upd * upd * upd * upd Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> | 10 February 2021, 16:00:39 UTC |
e46983f | Tianqi Zhang (张天启) | 10 February 2021, 03:21:34 UTC | [Bug Fix][Example] fix dataloader bug in gxn (#2631) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 10 February 2021, 03:21:34 UTC |
22ccf43 | Minjie Wang | 09 February 2021, 03:08:55 UTC | [Test] Tweak end2end benchmarks to be more reasonable (#2643) * change timeout to reasonable ranges * rgcn ns * fix all ns speed tests Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> | 09 February 2021, 03:08:55 UTC |
e4ff484 | Da Zheng | 09 February 2021, 01:19:18 UTC | [Distributed] Distributed METIS partition (#2576) * add convert. * fix. * add write_mag. * fix convert_partition.py * write data. * use pyarrow to read. * update write_mag.py * fix convert_partition.py. * load node/edge features when necessary. * reshuffle nodes. * write mag correctly. * fix a bug: inner nodes in a partition might be empty. * fix bugs. * add verify code. * insert reverse edges. * fix a bug. * add get node/edge data. * add instructions. * remove unnecessary argument. * update distributed preprocessing. * fix readme. * fix. * fix. * fix. * fix readme. * fix doc. * fix. * update readme * update doc. * update readme. Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal> | 09 February 2021, 01:19:18 UTC |
0aca566 | Jinjing Zhou | 08 February 2021, 09:01:35 UTC | [Regression] Fix regression tests (#2639) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update * add benchmarks * add * fix * update * remove RandomState * tmp remove * new batch * fix * fix * fix * address comment * fix warning * fix * fix * fix * fix * add multiupdate all * address comment * fix * add benchmarks * add * fix timing * fix * push * add -v * [Example] NGCF (#2564) * ngcf * ngcf * update Co-authored-by: zhjwy9343 <6593865@qq.com> * Revert "[Example] NGCF (#2564)" (#2611) This reverts commit a75e04f408c719289f478ca129784e05655d8def. * fix * change task * fix * fix * fix2 * enable tensoradapter when benchmark * minor fix * trigger ci * fix * fix * fix * fix * fix * fix * lint * fix Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: KounianhuaDu <51199171+KounianhuaDu@users.noreply.github.com> Co-authored-by: zhjwy9343 <6593865@qq.com> | 08 February 2021, 09:01:35 UTC |
117dd25 | Quan (Andy) Gan | 08 February 2021, 08:33:39 UTC | [Doc] Fix inconsistencies and GPU code (#2642) * fix inconsistencies and GPu * bug fixes * fix * trigger new tutorials | 08 February 2021, 08:33:39 UTC |
8ccb820 | Tong He | 08 February 2021, 06:43:24 UTC | [Doc] Update docs to motivate the use of set_batch_num_nodes and set_batch_num_edges (#2630) * fix doc * update docstring for transformation on batch graph * update cn guide * fix format * update rst | 08 February 2021, 06:43:24 UTC |
48d357b | xiang song(charlie.song) | 08 February 2021, 06:05:30 UTC | Fix numbers (#2641) Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal> | 08 February 2021, 06:05:30 UTC |
bc3a532 | nv-dlasalle | 08 February 2021, 05:00:43 UTC | [Sampling] Implement `dgl.to_block()` for the GPU (#2339) * Add start of to_block gpu implementation * Pull in more changes from 0.4.2 cuda_to_block * Move more code to IdArray * Refactor DeviceNodeMapMaker * Updates * get compiling * Integrate to_block * Fix ID allocation * Minor fixes * Cleanup cuda calls to use cuda_common * Reduce kernel calls * Lint cleanup * Expand documentation * Remove unused function * Rename variables for consistency * Add doxygen comments * Fix file extension * Remove raw asynccopy for deviceapi * Remove unused function * Fix block/tile configuration * Add cuda_device_common.cuh * Add basic hashtable * Migrate part of hashtable * Refactor to use external hashtable * Make functions members * Format hash table functions * Migrate duplicate filling * Move last function over * Refactor with cu file * lint c++ code * Move context check to C++ code * Use macro switch * Add missing files * Update docstring * update docs * Move atomic functions * Refactor hashtable * Fix linting * Expand docs * Fix mismatched argument names * Switch doxygen comments from using @param to \param Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 08 February 2021, 05:00:43 UTC |
ae18d7f | Tianjun Xiao | 08 February 2021, 02:42:32 UTC | [Example]Add dependencies for GNN-Film and dagnn (#2633) * add dependencies for GNN-Film and dagnn * fix * fix * fix | 08 February 2021, 02:42:32 UTC |
98ac391 | Quan (Andy) Gan | 07 February 2021, 09:55:49 UTC | [Doc] Large graph training tutorials (#2595) * large graph training tutorials * add full graph link prediction update * fix * fix * fix * addressed comments | 07 February 2021, 09:55:49 UTC |
0346b0a | Jinjing Zhou | 05 February 2021, 14:38:46 UTC | [Test] Add test for Cython and force rebuild when run setup.py (#2635) | 05 February 2021, 14:38:46 UTC |
3cf42fd | Tianqi Zhang (张天启) | 05 February 2021, 10:26:33 UTC | [Bug Fix][Example] hgp-sl: More info for running (#2634) * [Bug Fix][Example] hgp-sl: More info for running * change list to table * change dataset summary in gxn and sagpool * remove redundent Co-authored-by: Tong He <hetong007@gmail.com> | 05 February 2021, 10:26:33 UTC |
3ca52b1 | Mufei Li | 05 February 2021, 09:34:16 UTC | [Fix] Various Fix after Bug Bash (#2620) * update * Misc fix * Update | 05 February 2021, 09:34:16 UTC |
f8c9d58 | Chen Sirui | 05 February 2021, 08:52:41 UTC | [Bug] Hardgat enable gpu training (#2632) * add multihead in DotGatConv * Fix spacing issue * Add Unit test for dotgat * Modified Unit test for dotgat * Add transformer like divisor * Update dotgatconv.py * Update hgao.py * Update train.py Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com> Co-authored-by: Zihao Ye <expye@outlook.com> | 05 February 2021, 08:52:41 UTC |
23afe91 | xiang song(charlie.song) | 05 February 2021, 03:49:41 UTC | [Bug Fix] Fix several sparse optimizer bugs (#2596) * Fix pytorch TCP kvstore bug * lint * Fix * upd * Fix lint * Fix * trigger * fix Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal> | 05 February 2021, 03:49:41 UTC |
2f71bc5 | KounianhuaDu | 04 February 2021, 16:32:21 UTC | [Example] Neural Graph Collaborative Filtering (NGCF). (#2612) * ngcf * ngcf * update * ngcf * ngcf * remove data * update * data Co-authored-by: zhjwy9343 <6593865@qq.com> Co-authored-by: Zihao Ye <expye@outlook.com> | 04 February 2021, 16:32:21 UTC |
469088e | Minjie Wang | 04 February 2021, 06:40:00 UTC | [Test] Add benchmarks for end-to-end training w/ UDF message passing (#2609) * model acc test * add model speed test * [Example] NGCF (#2564) * ngcf * ngcf * update Co-authored-by: zhjwy9343 <6593865@qq.com> * Revert "[Example] NGCF (#2564)" (#2611) This reverts commit d88a9b1b2c52becb8cc7faebceca6e52c763de19. * use timer Co-authored-by: KounianhuaDu <51199171+KounianhuaDu@users.noreply.github.com> Co-authored-by: zhjwy9343 <6593865@qq.com> Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> Co-authored-by: Zihao Ye <expye@outlook.com> | 04 February 2021, 06:40:00 UTC |
94ab970 | 张恒瑞 | 04 February 2021, 03:59:41 UTC | [Bugfix] fix a typo in consis_loss function (#2616) | 04 February 2021, 03:59:41 UTC |
ff345c2 | wcyjames | 03 February 2021, 14:15:46 UTC | [Example] update PointNet and PointNet++ examples for Part Segmentation (#2547) * [Model] update PointNet example for Part Segmentation * Fixed issues with pointnet examples * update the README * Added image * Fixed README and tensorboard arguments * clean * Add timing * Update README.md * Update README.md Fixed a typo Co-authored-by: Tong He <hetong007@gmail.com> | 03 February 2021, 14:15:46 UTC |
b1840f4 | Mufei Li | 03 February 2021, 13:00:45 UTC | [Dataset] Change the Data Type of the Node Features in GINDataset/TUDataset from Float64 to Float32 (#2592) * Update * Update * Update * update Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> Co-authored-by: Tong He <hetong007@gmail.com> | 03 February 2021, 13:00:45 UTC |
d460efe | Jinjing Zhou | 03 February 2021, 11:10:07 UTC | [Test] More regression tests (#2591) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update * add benchmarks * add * fix * update * remove RandomState * tmp remove * new batch * fix * fix * fix * address comment * fix warning * fix * fix * fix * fix * add multiupdate all * address comment * fix * add benchmarks * add * fix timing * fix * push * add -v * [Example] NGCF (#2564) * ngcf * ngcf * update Co-authored-by: zhjwy9343 <6593865@qq.com> * Revert "[Example] NGCF (#2564)" (#2611) This reverts commit a75e04f408c719289f478ca129784e05655d8def. * fix * change task * fix * fix * fix2 * enable tensoradapter when benchmark * minor fix * trigger ci * fix * fix Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: KounianhuaDu <51199171+KounianhuaDu@users.noreply.github.com> Co-authored-by: zhjwy9343 <6593865@qq.com> | 03 February 2021, 11:10:07 UTC |
fb4a050 | Zihao Ye | 03 February 2021, 10:50:07 UTC | [bugfix] Solve the boundary issue in backward function of segment sum (#2610) * upd * trigger * upd | 03 February 2021, 10:50:07 UTC |
b04cf65 | S22 | 03 February 2021, 09:27:20 UTC | [Bugfix] Fix sparseadam bug in metapath2vec(pytorch) (#2607) It seems that there is a bug in Sparseadam in PyTorch, and it can be temporarily fixed by: optimizer = optim.SparseAdam(list(self.skip_gram_model.parameters()), lr=self.initial_lr) Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> | 03 February 2021, 09:27:20 UTC |
47c9380 | Quan (Andy) Gan | 02 February 2021, 08:23:54 UTC | [Performance] Fix Cython not being imported after switching to RTLD_LOCAL (#2608) * fix * ? Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> | 02 February 2021, 08:23:54 UTC |
20d4977 | Yu Sun | 02 February 2021, 07:52:43 UTC | [Feature] Add reverse edges in CitationGraphDataset (#2588) * [Feature] Add reverse edges in CitationGraphDataset * fix bug * fix bug * fix bug * Update python/dgl/data/citation_graph.py Co-authored-by: Xiangkun Hu <huxk_hit@qq.com> * fix notes * fix notes * fix bugs * solve requested changes * fix bug * fix bug Co-authored-by: Xiangkun Hu <huxk_hit@qq.com> | 02 February 2021, 07:52:43 UTC |
3a19bbc | Quan (Andy) Gan | 02 February 2021, 03:04:43 UTC | fix doc (#2604) | 02 February 2021, 03:04:43 UTC |
db57809 | Zihao Ye | 31 January 2021, 05:08:05 UTC | [hotfix] Add data type check for kernels. (#2598) * upd * upd | 31 January 2021, 05:08:05 UTC |
460bb42 | Quan (Andy) Gan | 29 January 2021, 09:46:31 UTC | fix build problems (#2594) | 29 January 2021, 09:46:31 UTC |
1f6eba9 | Quan (Andy) Gan | 29 January 2021, 01:30:19 UTC | [Bug] Heterogeneous graph convolution bugfix (#2578) * fix heterograph conv * remove test cases * fix test * fix test * fix test Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 29 January 2021, 01:30:19 UTC |
e4ddafe | Chen Sirui | 28 January 2021, 13:05:10 UTC | [NN] add multihead in DotGatConv (#2549) * add multihead in DotGatConv * Fix spacing issue * Add Unit test for dotgat * Modified Unit test for dotgat * Add transformer like divisor * Update dotgatconv.py Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com> Co-authored-by: Zihao Ye <expye@outlook.com> | 28 January 2021, 13:05:10 UTC |
4ca706e | Minjie Wang | 28 January 2021, 08:32:18 UTC | [Doc] Update doc of dgl.function (#2585) * update doc of dgl.function * small fix | 28 January 2021, 08:32:18 UTC |
6ce2dc3 | Jinjing Zhou | 28 January 2021, 07:50:05 UTC | [Test] Regression Test for update_all and apply_edges (#2568) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update * add benchmarks * add * fix * update * remove RandomState * tmp remove * new batch * fix * fix * fix * address comment * fix warning * fix * fix * fix * fix * add multiupdate all * address comment * fix Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 28 January 2021, 07:50:05 UTC |
fb3c070 | Zihao Ye | 28 January 2021, 06:53:55 UTC | Revert part of #2563 (#2584) | 28 January 2021, 06:53:55 UTC |
878acdb | Minjie Wang | 28 January 2021, 06:04:07 UTC | Revert "Refactor code for retaining formats in message-passing. (#2570)" (#2583) This reverts commit a613ad880690a8b155537117ea038a9de14111ed. | 28 January 2021, 06:04:07 UTC |
7bab136 | Zihao Ye | 28 January 2021, 03:21:58 UTC | [feature] Supporting half precision floating data type (fp16). (#2552) * add tvm as submodule * compilation is ok but calling fails * can call now * pack multiple modules, change names * upd * upd * upd * fix cmake * upd * upd * upd * upd * fix * relative path * upd * upd * upd * singleton * upd * trigger * fix * upd * count reducible * upd * upd * upd * upd * upd * upd * upd * upd * upd * only keep related files * upd * upd * upd * upd * lint * lint * lint * lint * pylint * upd * upd * compilation * fix * upd * upd * upd * upd * upd * upd * upd doc * refactor * fix * upd number Co-authored-by: Zhi Lin <linzhilynn@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-42-78.us-east-2.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-21-156.us-east-2.compute.internal> Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> | 28 January 2021, 03:21:58 UTC |
a7e941c | xiang song(charlie.song) | 27 January 2021, 16:26:49 UTC | [Feature] Add support for sparse embedding (#2451) * Add sparse embedding for dgl and update rgcn example * upd * Fix * Revert "Fix" This reverts commit 4da87cdfb8b8c3506b7fc7376cd2385ba8045c2a. * Fix * upd * upd * Fix * Add unitest and update impl * fix * Clean up rgcn example code * upd * upd * update * Fix * update score * sparse for sage * remove model sparse * upd * upd * remove global norm * revert delete model_sparse.py * update according to comments * Fix doc * upd * Fix test * upd * lint * lint * lint * upd * upd * clean up Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal> | 27 January 2021, 16:26:49 UTC |
362f72c | Minjie Wang | 27 January 2021, 13:29:48 UTC | [Test] Performance benchmarks for DGL kernels (#2582) * add initial kernel benchmarks * finished kernel benchmarks * add desc | 27 January 2021, 13:29:48 UTC |
12f6429 | Tong He | 27 January 2021, 10:49:40 UTC | remove hash_func from dataset object (#2572) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 27 January 2021, 10:49:40 UTC |
8e981db | Tianqi Zhang (张天启) | 27 January 2021, 10:14:27 UTC | [Example] Add Graph Cross Net (GXN) example for pytorch backend (#2559) * add sagpool example for pytorch backend * polish sagpool example for pytorch backend * [Example] SAGPool: use std variance * [Example] SAGPool: change to std * add sagpool example to index page * add graph property prediction tag to sagpool * [Example] add graph classification example HGP-SL * [Example] fix sagpool * fix bug * [Example] change tab to space in README of hgp-sl * remove redundant files * remote redundant network * [Example]: change link from code to doc in HGP-SL * [Example] in HGP-SL, change to meaningful name * [Example] Fix path mistake for 'hardgat' * [Bug Fix] Fix undefined var bug in LegacyTUDataset * upt * [Bug Fix] Fix cache file name bug in TUDataset * [Example] Add GXN example for pytorch backend * modify readme * add more exp result Co-authored-by: zhangtianqi <tianqizh@amazon.com> Co-authored-by: Tong He <hetong007@gmail.com> | 27 January 2021, 10:14:27 UTC |
9fc5eed | Minjie Wang | 27 January 2021, 09:24:28 UTC | [Doc] Fix docstring of aten::Sort (#2579) A small patch to #2391. | 27 January 2021, 09:24:28 UTC |
2576647 | nv-dlasalle | 27 January 2021, 07:33:34 UTC | [Performance] Improve COO to CSR, and sort columns of CSR only when necessary. (#2391) * Remove double-checking sorted * Remove sorting of CSR by default * Update unit test to use unsorted matix * delete whitespace * Expand unit tests * Replace cusparse sort * Fix row column sorting * Explicitly don't sort columns * Fix linting errors * Fix bit-width calculation * Fix sorting assertion and unit test * Fix linting * Improve CPU COO2CSR * Remove references * Rename and add documentation to edge encoding/decoding funcionts * Fix sorting keys as 64 bit * Revert cosmetic changes to unit tests * Update documentation * Update complexity documentation for coo to csr conversion * Remove COOIsSorted check in CPU implementation too | 27 January 2021, 07:33:34 UTC |
0855d25 | Tong He | 26 January 2021, 15:34:12 UTC | [NN] Support scalar edge weight for GraphConv, SAGEConv and GINConv (#2557) * add edge weight in forward * fix lint * fix * fix * address comments * add utils * add util to normalize in gcn way * fix lint * add unittest * fix lint * fix docstring * fix docstring * address comments * improve notation consistence * use preferred fn | 26 January 2021, 15:34:12 UTC |
8900450 | lt610 | 26 January 2021, 09:06:32 UTC | [Example] DAGNN (#2545) * dagnn * dagnn * Update README.md * Update README.md * fixed some details * fixed some details * Update README.md * Update README.md Co-authored-by: Mufei Li <mufeili1996@gmail.com> | 26 January 2021, 09:06:32 UTC |
c45f6eb | Jinjing Zhou | 26 January 2021, 07:30:27 UTC | [Bugfix] Fix duplicate edges in Coauthor Dataset #2553 (#2569) * fix * address comment | 26 January 2021, 07:30:27 UTC |
6c23fba | Quan (Andy) Gan | 26 January 2021, 04:46:37 UTC | [Doc][Org] move edge_softmax to functional (#2442) * move edge_softmax to functional * change examples * fixes * revert * fix * fix * remove * fix * test * add init Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 26 January 2021, 04:46:37 UTC |
a613ad8 | Zihao Ye | 25 January 2021, 08:55:16 UTC | Refactor code for retaining formats in message-passing. (#2570) | 25 January 2021, 08:55:16 UTC |
0f9056e | Zihao Ye | 25 January 2021, 08:15:22 UTC | [feature] Implement missing CUDA operators for COO format (part 1). (#2565) * upd * upd * upd * upd * fix * upd * upd Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> | 25 January 2021, 08:15:22 UTC |
25ac334 | Da Zheng | 25 January 2021, 03:18:00 UTC | [Distributed] Heterogeneous graph support (#2457) * Distributed heterograph (#3) * heterogeneous graph partition. * fix graph partition book for heterograph. * load heterograph partitions. * update DistGraphServer to support heterograph. * make DistGraph runnable for heterograph. * partition a graph and store parts with homogeneous graph structure. * update DistGraph server&client to use homogeneous graph. * shuffle node Ids based on node types. * load mag in heterograph. * fix per-node-type mapping. * balance node types. * fix for homogeneous graph * store etype for now. * fix data name. * fix a bug in example. * add profiler in rgcn. * heterogeneous RGCN. * map homogeneous node ids to hetero node ids. * fix graph partition book. * fix DistGraph. * shuffle eids. * verify eids and their mappings when loading a partition. * Id map from homogneous Ids to per-type Ids. * verify partitioned results. * add test for distributed sampler. * add mapping from per-type Ids to homogeneous Ids. * update example. * fix DistGraph. * Revert "add profiler in rgcn." This reverts commit 36daaed8b660933dac8f61a39faec3da2467d676. * add tests for homogeneous graphs. * fix a bug. * fix test. * fix for one partition. * fix for standalone training and evaluation. * small fix. * fix two bugs. * initialize projection matrix. * small fix on RGCN. * Fix rgcn performance (#17) Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal> * fix lint. * fix lint. * fix lint. * fix lint. * fix lint. * fix lint. * fix. * fix test. * fix lint. * test partitions. * remove redundant test for partitioning. * remove commented code. * fix partition. * fix tests. * fix RGCN. * fix test. * fix test. * fix test. * fix. * fix a bug. * update dmlc-core. * fix. * fix rgcn. * update readme. * add comments. Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal> Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal> * fix. * fix. * add div_int. * fix. * fix. * fix lint. * fix. * fix. * fix. * adjust. * move code. * handle heterograph. * return pytorch tensor in GPB. * remove some tests in example. * add to_block for distributed training. * use distributed to_block. * remove unnecessary function in DistGraph. * remove distributed to_block. * use pytorch tensor. * fix a bug in ntypes and etypes. * enable norm. * make the data loader compatible with the old format. * fix. * add comments. * fix a bug. * add test for heterograph. * support partition without reshuffle. * add test. * support partition without reshuffle. * fix. * add test. * fix bugs. * fix lint. * fix dataset. * fix for mxnet. * update docstring. * rename to floor_div * avoid exposing NodePartitionPolicy and EdgePartitionPolicy. * fix docstring. * fix error. * fixes. * fix comments. * rename. * rename. * explain IdMap. * fix docstring. * fix docstring. * update docstring. * remove the code of returning heterograph. * remove argument. * fix example. * make GraphPartitionBook an abstract class. * fix. * fix. * fix a bug. * fix a bug in example * fix a bug * reverse heterograph sampling. * temp fix. * fix lint. * Revert "temp fix." This reverts commit c450717b9f578b8c48769c675f2a19d6c1e64381. * compute norm. * Revert "reverse heterograph sampling." This reverts commit bd6deb7f52998de76508f800441ff518e2fadcb9. * fix. * move id_map.py * remove check * add more comments. * update docstring. Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal> Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal> | 25 January 2021, 03:18:00 UTC |
aa884d4 | Zihao Ye | 24 January 2021, 16:18:57 UTC | [doc][fix] Improve the docstring and fix its behavior in DGL's kernel (#2563) * upd * fix * lint * fix * upd | 24 January 2021, 16:18:57 UTC |
a6abffe | nv-dlasalle | 24 January 2021, 12:59:24 UTC | [Fix] Don't create extra formats in dataloader (#2551) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 24 January 2021, 12:59:24 UTC |
2288098 | Quan (Andy) Gan | 24 January 2021, 04:44:54 UTC | [Feature] Converting a block to a graph and allow block construction (#2555) * first commit * more commit * fix and docstring * add to api reference * address comments * Update convert.py | 24 January 2021, 04:44:54 UTC |
7ff2662 | Mufei Li | 21 January 2021, 07:12:05 UTC | [Fix] Better Error Message for node_type_subgraph (#2554) * Update * Update * Update | 21 January 2021, 07:12:05 UTC |
9d90faf | nv-dlasalle | 21 January 2021, 03:12:30 UTC | Use ALG2 for SpMM in cuSparse (#2550) | 21 January 2021, 03:12:30 UTC |
2c6d071 | xnouhz | 20 January 2021, 17:33:30 UTC | [Feature] QM9 Dataset Support (#2521) * [Model] MixHop for Node Classification task * [docs] update * [docs] update * [fix] remove seed option * [fix] update readme * [feature] support qm9 dataset * [style] update * [docs] fix the details * [fix] indexing only support int * [style] update * [fix] multiple backends support * [docs] add qm9 * [fix] Z type: float32 -> int32 * [fix] Z type: int32 -> long * [docs] add ref * [docs] fix * [docs] update * [docs] update * [fix] test eval * [docs] fix example Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal> Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> | 20 January 2021, 17:33:30 UTC |
0c15657 | Jinjing Zhou | 20 January 2021, 12:02:54 UTC | [Test] API benchmarks (#2542) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update * add benchmarks * add * fix * update * remove RandomState * tmp remove * new batch * fix * fix * fix * address comment * fix warning * fix Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 20 January 2021, 12:02:54 UTC |
8a2b54d | Josh Carty | 20 January 2021, 07:35:32 UTC | Add a TensorFlow example for SGC (#2480) This is a TensorFlow implementation of Simple Graph Convolution. For simplicity, we use the implementation of AdamW in TensorFlow Addons that differs from Adam in PyTorch. This results in worse performance on the evaluation datasets. Co-authored-by: Josh Carty <joshuac@spotify.com> Co-authored-by: Zihao Ye <expye@outlook.com> | 20 January 2021, 07:35:32 UTC |
917a755 | Jinjing Zhou | 19 January 2021, 11:35:43 UTC | [Fix] fix version check (#2544) | 19 January 2021, 11:35:43 UTC |
9a9a06e | 张天启 | 19 January 2021, 05:58:01 UTC | [Bug Fix] Fix undefined var bug in LegacyTUDataset (#2543) * [Bug Fix] Fix undefined var bug in LegacyTUDataset * upt * [Bug Fix] Fix cache file name bug in TUDataset Co-authored-by: Tong He <hetong007@gmail.com> | 19 January 2021, 05:58:01 UTC |
b36b6c2 | 张天启 | 18 January 2021, 09:01:52 UTC | [Example] Add HGP-SL example for pytorch backend (#2515) * add sagpool example for pytorch backend * polish sagpool example for pytorch backend * [Example] SAGPool: use std variance * [Example] SAGPool: change to std * add sagpool example to index page * add graph property prediction tag to sagpool * [Example] add graph classification example HGP-SL * [Example] fix sagpool * fix bug * [Example] change tab to space in README of hgp-sl * remove redundant files * remote redundant network * [Example]: change link from code to doc in HGP-SL * [Example] in HGP-SL, change to meaningful name * [Example] Fix path mistake for 'hardgat' Co-authored-by: zhangtianqi <tianqizh@amazon.com> | 18 January 2021, 09:01:52 UTC |
1caf01d | Minjie Wang | 18 January 2021, 06:28:22 UTC | Add one paper | 18 January 2021, 06:28:22 UTC |
6b46382 | Minjie Wang | 18 January 2021, 06:01:54 UTC | Update README.md | 18 January 2021, 06:01:54 UTC |
8c8c5b1 | Andrew | 17 January 2021, 02:32:47 UTC | [Bug fix] Stop erasing schemas of frames with no data rows (#2529) * added option for batching empty data, fixes #2526 * added option for batching empty data, fixes #2526 * decreased line lengths * removed trailing whitespace * fixed wrong feature name * [Bugfix] stop erasing schema of frames w/ no cols (fixes #2528) * removed arg doc Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 17 January 2021, 02:32:47 UTC |
673cc64 | Chen Sirui | 15 January 2021, 08:58:19 UTC | [Example] Add hardGAT example (#2486) * Add hgat example * Add experiment * Clean code * clear the code * Add index in README * Add index in README * Add index in README * Add index in README * Add index in README * Add index in README * Change the code title and folder name * Ready to merge * Prepare for rebase and change message passing function * use git ignore to handle empty file * change file permission to resolve empty file * Change permission * change file mode Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com> Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com> | 15 January 2021, 08:58:19 UTC |
121ee7c | Mufei Li | 15 January 2021, 08:10:37 UTC | Update PULL_REQUEST_TEMPLATE.md (#2541) | 15 January 2021, 08:10:37 UTC |
5da3439 | Mufei Li | 14 January 2021, 23:39:26 UTC | [Feature] Add Device Flag in Data Loaders (#2450) * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 14 January 2021, 23:39:26 UTC |
b1fb3c1 | Minjie Wang | 14 January 2021, 09:19:13 UTC | Update example README.md | 14 January 2021, 09:19:13 UTC |
0ab9167 | Andrew | 14 January 2021, 09:09:00 UTC | Update CONTRIBUTORS.md (#2538) | 14 January 2021, 09:09:00 UTC |
c29daae | Jinjing Zhou | 14 January 2021, 07:53:28 UTC | Add API benchmarks (#2522) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update * add benchmarks * add * fix * update * remove RandomState * tmp remove Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 14 January 2021, 07:53:28 UTC |
0778766 | Andrew | 14 January 2021, 07:25:13 UTC | [Bug fix] [Feature] added option for batching empty data (#2527) * added option for batching empty data, fixes #2526 * added option for batching empty data, fixes #2526 * decreased line lengths * removed trailing whitespace * fixed wrong feature name * now default behavior when all graphs are empty Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 14 January 2021, 07:25:13 UTC |
4d89b54 | Quan (Andy) Gan | 14 January 2021, 07:00:49 UTC | [Bug] Fix munmap() using wrong parameter (#2519) * fix munmap() using wrong parameter * rename variables Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 14 January 2021, 07:00:49 UTC |
a6ec848 | Mufei Li | 14 January 2021, 06:26:02 UTC | [Doc] Update FAQ (#2536) | 14 January 2021, 06:26:02 UTC |
1db7588 | Da Zheng | 14 January 2021, 06:23:36 UTC | fix. (#2534) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 14 January 2021, 06:23:36 UTC |
bedccc2 | Tong He | 14 January 2021, 05:40:25 UTC | fix 2532 (#2533) | 14 January 2021, 05:40:25 UTC |
a9e16c1 | KounianhuaDu | 13 January 2021, 14:34:14 UTC | [Example] GNN-FiLM (#2476) * gnnfilm * update * readme Co-authored-by: zhjwy9343 <6593865@qq.com> | 13 January 2021, 14:34:14 UTC |
c448e61 | zhjwy9343 | 13 January 2021, 11:28:20 UTC | [Doc] CN User Guide Chapter 7 (#2481) * [Doc] Add Chapter 7 * [Doc] Add CN part 7, 7.1, 7.2, and 7.3 * [Doc] Add CN part 7, 7.1, 7.2, and 7.3 * [Doc] 1st round copyediting, 7, 7.1, 7.2, and 7.3, removing EN parts. * [Doc] 2nd round copyediting. * [Doc] 3rd round copyediting. * [Doc] Copyedit with reviewers' comments. Co-authored-by: Mufei Li <mufeili1996@gmail.com> | 13 January 2021, 11:28:20 UTC |
31f65f0 | zhjwy9343 | 13 January 2021, 09:12:33 UTC | [Doc] user guide CN chapter 6 (#2452) * [Doc] Add 1st CN in chapter 6 * [Doc] Add 1st CN in chapter 6 * [Doc] Add 1st CN in chapter 6.1 * [Doc] Add 1st CN in chapter 6.1 * [Doc] Add 1st CN in chapter 6.2 * [Doc] Add CN in chapter 6.2 * [Doc] Add CN in chapter 6.3 * [Doc] Fix a code bug in chapter 6.3 * [Doc] Add CN in chapter 6.4, 6.5, and 6.6. * [Doc] Add CN in chapter 6.4, 6.5, and 6.6,then remove EN parts. * [Doc] revised 6.4, 6.5, and 6.6. * [Doc] 2nd round of copyediting. * Delete syn1.bin Remove this unrelated file to this branch * [Doc] Update guide_cn index.rst. * [Doc] Update guide_cn index.rst. * [Doc] Update guide_cn index.rst. * [Doc] Update guide_cn index.rst. * [Doc] Add chapter 7 in index page * [Doc] edit chapter 6 in PR * [Doc] edit chapter 6 in PR * [Doc] Copyediting with Murphy and Minjie's comments. * [Doc] Fix doc line in the previous chapters. Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 13 January 2021, 09:12:33 UTC |
54f186b | xiang song(charlie.song) | 13 January 2021, 07:09:21 UTC | Fix (#2524) Co-authored-by: Ubuntu <ubuntu@ip-172-31-59-204.ec2.internal> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 13 January 2021, 07:09:21 UTC |
80fdcfd | 张恒瑞 | 13 January 2021, 06:06:47 UTC | [Example] Graph Random Neural Network (#2502) * Add Implementation of GRAND * Performance updated * Update README.md add indexing entries * add indexing entries for grand * change grand from 2021 to 2020 * [Example] fix some bugs * [Examples] fix bug Co-authored-by: 张恒瑞 <hengrui@macbook.local> Co-authored-by: 张恒瑞 <hengrui@192.168.124.35> Co-authored-by: zhjwy9343 <6593865@qq.com> | 13 January 2021, 06:06:47 UTC |
1502c56 | Hongyu Cai | 13 January 2021, 04:34:47 UTC | [Doc] Fix typo of datasets (#2517) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> | 13 January 2021, 04:34:47 UTC |
1e69bf5 | Mufei Li | 12 January 2021, 19:33:38 UTC | [Paper List] Add Three Papers (#2525) * Update README.md * Update README.md * Update README.md | 12 January 2021, 19:33:38 UTC |
498505b | Quan (Andy) Gan | 12 January 2021, 09:55:58 UTC | [Doc] fix docserver build for tutorials (#2518) * fix doc build * hide GPU code | 12 January 2021, 09:55:58 UTC |
5d4995e | Hongyu Cai | 12 January 2021, 05:14:10 UTC | Update README.md (#2510) fix typo Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> | 12 January 2021, 05:14:10 UTC |
9fb3763 | Quan (Andy) Gan | 12 January 2021, 01:53:19 UTC | fix (#2516) | 12 January 2021, 01:53:19 UTC |
7128399 | Jinjing Zhou | 11 January 2021, 08:01:51 UTC | Integrate Regression Test with Jenkins (#2448) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update | 11 January 2021, 08:01:51 UTC |
4e7a646 | Tong He | 11 January 2021, 07:18:27 UTC | add one paper (#2513) | 11 January 2021, 07:18:27 UTC |
4807862 | Xiangkun Hu | 11 January 2021, 06:30:30 UTC | [Doc] Add two papers to Awesome papers list (#2511) * PPIDataset * Revert "PPIDataset" This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a. * data pipeline user guide * remove chapter numbers * Update data.rst * image in dataset userguide * update links using ref * modify the link of save_graphs and load_graphs in dataset user guide * move image to s3 server. * fix links and ref * Hide implementations that may cause confusions to the user * add papers * fix number of classes in Amazon Cobuy datasets * add two papers to Awesome paper list * Update README.md | 11 January 2021, 06:30:30 UTC |
a9f8f25 | Tong He | 11 January 2021, 05:11:19 UTC | [Doc] Update GraphDataLoader in our docs (#2504) * update graphdataloader in docs * fix * update examples * fix sagpool Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> | 11 January 2021, 05:11:19 UTC |
e018939 | Quan (Andy) Gan | 10 January 2021, 14:24:21 UTC | [Tutorial] New tutorials for small graphs (#2482) * new tutorials for small graphs * address changes and use GraphDataLoader * fix and add data * fix load_data * style fixes * Update 5_graph_classification.py | 10 January 2021, 14:24:21 UTC |
16169f3 | xiang song(charlie.song) | 09 January 2021, 16:03:45 UTC | [Test] Regression speed test for rgcn with neighbor sampling (#2461) * Add sage neighbor sample test for reddit * Add ogbn-products dataset * upd * upd * Add ogbn-mag * rgcn heterogeneous performance test * upd * update * upd * upd * use dgl dataloader * upd * Update with new collator Co-authored-by: Ubuntu <ubuntu@ip-172-31-59-204.ec2.internal> | 09 January 2021, 16:03:45 UTC |
400687d | Pein | 08 January 2021, 09:05:33 UTC | add venue label filename; delete redundant code (#2491) Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> | 08 January 2021, 09:05:33 UTC |
bdb88df | Quan (Andy) Gan | 08 January 2021, 06:30:52 UTC | [Performance] Allow DataLoaders to return indices of the seed array (#2495) * return indices from dataloader * fixes * fix * fix distgraph and added some todos * Update dataloader.py * Update dataloader.py Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com> | 08 January 2021, 06:30:52 UTC |
7994069 | Quan (Andy) Gan | 07 January 2021, 12:14:45 UTC | [Examples][Bug] fix a silly typo in JTNN (#2505) | 07 January 2021, 12:14:45 UTC |
e2e524d | Tong He | 07 January 2021, 05:38:21 UTC | [Feature] Add GraphDataLoader implementation (#2496) * add graph dataloader * add to doc * fix * fix * fix docstring * update according to torch default_collate * add unittest * fix * fix lint * fix | 07 January 2021, 05:38:21 UTC |
fa5f4d6 | Zihao Ye | 06 January 2021, 13:45:04 UTC | [Doc] Hotfix on docstring of set_batch_num_edges (#2498) | 06 January 2021, 13:45:04 UTC |
2caac08 | Quan (Andy) Gan | 06 January 2021, 09:18:37 UTC | [Bug] send_and_recv and pull may write to wrong places (#2497) * fix * fix test | 06 January 2021, 09:18:37 UTC |
4507beb | Quan (Andy) Gan | 06 January 2021, 06:27:51 UTC | add compute_loss example in link prediction user guide (#2487) | 06 January 2021, 06:27:51 UTC |
0c2a2ea | Mufei Li | 05 January 2021, 14:22:03 UTC | [Bugfix] Handle a Corner Case of Batching after Removing Nodes/Edges (#2465) * Update * Update * Update Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> | 05 January 2021, 14:22:03 UTC |