Revision 0d31b42213634c70b1776dd20c30b64fe3d0ff4c authored by Emmanuel Paradis on 17 July 2006, 00:00:00 UTC, committed by Gabor Csardi on 17 July 2006, 00:00:00 UTC
1 parent 2e71c2f
DESCRIPTION
Package: ape
Version: 1.8-4
Date: 2006-07-17
Title: Analyses of Phylogenetics and Evolution
Author: Emmanuel Paradis <paradis@isem.univ-montp2.fr>,
Korbinian Strimmer <strimmer@stat.uni-muenchen.de>,
Julien Claude <claude@isem.univ-montp2.fr>,
Gangolf Jobb <gangolf.deletethis@treefinder.de>,
Rainer Opgen-Rhein <opgen@stat.uni-muenchen.de>,
Julien Dutheil <julien.dutheil@univ-montp2.fr>,
Yvonnick Noel <noel@univ-lille3.fr>,
Ben Bolker <bolker@zoo.ufl.edu>,
Jim Lemon <jim@bitwrit.com.au>
Maintainer: Emmanuel Paradis <paradis@isem.univ-montp2.fr>
Depends: R (>= 2.0.0)
Suggests: gee, nlme, lattice
ZipData: no
Description: Ape provides functions for reading, writing, plotting,
and manipulating phylogenetic trees, analyses of comparative data
in a phylogenetic framework, analyses of diversification and
macroevolution, computing distances from allelic and nucleotide
data, reading nucleotide sequences, and several tools such as
Mantel's test, computation of minimum spanning tree, the population
parameter theta based on various approaches, nucleotide diversity,
generalized skyline plots, estimation of absolute evolutionary rates
and clock-like trees using non-parametric rate smoothing, conversion
of APE trees to and from hclust objects and for classifying genes in
trees using the Klastorin-Misawa-Tajima approach. Phylogeny estimation
can be done with the NJ and ML methods.
License: GPL version 2 or newer
Packaged: Mon Jul 17 15:03:03 2006; paradis
Computing file changes ...