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Revision Author Date Message Commit Date
0cbaa1f [Doc] Make the docstring of nn.glob more informative. (#2649) * upd * fix weight and sum * upd sortpool 12 February 2021, 04:29:22 UTC
9e63010 fix and lots of tests (#2650) 12 February 2021, 03:40:05 UTC
cf8a3fb [hotfix] Address the performance issue of topk. (#2628) * upd * fix * upd * upd * udp * upd * upd * upd * upd * upd * upd Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> 10 February 2021, 16:00:39 UTC
e46983f [Bug Fix][Example] fix dataloader bug in gxn (#2631) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 10 February 2021, 03:21:34 UTC
22ccf43 [Test] Tweak end2end benchmarks to be more reasonable (#2643) * change timeout to reasonable ranges * rgcn ns * fix all ns speed tests Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> 09 February 2021, 03:08:55 UTC
e4ff484 [Distributed] Distributed METIS partition (#2576) * add convert. * fix. * add write_mag. * fix convert_partition.py * write data. * use pyarrow to read. * update write_mag.py * fix convert_partition.py. * load node/edge features when necessary. * reshuffle nodes. * write mag correctly. * fix a bug: inner nodes in a partition might be empty. * fix bugs. * add verify code. * insert reverse edges. * fix a bug. * add get node/edge data. * add instructions. * remove unnecessary argument. * update distributed preprocessing. * fix readme. * fix. * fix. * fix. * fix readme. * fix doc. * fix. * update readme * update doc. * update readme. Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal> 09 February 2021, 01:19:18 UTC
0aca566 [Regression] Fix regression tests (#2639) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update * add benchmarks * add * fix * update * remove RandomState * tmp remove * new batch * fix * fix * fix * address comment * fix warning * fix * fix * fix * fix * add multiupdate all * address comment * fix * add benchmarks * add * fix timing * fix * push * add -v * [Example] NGCF (#2564) * ngcf * ngcf * update Co-authored-by: zhjwy9343 <6593865@qq.com> * Revert "[Example] NGCF (#2564)" (#2611) This reverts commit a75e04f408c719289f478ca129784e05655d8def. * fix * change task * fix * fix * fix2 * enable tensoradapter when benchmark * minor fix * trigger ci * fix * fix * fix * fix * fix * fix * lint * fix Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: KounianhuaDu <51199171+KounianhuaDu@users.noreply.github.com> Co-authored-by: zhjwy9343 <6593865@qq.com> 08 February 2021, 09:01:35 UTC
117dd25 [Doc] Fix inconsistencies and GPU code (#2642) * fix inconsistencies and GPu * bug fixes * fix * trigger new tutorials 08 February 2021, 08:33:39 UTC
8ccb820 [Doc] Update docs to motivate the use of set_batch_num_nodes and set_batch_num_edges (#2630) * fix doc * update docstring for transformation on batch graph * update cn guide * fix format * update rst 08 February 2021, 06:43:24 UTC
48d357b Fix numbers (#2641) Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal> 08 February 2021, 06:05:30 UTC
bc3a532 [Sampling] Implement `dgl.to_block()` for the GPU (#2339) * Add start of to_block gpu implementation * Pull in more changes from 0.4.2 cuda_to_block * Move more code to IdArray * Refactor DeviceNodeMapMaker * Updates * get compiling * Integrate to_block * Fix ID allocation * Minor fixes * Cleanup cuda calls to use cuda_common * Reduce kernel calls * Lint cleanup * Expand documentation * Remove unused function * Rename variables for consistency * Add doxygen comments * Fix file extension * Remove raw asynccopy for deviceapi * Remove unused function * Fix block/tile configuration * Add cuda_device_common.cuh * Add basic hashtable * Migrate part of hashtable * Refactor to use external hashtable * Make functions members * Format hash table functions * Migrate duplicate filling * Move last function over * Refactor with cu file * lint c++ code * Move context check to C++ code * Use macro switch * Add missing files * Update docstring * update docs * Move atomic functions * Refactor hashtable * Fix linting * Expand docs * Fix mismatched argument names * Switch doxygen comments from using @param to \param Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 08 February 2021, 05:00:43 UTC
ae18d7f [Example]Add dependencies for GNN-Film and dagnn (#2633) * add dependencies for GNN-Film and dagnn * fix * fix * fix 08 February 2021, 02:42:32 UTC
98ac391 [Doc] Large graph training tutorials (#2595) * large graph training tutorials * add full graph link prediction update * fix * fix * fix * addressed comments 07 February 2021, 09:55:49 UTC
0346b0a [Test] Add test for Cython and force rebuild when run setup.py (#2635) 05 February 2021, 14:38:46 UTC
3cf42fd [Bug Fix][Example] hgp-sl: More info for running (#2634) * [Bug Fix][Example] hgp-sl: More info for running * change list to table * change dataset summary in gxn and sagpool * remove redundent Co-authored-by: Tong He <hetong007@gmail.com> 05 February 2021, 10:26:33 UTC
3ca52b1 [Fix] Various Fix after Bug Bash (#2620) * update * Misc fix * Update 05 February 2021, 09:34:16 UTC
f8c9d58 [Bug] Hardgat enable gpu training (#2632) * add multihead in DotGatConv * Fix spacing issue * Add Unit test for dotgat * Modified Unit test for dotgat * Add transformer like divisor * Update dotgatconv.py * Update hgao.py * Update train.py Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com> Co-authored-by: Zihao Ye <expye@outlook.com> 05 February 2021, 08:52:41 UTC
23afe91 [Bug Fix] Fix several sparse optimizer bugs (#2596) * Fix pytorch TCP kvstore bug * lint * Fix * upd * Fix lint * Fix * trigger * fix Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal> 05 February 2021, 03:49:41 UTC
2f71bc5 [Example] Neural Graph Collaborative Filtering (NGCF). (#2612) * ngcf * ngcf * update * ngcf * ngcf * remove data * update * data Co-authored-by: zhjwy9343 <6593865@qq.com> Co-authored-by: Zihao Ye <expye@outlook.com> 04 February 2021, 16:32:21 UTC
469088e [Test] Add benchmarks for end-to-end training w/ UDF message passing (#2609) * model acc test * add model speed test * [Example] NGCF (#2564) * ngcf * ngcf * update Co-authored-by: zhjwy9343 <6593865@qq.com> * Revert "[Example] NGCF (#2564)" (#2611) This reverts commit d88a9b1b2c52becb8cc7faebceca6e52c763de19. * use timer Co-authored-by: KounianhuaDu <51199171+KounianhuaDu@users.noreply.github.com> Co-authored-by: zhjwy9343 <6593865@qq.com> Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> Co-authored-by: Zihao Ye <expye@outlook.com> 04 February 2021, 06:40:00 UTC
94ab970 [Bugfix] fix a typo in consis_loss function (#2616) 04 February 2021, 03:59:41 UTC
ff345c2 [Example] update PointNet and PointNet++ examples for Part Segmentation (#2547) * [Model] update PointNet example for Part Segmentation * Fixed issues with pointnet examples * update the README * Added image * Fixed README and tensorboard arguments * clean * Add timing * Update README.md * Update README.md Fixed a typo Co-authored-by: Tong He <hetong007@gmail.com> 03 February 2021, 14:15:46 UTC
b1840f4 [Dataset] Change the Data Type of the Node Features in GINDataset/TUDataset from Float64 to Float32 (#2592) * Update * Update * Update * update Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> Co-authored-by: Tong He <hetong007@gmail.com> 03 February 2021, 13:00:45 UTC
d460efe [Test] More regression tests (#2591) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update * add benchmarks * add * fix * update * remove RandomState * tmp remove * new batch * fix * fix * fix * address comment * fix warning * fix * fix * fix * fix * add multiupdate all * address comment * fix * add benchmarks * add * fix timing * fix * push * add -v * [Example] NGCF (#2564) * ngcf * ngcf * update Co-authored-by: zhjwy9343 <6593865@qq.com> * Revert "[Example] NGCF (#2564)" (#2611) This reverts commit a75e04f408c719289f478ca129784e05655d8def. * fix * change task * fix * fix * fix2 * enable tensoradapter when benchmark * minor fix * trigger ci * fix * fix Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: KounianhuaDu <51199171+KounianhuaDu@users.noreply.github.com> Co-authored-by: zhjwy9343 <6593865@qq.com> 03 February 2021, 11:10:07 UTC
fb4a050 [bugfix] Solve the boundary issue in backward function of segment sum (#2610) * upd * trigger * upd 03 February 2021, 10:50:07 UTC
b04cf65 [Bugfix] Fix sparseadam bug in metapath2vec(pytorch) (#2607) It seems that there is a bug in Sparseadam in PyTorch, and it can be temporarily fixed by: optimizer = optim.SparseAdam(list(self.skip_gram_model.parameters()), lr=self.initial_lr) Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> 03 February 2021, 09:27:20 UTC
47c9380 [Performance] Fix Cython not being imported after switching to RTLD_LOCAL (#2608) * fix * ? Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> 02 February 2021, 08:23:54 UTC
20d4977 [Feature] Add reverse edges in CitationGraphDataset (#2588) * [Feature] Add reverse edges in CitationGraphDataset * fix bug * fix bug * fix bug * Update python/dgl/data/citation_graph.py Co-authored-by: Xiangkun Hu <huxk_hit@qq.com> * fix notes * fix notes * fix bugs * solve requested changes * fix bug * fix bug Co-authored-by: Xiangkun Hu <huxk_hit@qq.com> 02 February 2021, 07:52:43 UTC
3a19bbc fix doc (#2604) 02 February 2021, 03:04:43 UTC
db57809 [hotfix] Add data type check for kernels. (#2598) * upd * upd 31 January 2021, 05:08:05 UTC
460bb42 fix build problems (#2594) 29 January 2021, 09:46:31 UTC
1f6eba9 [Bug] Heterogeneous graph convolution bugfix (#2578) * fix heterograph conv * remove test cases * fix test * fix test * fix test Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 29 January 2021, 01:30:19 UTC
e4ddafe [NN] add multihead in DotGatConv (#2549) * add multihead in DotGatConv * Fix spacing issue * Add Unit test for dotgat * Modified Unit test for dotgat * Add transformer like divisor * Update dotgatconv.py Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com> Co-authored-by: Zihao Ye <expye@outlook.com> 28 January 2021, 13:05:10 UTC
4ca706e [Doc] Update doc of dgl.function (#2585) * update doc of dgl.function * small fix 28 January 2021, 08:32:18 UTC
6ce2dc3 [Test] Regression Test for update_all and apply_edges (#2568) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update * add benchmarks * add * fix * update * remove RandomState * tmp remove * new batch * fix * fix * fix * address comment * fix warning * fix * fix * fix * fix * add multiupdate all * address comment * fix Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 28 January 2021, 07:50:05 UTC
fb3c070 Revert part of #2563 (#2584) 28 January 2021, 06:53:55 UTC
878acdb Revert "Refactor code for retaining formats in message-passing. (#2570)" (#2583) This reverts commit a613ad880690a8b155537117ea038a9de14111ed. 28 January 2021, 06:04:07 UTC
7bab136 [feature] Supporting half precision floating data type (fp16). (#2552) * add tvm as submodule * compilation is ok but calling fails * can call now * pack multiple modules, change names * upd * upd * upd * fix cmake * upd * upd * upd * upd * fix * relative path * upd * upd * upd * singleton * upd * trigger * fix * upd * count reducible * upd * upd * upd * upd * upd * upd * upd * upd * upd * only keep related files * upd * upd * upd * upd * lint * lint * lint * lint * pylint * upd * upd * compilation * fix * upd * upd * upd * upd * upd * upd * upd doc * refactor * fix * upd number Co-authored-by: Zhi Lin <linzhilynn@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-42-78.us-east-2.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-21-156.us-east-2.compute.internal> Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> 28 January 2021, 03:21:58 UTC
a7e941c [Feature] Add support for sparse embedding (#2451) * Add sparse embedding for dgl and update rgcn example * upd * Fix * Revert "Fix" This reverts commit 4da87cdfb8b8c3506b7fc7376cd2385ba8045c2a. * Fix * upd * upd * Fix * Add unitest and update impl * fix * Clean up rgcn example code * upd * upd * update * Fix * update score * sparse for sage * remove model sparse * upd * upd * remove global norm * revert delete model_sparse.py * update according to comments * Fix doc * upd * Fix test * upd * lint * lint * lint * upd * upd * clean up Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal> 27 January 2021, 16:26:49 UTC
362f72c [Test] Performance benchmarks for DGL kernels (#2582) * add initial kernel benchmarks * finished kernel benchmarks * add desc 27 January 2021, 13:29:48 UTC
12f6429 remove hash_func from dataset object (#2572) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 27 January 2021, 10:49:40 UTC
8e981db [Example] Add Graph Cross Net (GXN) example for pytorch backend (#2559) * add sagpool example for pytorch backend * polish sagpool example for pytorch backend * [Example] SAGPool: use std variance * [Example] SAGPool: change to std * add sagpool example to index page * add graph property prediction tag to sagpool * [Example] add graph classification example HGP-SL * [Example] fix sagpool * fix bug * [Example] change tab to space in README of hgp-sl * remove redundant files * remote redundant network * [Example]: change link from code to doc in HGP-SL * [Example] in HGP-SL, change to meaningful name * [Example] Fix path mistake for 'hardgat' * [Bug Fix] Fix undefined var bug in LegacyTUDataset * upt * [Bug Fix] Fix cache file name bug in TUDataset * [Example] Add GXN example for pytorch backend * modify readme * add more exp result Co-authored-by: zhangtianqi <tianqizh@amazon.com> Co-authored-by: Tong He <hetong007@gmail.com> 27 January 2021, 10:14:27 UTC
9fc5eed [Doc] Fix docstring of aten::Sort (#2579) A small patch to #2391. 27 January 2021, 09:24:28 UTC
2576647 [Performance] Improve COO to CSR, and sort columns of CSR only when necessary. (#2391) * Remove double-checking sorted * Remove sorting of CSR by default * Update unit test to use unsorted matix * delete whitespace * Expand unit tests * Replace cusparse sort * Fix row column sorting * Explicitly don't sort columns * Fix linting errors * Fix bit-width calculation * Fix sorting assertion and unit test * Fix linting * Improve CPU COO2CSR * Remove references * Rename and add documentation to edge encoding/decoding funcionts * Fix sorting keys as 64 bit * Revert cosmetic changes to unit tests * Update documentation * Update complexity documentation for coo to csr conversion * Remove COOIsSorted check in CPU implementation too 27 January 2021, 07:33:34 UTC
0855d25 [NN] Support scalar edge weight for GraphConv, SAGEConv and GINConv (#2557) * add edge weight in forward * fix lint * fix * fix * address comments * add utils * add util to normalize in gcn way * fix lint * add unittest * fix lint * fix docstring * fix docstring * address comments * improve notation consistence * use preferred fn 26 January 2021, 15:34:12 UTC
8900450 [Example] DAGNN (#2545) * dagnn * dagnn * Update README.md * Update README.md * fixed some details * fixed some details * Update README.md * Update README.md Co-authored-by: Mufei Li <mufeili1996@gmail.com> 26 January 2021, 09:06:32 UTC
c45f6eb [Bugfix] Fix duplicate edges in Coauthor Dataset #2553 (#2569) * fix * address comment 26 January 2021, 07:30:27 UTC
6c23fba [Doc][Org] move edge_softmax to functional (#2442) * move edge_softmax to functional * change examples * fixes * revert * fix * fix * remove * fix * test * add init Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 26 January 2021, 04:46:37 UTC
a613ad8 Refactor code for retaining formats in message-passing. (#2570) 25 January 2021, 08:55:16 UTC
0f9056e [feature] Implement missing CUDA operators for COO format (part 1). (#2565) * upd * upd * upd * upd * fix * upd * upd Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> 25 January 2021, 08:15:22 UTC
25ac334 [Distributed] Heterogeneous graph support (#2457) * Distributed heterograph (#3) * heterogeneous graph partition. * fix graph partition book for heterograph. * load heterograph partitions. * update DistGraphServer to support heterograph. * make DistGraph runnable for heterograph. * partition a graph and store parts with homogeneous graph structure. * update DistGraph server&client to use homogeneous graph. * shuffle node Ids based on node types. * load mag in heterograph. * fix per-node-type mapping. * balance node types. * fix for homogeneous graph * store etype for now. * fix data name. * fix a bug in example. * add profiler in rgcn. * heterogeneous RGCN. * map homogeneous node ids to hetero node ids. * fix graph partition book. * fix DistGraph. * shuffle eids. * verify eids and their mappings when loading a partition. * Id map from homogneous Ids to per-type Ids. * verify partitioned results. * add test for distributed sampler. * add mapping from per-type Ids to homogeneous Ids. * update example. * fix DistGraph. * Revert "add profiler in rgcn." This reverts commit 36daaed8b660933dac8f61a39faec3da2467d676. * add tests for homogeneous graphs. * fix a bug. * fix test. * fix for one partition. * fix for standalone training and evaluation. * small fix. * fix two bugs. * initialize projection matrix. * small fix on RGCN. * Fix rgcn performance (#17) Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal> * fix lint. * fix lint. * fix lint. * fix lint. * fix lint. * fix lint. * fix. * fix test. * fix lint. * test partitions. * remove redundant test for partitioning. * remove commented code. * fix partition. * fix tests. * fix RGCN. * fix test. * fix test. * fix test. * fix. * fix a bug. * update dmlc-core. * fix. * fix rgcn. * update readme. * add comments. Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal> Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal> * fix. * fix. * add div_int. * fix. * fix. * fix lint. * fix. * fix. * fix. * adjust. * move code. * handle heterograph. * return pytorch tensor in GPB. * remove some tests in example. * add to_block for distributed training. * use distributed to_block. * remove unnecessary function in DistGraph. * remove distributed to_block. * use pytorch tensor. * fix a bug in ntypes and etypes. * enable norm. * make the data loader compatible with the old format. * fix. * add comments. * fix a bug. * add test for heterograph. * support partition without reshuffle. * add test. * support partition without reshuffle. * fix. * add test. * fix bugs. * fix lint. * fix dataset. * fix for mxnet. * update docstring. * rename to floor_div * avoid exposing NodePartitionPolicy and EdgePartitionPolicy. * fix docstring. * fix error. * fixes. * fix comments. * rename. * rename. * explain IdMap. * fix docstring. * fix docstring. * update docstring. * remove the code of returning heterograph. * remove argument. * fix example. * make GraphPartitionBook an abstract class. * fix. * fix. * fix a bug. * fix a bug in example * fix a bug * reverse heterograph sampling. * temp fix. * fix lint. * Revert "temp fix." This reverts commit c450717b9f578b8c48769c675f2a19d6c1e64381. * compute norm. * Revert "reverse heterograph sampling." This reverts commit bd6deb7f52998de76508f800441ff518e2fadcb9. * fix. * move id_map.py * remove check * add more comments. * update docstring. Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal> Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-62-171.ec2.internal> 25 January 2021, 03:18:00 UTC
aa884d4 [doc][fix] Improve the docstring and fix its behavior in DGL's kernel (#2563) * upd * fix * lint * fix * upd 24 January 2021, 16:18:57 UTC
a6abffe [Fix] Don't create extra formats in dataloader (#2551) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 24 January 2021, 12:59:24 UTC
2288098 [Feature] Converting a block to a graph and allow block construction (#2555) * first commit * more commit * fix and docstring * add to api reference * address comments * Update convert.py 24 January 2021, 04:44:54 UTC
7ff2662 [Fix] Better Error Message for node_type_subgraph (#2554) * Update * Update * Update 21 January 2021, 07:12:05 UTC
9d90faf Use ALG2 for SpMM in cuSparse (#2550) 21 January 2021, 03:12:30 UTC
2c6d071 [Feature] QM9 Dataset Support (#2521) * [Model] MixHop for Node Classification task * [docs] update * [docs] update * [fix] remove seed option * [fix] update readme * [feature] support qm9 dataset * [style] update * [docs] fix the details * [fix] indexing only support int * [style] update * [fix] multiple backends support * [docs] add qm9 * [fix] Z type: float32 -> int32 * [fix] Z type: int32 -> long * [docs] add ref * [docs] fix * [docs] update * [docs] update * [fix] test eval * [docs] fix example Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal> Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> 20 January 2021, 17:33:30 UTC
0c15657 [Test] API benchmarks (#2542) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update * add benchmarks * add * fix * update * remove RandomState * tmp remove * new batch * fix * fix * fix * address comment * fix warning * fix Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 20 January 2021, 12:02:54 UTC
8a2b54d Add a TensorFlow example for SGC (#2480) This is a TensorFlow implementation of Simple Graph Convolution. For simplicity, we use the implementation of AdamW in TensorFlow Addons that differs from Adam in PyTorch. This results in worse performance on the evaluation datasets. Co-authored-by: Josh Carty <joshuac@spotify.com> Co-authored-by: Zihao Ye <expye@outlook.com> 20 January 2021, 07:35:32 UTC
917a755 [Fix] fix version check (#2544) 19 January 2021, 11:35:43 UTC
9a9a06e [Bug Fix] Fix undefined var bug in LegacyTUDataset (#2543) * [Bug Fix] Fix undefined var bug in LegacyTUDataset * upt * [Bug Fix] Fix cache file name bug in TUDataset Co-authored-by: Tong He <hetong007@gmail.com> 19 January 2021, 05:58:01 UTC
b36b6c2 [Example] Add HGP-SL example for pytorch backend (#2515) * add sagpool example for pytorch backend * polish sagpool example for pytorch backend * [Example] SAGPool: use std variance * [Example] SAGPool: change to std * add sagpool example to index page * add graph property prediction tag to sagpool * [Example] add graph classification example HGP-SL * [Example] fix sagpool * fix bug * [Example] change tab to space in README of hgp-sl * remove redundant files * remote redundant network * [Example]: change link from code to doc in HGP-SL * [Example] in HGP-SL, change to meaningful name * [Example] Fix path mistake for 'hardgat' Co-authored-by: zhangtianqi <tianqizh@amazon.com> 18 January 2021, 09:01:52 UTC
1caf01d Add one paper 18 January 2021, 06:28:22 UTC
6b46382 Update README.md 18 January 2021, 06:01:54 UTC
8c8c5b1 [Bug fix] Stop erasing schemas of frames with no data rows (#2529) * added option for batching empty data, fixes #2526 * added option for batching empty data, fixes #2526 * decreased line lengths * removed trailing whitespace * fixed wrong feature name * [Bugfix] stop erasing schema of frames w/ no cols (fixes #2528) * removed arg doc Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 17 January 2021, 02:32:47 UTC
673cc64 [Example] Add hardGAT example (#2486) * Add hgat example * Add experiment * Clean code * clear the code * Add index in README * Add index in README * Add index in README * Add index in README * Add index in README * Add index in README * Change the code title and folder name * Ready to merge * Prepare for rebase and change message passing function * use git ignore to handle empty file * change file permission to resolve empty file * Change permission * change file mode Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com> Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com> 15 January 2021, 08:58:19 UTC
121ee7c Update PULL_REQUEST_TEMPLATE.md (#2541) 15 January 2021, 08:10:37 UTC
5da3439 [Feature] Add Device Flag in Data Loaders (#2450) * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 14 January 2021, 23:39:26 UTC
b1fb3c1 Update example README.md 14 January 2021, 09:19:13 UTC
0ab9167 Update CONTRIBUTORS.md (#2538) 14 January 2021, 09:09:00 UTC
c29daae Add API benchmarks (#2522) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update * add benchmarks * add * fix * update * remove RandomState * tmp remove Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 14 January 2021, 07:53:28 UTC
0778766 [Bug fix] [Feature] added option for batching empty data (#2527) * added option for batching empty data, fixes #2526 * added option for batching empty data, fixes #2526 * decreased line lengths * removed trailing whitespace * fixed wrong feature name * now default behavior when all graphs are empty Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 14 January 2021, 07:25:13 UTC
4d89b54 [Bug] Fix munmap() using wrong parameter (#2519) * fix munmap() using wrong parameter * rename variables Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 14 January 2021, 07:00:49 UTC
a6ec848 [Doc] Update FAQ (#2536) 14 January 2021, 06:26:02 UTC
1db7588 fix. (#2534) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 14 January 2021, 06:23:36 UTC
bedccc2 fix 2532 (#2533) 14 January 2021, 05:40:25 UTC
a9e16c1 [Example] GNN-FiLM (#2476) * gnnfilm * update * readme Co-authored-by: zhjwy9343 <6593865@qq.com> 13 January 2021, 14:34:14 UTC
c448e61 [Doc] CN User Guide Chapter 7 (#2481) * [Doc] Add Chapter 7 * [Doc] Add CN part 7, 7.1, 7.2, and 7.3 * [Doc] Add CN part 7, 7.1, 7.2, and 7.3 * [Doc] 1st round copyediting, 7, 7.1, 7.2, and 7.3, removing EN parts. * [Doc] 2nd round copyediting. * [Doc] 3rd round copyediting. * [Doc] Copyedit with reviewers' comments. Co-authored-by: Mufei Li <mufeili1996@gmail.com> 13 January 2021, 11:28:20 UTC
31f65f0 [Doc] user guide CN chapter 6 (#2452) * [Doc] Add 1st CN in chapter 6 * [Doc] Add 1st CN in chapter 6 * [Doc] Add 1st CN in chapter 6.1 * [Doc] Add 1st CN in chapter 6.1 * [Doc] Add 1st CN in chapter 6.2 * [Doc] Add CN in chapter 6.2 * [Doc] Add CN in chapter 6.3 * [Doc] Fix a code bug in chapter 6.3 * [Doc] Add CN in chapter 6.4, 6.5, and 6.6. * [Doc] Add CN in chapter 6.4, 6.5, and 6.6,then remove EN parts. * [Doc] revised 6.4, 6.5, and 6.6. * [Doc] 2nd round of copyediting. * Delete syn1.bin Remove this unrelated file to this branch * [Doc] Update guide_cn index.rst. * [Doc] Update guide_cn index.rst. * [Doc] Update guide_cn index.rst. * [Doc] Update guide_cn index.rst. * [Doc] Add chapter 7 in index page * [Doc] edit chapter 6 in PR * [Doc] edit chapter 6 in PR * [Doc] Copyediting with Murphy and Minjie's comments. * [Doc] Fix doc line in the previous chapters. Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> Co-authored-by: Mufei Li <mufeili1996@gmail.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 13 January 2021, 09:12:33 UTC
54f186b Fix (#2524) Co-authored-by: Ubuntu <ubuntu@ip-172-31-59-204.ec2.internal> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 13 January 2021, 07:09:21 UTC
80fdcfd [Example] Graph Random Neural Network (#2502) * Add Implementation of GRAND * Performance updated * Update README.md add indexing entries * add indexing entries for grand * change grand from 2021 to 2020 * [Example] fix some bugs * [Examples] fix bug Co-authored-by: 张恒瑞 <hengrui@macbook.local> Co-authored-by: 张恒瑞 <hengrui@192.168.124.35> Co-authored-by: zhjwy9343 <6593865@qq.com> 13 January 2021, 06:06:47 UTC
1502c56 [Doc] Fix typo of datasets (#2517) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 13 January 2021, 04:34:47 UTC
1e69bf5 [Paper List] Add Three Papers (#2525) * Update README.md * Update README.md * Update README.md 12 January 2021, 19:33:38 UTC
498505b [Doc] fix docserver build for tutorials (#2518) * fix doc build * hide GPU code 12 January 2021, 09:55:58 UTC
5d4995e Update README.md (#2510) fix typo Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> 12 January 2021, 05:14:10 UTC
9fb3763 fix (#2516) 12 January 2021, 01:53:19 UTC
7128399 Integrate Regression Test with Jenkins (#2448) * add bench jenkins * instance type * fix * fix * fix * 111 * test * 111 * 111 * fix * test * run * fix * fix * fix * fix * fix * publish results * 111 * regression * launch ec2 script * fix * add * run on master * change * rrr * run gpu * fix * fix * try fix * fix * ff * fix * fix * fix * refactor * fix * fix * update * fix * fix * fix * fix * remove import torchtext * add shm size * update * fix * fix * fix * fix * fix this!!!! * 111 * fix * remove verbose * fix * fix * fix * fix * fix * fix * fix * fix * update readme * fix * fix * fix * change asv default to head * commit sage and rgcn * fix * update 11 January 2021, 08:01:51 UTC
4e7a646 add one paper (#2513) 11 January 2021, 07:18:27 UTC
4807862 [Doc] Add two papers to Awesome papers list (#2511) * PPIDataset * Revert "PPIDataset" This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a. * data pipeline user guide * remove chapter numbers * Update data.rst * image in dataset userguide * update links using ref * modify the link of save_graphs and load_graphs in dataset user guide * move image to s3 server. * fix links and ref * Hide implementations that may cause confusions to the user * add papers * fix number of classes in Amazon Cobuy datasets * add two papers to Awesome paper list * Update README.md 11 January 2021, 06:30:30 UTC
a9f8f25 [Doc] Update GraphDataLoader in our docs (#2504) * update graphdataloader in docs * fix * update examples * fix sagpool Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> 11 January 2021, 05:11:19 UTC
e018939 [Tutorial] New tutorials for small graphs (#2482) * new tutorials for small graphs * address changes and use GraphDataLoader * fix and add data * fix load_data * style fixes * Update 5_graph_classification.py 10 January 2021, 14:24:21 UTC
16169f3 [Test] Regression speed test for rgcn with neighbor sampling (#2461) * Add sage neighbor sample test for reddit * Add ogbn-products dataset * upd * upd * Add ogbn-mag * rgcn heterogeneous performance test * upd * update * upd * upd * use dgl dataloader * upd * Update with new collator Co-authored-by: Ubuntu <ubuntu@ip-172-31-59-204.ec2.internal> 09 January 2021, 16:03:45 UTC
400687d add venue label filename; delete redundant code (#2491) Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> 08 January 2021, 09:05:33 UTC
bdb88df [Performance] Allow DataLoaders to return indices of the seed array (#2495) * return indices from dataloader * fixes * fix * fix distgraph and added some todos * Update dataloader.py * Update dataloader.py Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com> 08 January 2021, 06:30:52 UTC
7994069 [Examples][Bug] fix a silly typo in JTNN (#2505) 07 January 2021, 12:14:45 UTC
e2e524d [Feature] Add GraphDataLoader implementation (#2496) * add graph dataloader * add to doc * fix * fix * fix docstring * update according to torch default_collate * add unittest * fix * fix lint * fix 07 January 2021, 05:38:21 UTC
fa5f4d6 [Doc] Hotfix on docstring of set_batch_num_edges (#2498) 06 January 2021, 13:45:04 UTC
2caac08 [Bug] send_and_recv and pull may write to wrong places (#2497) * fix * fix test 06 January 2021, 09:18:37 UTC
4507beb add compute_loss example in link prediction user guide (#2487) 06 January 2021, 06:27:51 UTC
0c2a2ea [Bugfix] Handle a Corner Case of Batching after Removing Nodes/Edges (#2465) * Update * Update * Update Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> 05 January 2021, 14:22:03 UTC
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