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09 January 2021, 06:17:16 UTC
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0d58134 prashantpandey18 December 2020, 05:05:14 UTCMerge branch 'development'18 December 2020, 05:05:16 UTC
d5653f8 prashantpandey18 December 2020, 05:04:37 UTCHandling counter expansion for remainder 0.18 December 2020, 05:04:37 UTC
d48a87a Prashant Pandey10 April 2020, 03:29:40 UTCMerge branch 'development'10 April 2020, 03:29:41 UTC
be13be1 Prashant Pandey10 April 2020, 03:28:35 UTCFixing function name bug.10 April 2020, 03:28:35 UTC
30cd71e Prashant Pandey10 April 2020, 03:10:19 UTCMerge branch 'development'10 April 2020, 03:10:20 UTC
b72cf65 Prashant Pandey10 April 2020, 03:10:04 UTCPorting changes from CQF repo.10 April 2020, 03:10:04 UTC
695edb8 Prashant Pandey06 December 2019, 21:02:38 UTCMerge branch 'master' of github.com:splatlab/squeakr06 December 2019, 21:02:38 UTC
b86f490 Prashant Pandey06 December 2019, 21:02:12 UTCMerge branch 'development'06 December 2019, 21:02:14 UTC
8750e71 Prashant Pandey06 December 2019, 21:01:45 UTCMerge branch 'development' of github.com:splatlab/squeakr into development06 December 2019, 21:01:45 UTC
f3e3991 Prashant Pandey06 December 2019, 21:01:37 UTCUpdate lognumslots.sh script according to the new ntCard format.06 December 2019, 21:01:37 UTC
5ad2ad6 Prashant Pandey11 October 2019, 04:43:46 UTCMerge branch 'development'11 October 2019, 04:43:47 UTC
aa30936 Prashant Pandey11 October 2019, 04:43:32 UTCFixing a minor bug in handling symbol N at the end of the read.11 October 2019, 04:43:32 UTC
7d1229e Prashant Pandey13 August 2019, 04:20:32 UTCMerge branch 'development'13 August 2019, 04:20:33 UTC
5b7b3e8 Prashant Pandey13 August 2019, 04:20:17 UTCRemoving fallocate and updating version to 0.713 August 2019, 04:20:17 UTC
6131c30 Prashant Pandey13 August 2019, 04:17:55 UTCMerge branch 'master' of github.com:splatlab/squeakr13 August 2019, 04:17:55 UTC
d756ce8 Prashant Pandey13 August 2019, 04:12:40 UTCMerge branch 'development'13 August 2019, 04:17:28 UTC
661a9ad Prashant Pandey13 August 2019, 04:12:40 UTCMerge branch 'development'13 August 2019, 04:12:41 UTC
1ab98c9 Prashant Pandey03 August 2019, 00:06:16 UTCpartitioned counter files.03 August 2019, 00:06:16 UTC
0f6ef28 Prashant Pandey03 August 2019, 00:04:41 UTCAdding new partitioned counter code from the CQF.03 August 2019, 00:04:41 UTC
a2738f9 Prashant Pandey08 July 2019, 20:41:21 UTCMerge branch 'development'08 July 2019, 20:41:22 UTC
57fe816 Prashant Pandey08 July 2019, 20:41:11 UTCRemoving ntHash file. Not needed.08 July 2019, 20:41:11 UTC
0c000e5 Prashant Pandey08 July 2019, 20:39:33 UTCMerge branch 'master' into development08 July 2019, 20:39:34 UTC
5eeb02f Prashant Pandey08 July 2019, 17:16:02 UTCMerge branch 'development'08 July 2019, 17:16:03 UTC
d0e0eae Prashant Pandey08 July 2019, 17:15:49 UTCRemoving fallocate call from file-backed CQF code in Squeakr. Not needed.08 July 2019, 17:15:49 UTC
8a57916 Prashant Pandey08 April 2019, 20:29:45 UTCMerge branch 'development'08 April 2019, 20:29:46 UTC
16742be Prashant Pandey08 April 2019, 20:29:04 UTCUpdating lognumslots.sh script based on the new ntCard format.08 April 2019, 20:29:04 UTC
346f581 Prashant Pandey04 January 2019, 19:24:18 UTCMerge branch 'development'04 January 2019, 19:24:19 UTC
f5d2feb Prashant Pandey04 January 2019, 19:24:04 UTCChaing info to mmap Squeakr file.04 January 2019, 19:24:04 UTC
88589e9 Prashant Pandey04 January 2019, 19:21:35 UTCMerge branch 'master' into development04 January 2019, 19:21:36 UTC
251dfec Prashant Pandey21 December 2018, 16:44:29 UTCUpdate README.md21 December 2018, 16:44:29 UTC
4ae3ca9 Prashant Pandey06 November 2018, 17:51:34 UTCMerge branch 'development'06 November 2018, 17:51:35 UTC
ba24903 Prashant Pandey06 November 2018, 17:51:20 UTCRemoving todo list.06 November 2018, 17:51:20 UTC
754a28c Prashant Pandey06 November 2018, 17:49:39 UTCMerge branch 'development'06 November 2018, 17:49:40 UTC
12dcdc7 Prashant Pandey06 November 2018, 17:49:24 UTCminor change in script.06 November 2018, 17:49:24 UTC
c1bd187 Prashant Pandey06 November 2018, 17:47:38 UTCMerge branch 'refactoring_new_cli' into development06 November 2018, 17:47:41 UTC
a4d4b0e Prashant Pandey06 November 2018, 17:45:37 UTCmerge06 November 2018, 17:45:37 UTC
8e25799 Prashant Pandey06 November 2018, 17:42:52 UTCMerge branch 'refactoring_new_cli' of github.com:splatlab/squeakr into refactoring_new_cli06 November 2018, 17:43:57 UTC
9acdaf5 Prashant Pandey06 November 2018, 17:42:52 UTCMerge branch 'refactoring_new_cli' of github.com:splatlab/squeakr into refactoring_new_cli06 November 2018, 17:42:52 UTC
eaad699 Prashant Pandey06 November 2018, 16:29:10 UTCmore on README.06 November 2018, 17:42:13 UTC
8ebaff7 Prashant Pandey06 November 2018, 16:29:10 UTCmore on README.06 November 2018, 16:29:10 UTC
a401367 Prashant Pandey06 November 2018, 16:28:13 UTCmore on README.06 November 2018, 16:28:13 UTC
1d166e1 Prashant Pandey06 November 2018, 16:24:51 UTCmore on README.06 November 2018, 16:24:51 UTC
f1a8ced Prashant Pandey06 November 2018, 16:05:18 UTCminor error log change.06 November 2018, 16:05:18 UTC
83df47e Prashant Pandey06 November 2018, 15:57:00 UTCUpdating README.06 November 2018, 15:57:00 UTC
d7fd93e Prashant Pandey06 November 2018, 15:46:09 UTCUpdating README.06 November 2018, 15:46:09 UTC
a315fe3 Prashant Pandey01 November 2018, 21:17:29 UTCminor fix in filtering..01 November 2018, 21:17:29 UTC
9bea05f Prashant Pandey01 November 2018, 20:43:41 UTCremoving a dangling cout..01 November 2018, 20:43:41 UTC
ad17e0a Prashant Pandey01 November 2018, 20:39:36 UTCminor fix in filtering code for no counts..01 November 2018, 20:39:36 UTC
e8b9aa9 Rob Patro01 November 2018, 15:16:09 UTCUpdate reader.h Change default `part_size`01 November 2018, 15:16:09 UTC
797f838 Rob Patro01 November 2018, 15:15:39 UTCUpdate count.cc01 November 2018, 15:15:39 UTC
3adf630 Rob Patro01 November 2018, 15:14:57 UTCUpdate gqf_cpp.h fix return type for range()01 November 2018, 15:14:57 UTC
52c8384 Prashant Pandey08 October 2018, 16:49:23 UTCMerge branch 'refactoring_new_cli' of github.com:splatlab/squeakr into refactoring_new_cli08 October 2018, 16:49:23 UTC
e55f450 Prashant Pandey08 October 2018, 16:49:17 UTCFixing a k-mer parsing corner case when N is the last base of the read.08 October 2018, 16:49:17 UTC
0bec58e Prashant Pandey16 September 2018, 22:21:34 UTCChanging open flag in qf_usefile.16 September 2018, 22:21:34 UTC
56bf8a4 Prashant Pandey13 September 2018, 23:45:54 UTCminor gqf file fix porting.13 September 2018, 23:45:54 UTC
3f7c4f6 Prashant Pandey18 August 2018, 02:05:41 UTCPorting CQF changes in the initfile and usefile API.18 August 2018, 02:05:41 UTC
2b9f036 Prashant Pandey13 August 2018, 22:49:18 UTCupdating todo.13 August 2018, 22:49:18 UTC
000ef16 Prashant Pandey13 August 2018, 18:00:02 UTCAdding info command to Squeakr.13 August 2018, 18:00:02 UTC
a509af4 Prashant Pandey11 August 2018, 06:55:26 UTCminor changes.11 August 2018, 06:55:26 UTC
9c48515 Prashant Pandey10 August 2018, 20:28:45 UTCminor10 August 2018, 20:28:45 UTC
28b68af Prashant Pandey10 August 2018, 19:40:21 UTCminor bug in testing.10 August 2018, 19:40:21 UTC
ba9e500 Prashant Pandey10 August 2018, 18:18:21 UTCfixing minor resize bug.10 August 2018, 18:18:21 UTC
c8b7f7b Prashant Pandey08 August 2018, 23:47:41 UTCFixing resizing issue.08 August 2018, 23:47:41 UTC
7bbb6ee Prashant Pandey08 August 2018, 05:23:19 UTCminor resizing changes.08 August 2018, 05:23:19 UTC
e15c583 Prashant Pandey07 August 2018, 18:50:02 UTCpartial argument check for auto resizing.07 August 2018, 18:50:02 UTC
24737c4 Prashant Pandey02 August 2018, 19:55:32 UTCPorting updated code from CQF.02 August 2018, 19:55:32 UTC
0d506fc Prashant Pandey01 August 2018, 22:41:28 UTCRemoving metadata updates in the CQF code.01 August 2018, 22:41:28 UTC
9392eaa Prashant Pandey01 August 2018, 03:46:24 UTC1. Porting latest CQF code. 2.Fixing some commands issues from the todo file. 3. Fixing author blocks.01 August 2018, 03:46:24 UTC
97e1d99 Rob Johnson31 July 2018, 23:05:09 UTCtodo31 July 2018, 23:05:09 UTC
9845a02 Prashant Pandey26 July 2018, 22:23:24 UTCAdding config file.26 July 2018, 22:23:24 UTC
a6e1560 Prashant Pandey26 July 2018, 01:32:34 UTCAdding a version number in squeakr config.26 July 2018, 01:32:34 UTC
18edf83 Prashant Pandey26 July 2018, 00:27:13 UTCPorted code from the CQF. Adding cutoff and no-count argument. Estimation works properly.26 July 2018, 00:27:13 UTC
1042510 Prashant Pandey25 July 2018, 07:20:21 UTCEstimation code working.25 July 2018, 07:20:21 UTC
efe3b64 Prashant Pandey24 July 2018, 00:59:19 UTCUpdating make clean to remove the object dir.24 July 2018, 00:59:19 UTC
fbc81b7 Prashant Pandey23 July 2018, 22:38:43 UTCPorted latest CQF API. Tested on the sample data set.23 July 2018, 22:38:43 UTC
5f2ff63 Prashant Pandey17 July 2018, 18:21:11 UTCPartial commit17 July 2018, 18:21:11 UTC
8918f96 Prashant Pandey14 July 2018, 06:49:08 UTCtested query and listing.14 July 2018, 06:49:08 UTC
3113ae8 Prashant Pandey14 July 2018, 06:40:26 UTC1. Removing warning flags. 2. Adding cutoff.14 July 2018, 06:40:26 UTC
5424c50 Prashant Pandey26 June 2018, 01:11:06 UTCRemoving unwanted code.26 June 2018, 01:11:06 UTC
3c95ad4 Prashant Pandey26 June 2018, 00:42:26 UTCAdding cutoff argument.26 June 2018, 00:42:26 UTC
48a4145 Prashant Pandey26 June 2018, 00:41:55 UTCAdding cutoff argument.26 June 2018, 00:41:55 UTC
55f0f3f Prashant Pandey26 June 2018, 00:35:27 UTCfixing a small bug in k-mer parsing.26 June 2018, 00:35:27 UTC
6780878 Prashant Pandey26 June 2018, 00:03:03 UTCAdding code for write k-mer size at the end of the file.26 June 2018, 00:03:03 UTC
19748c0 Prashant Pandey25 June 2018, 22:22:42 UTCAdding listing k-mers during query.25 June 2018, 22:22:42 UTC
7438802 Prashant Pandey25 June 2018, 21:32:45 UTCfixing list API.25 June 2018, 21:32:45 UTC
79d8bfa Prashant Pandey25 June 2018, 21:28:18 UTCsome more fixes in the CLI25 June 2018, 21:28:18 UTC
03aee16 Prashant Pandey25 June 2018, 21:26:09 UTCsome more fixes in the CLI25 June 2018, 21:26:09 UTC
64161f1 Prashant Pandey02 June 2018, 01:08:33 UTCTested listing kmers.02 June 2018, 01:08:33 UTC
8d7a80f Prashant Pandey02 June 2018, 00:02:56 UTCMinor bug.02 June 2018, 00:02:56 UTC
9b9b095 Prashant Pandey02 June 2018, 00:00:48 UTCChanged query API.02 June 2018, 00:00:48 UTC
cbbf9df Prashant Pandey01 June 2018, 06:25:18 UTCAdding logger to time.01 June 2018, 06:25:18 UTC
3a74eae Prashant Pandey01 June 2018, 06:23:53 UTCAdding logger to time.01 June 2018, 06:23:53 UTC
61cfa12 Prashant Pandey01 June 2018, 06:17:12 UTCAdding console logging to other files.01 June 2018, 06:17:12 UTC
604dc85 Prashant Pandey01 June 2018, 06:10:07 UTCUsing logger to log.01 June 2018, 06:10:07 UTC
a072e10 Prashant Pandey31 May 2018, 17:13:14 UTCRemoved auto resize.31 May 2018, 17:13:14 UTC
4ab19dc Prashant Pandey31 May 2018, 00:49:57 UTCMaking size and threads optional.31 May 2018, 00:49:57 UTC
245fda6 Prashant Pandey30 May 2018, 22:45:32 UTCTest counting.30 May 2018, 22:45:32 UTC
4ea7f50 Prashant Pandey30 May 2018, 20:29:40 UTCTesting counting now.30 May 2018, 20:29:40 UTC
8496787 Prashant Pandey30 May 2018, 19:52:58 UTCMore refactoring. Code compiles now.30 May 2018, 19:52:58 UTC
333702c Prashant Pandey30 May 2018, 06:21:36 UTCMore refactoring. Getting closer.30 May 2018, 06:21:36 UTC
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