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Revision Author Date Message Commit Date
0da1363 globocan 2020 documentation 10 May 2021, 12:36:57 UTC
2d30bbf set key 10 May 2021, 12:00:18 UTC
198f361 globocan 2020 (including interpolation) 07 May 2021, 10:53:32 UTC
ecf53a2 Create LICENSE 28 March 2021, 01:26:45 UTC
98fbb14 globocan 2020 24 March 2021, 08:19:53 UTC
7e8b9ac update function for globocan 2020 24 March 2021, 08:07:55 UTC
3d0242e add globocan 2020 cecx burden estimates 24 March 2021, 07:50:23 UTC
be65df3 crude 14 January 2021, 05:10:17 UTC
90147cd Update functions.R 14 January 2021, 02:33:40 UTC
8d8f255 documentation 23 November 2020, 03:17:41 UTC
4b8b491 documentation 21 October 2020, 14:10:07 UTC
ec93d91 documentation 21 October 2020, 11:27:55 UTC
2448412 Update functions.R 21 October 2020, 05:41:57 UTC
3e174d1 psa documentation 21 October 2020, 05:37:28 UTC
99ed930 add functions for emulating probabilistic sensitivity analysis 21 October 2020, 04:55:21 UTC
ab18396 website url update 18 February 2020, 16:13:56 UTC
a96bedd updated meev website url 17 February 2020, 18:05:13 UTC
2d3c9b0 prevalence is included in the results output 15 February 2020, 00:38:40 UTC
eb0ece5 agecohort is set to age of vaccination 10 February 2020, 21:06:00 UTC
e9ae734 cohort sizes are included for ages less than vaccination age 10 February 2020, 16:04:22 UTC
9e8e751 Update functions.R 07 February 2020, 23:46:00 UTC
ba2d2f1 documentation 07 February 2020, 17:40:01 UTC
1eb2bab Update functions.R # return batch data of cohorts with vaccination coverage return (.data.batch) 07 February 2020, 17:29:00 UTC
0af2b69 Proxy set for countries with unavailable data Proxy set for countries (Kosovo & Palestine) with unavailable data for demography/disease burden/cost. 26 January 2020, 23:06:20 UTC
3b26eff version 2.0.11 (start) 02 January 2020, 15:17:33 UTC
5b2141d unwpp nqx update complete (mx changed to nqx) 02 January 2020, 15:10:18 UTC
7491b10 unwpp 2019 update complete updated prime to (i) read in nqx file (instead of mx file) (ii) compute mx from nqx (iii) compute qx from mx 25 December 2019, 13:40:43 UTC
0553970 runs for PSE 09 December 2019, 16:20:55 UTC
7dcc0fa 9vHPV added and reverted back to UNWPP 2017 05 December 2019, 20:45:07 UTC
54e2e65 Update functions.R 16 October 2019, 18:46:36 UTC
0810071 vaccine price updated for 2 doses (from 3 doses) 16 October 2019, 11:21:15 UTC
96853fc update burden estimates 15 October 2019, 17:27:17 UTC
c434c06 burden updates 14 October 2019, 18:13:15 UTC
af7fa0e Update DESCRIPTION 13 October 2019, 14:27:28 UTC
5c39583 version 2.0.9 -- demography updated to unwpp 2019 estimates 13 October 2019, 14:21:24 UTC
ea89af3 interpolated for missing data in burden estimates 11 October 2019, 16:52:50 UTC
86f664f burden uncertainty intervals data files updated 10 October 2019, 11:21:27 UTC
2f41e2d ui update 08 October 2019, 18:06:54 UTC
67f4cdc added 95% uncertainty intervals files for incidence and mortality 07 October 2019, 17:06:24 UTC
ed9c73a Update DESCRIPTION 09 September 2019, 13:41:46 UTC
67999ad Update functions.R 30 August 2019, 16:58:03 UTC
ce8262e vignettes 27 August 2019, 11:26:02 UTC
afd8e69 vignette for batch run 27 August 2019, 11:12:53 UTC
c46f496 manual updated 23 August 2019, 12:34:05 UTC
5b7aae0 Update README.md 08 August 2019, 13:45:53 UTC
f0e4100 daly weights are read from data table daly weights are read from data table; thereby, no need to send them as input variables/parameters in function calls 11 July 2019, 14:28:50 UTC
fbcaafd updated manual 31 May 2019, 14:08:14 UTC
8d138d7 daly.canc.seq calculation daly.canc.seq calculation move to RunCohort function from RunCountry function 31 May 2019, 11:03:24 UTC
ddb9737 discounting updated Original computation for YLL discounted was incorrect -- was corrected. 29 May 2019, 23:19:11 UTC
311002c Update functions.R 29 May 2019, 06:49:12 UTC
74e30ea added discounting parameter as an option in BatchRun discounting parameters added but not yet fully functional 28 May 2019, 16:47:38 UTC
840f2ca formatting 28 May 2019, 14:00:40 UTC
c2dd638 formatting 28 May 2019, 13:12:31 UTC
5d53af7 formatting 28 May 2019, 12:57:21 UTC
d358b41 formatting & documentation 28 May 2019, 01:13:25 UTC
aa9c743 canc.cost = "adj" (OR) canc.cost = "unadj" in BatchRun function call updated BatchRun function, set canc.cost to "adj" for I$ or "unadj" for US$ so that it will use cancer costs in I$/US$ from the data.costcecx data table 27 May 2019, 22:26:27 UTC
e8b480f use WB data for GDP/GNI per capita Updated for different options for GDP/GNI per capita in I$/US$ and current/constant data, and reference year (1960-2017) 27 May 2019, 14:01:48 UTC
5d5d2b4 formatting/documentation fns: monetary_to_number and writelog monetary_to_number function -- formatting/documentation writelog function -- formatting/documentation 25 May 2019, 17:14:52 UTC
5bf771b use GDP per capita PPP 2017 -- read from wbstats package 24 May 2019, 22:26:28 UTC
18e2564 version number (updated to 2.0.3) 23 May 2019, 13:48:00 UTC
4ca8b9a updated sexual debut data 23 May 2019, 13:41:24 UTC
c5194a0 Update functions.R 22 May 2019, 11:14:20 UTC
c4303d5 Update functions.R 21 May 2019, 13:05:15 UTC
9b436d0 formatting 20 May 2019, 21:12:27 UTC
4b39aaf Update data.disability_weights.rda 20 May 2019, 11:37:01 UTC
66a162c Update DESCRIPTION 17 May 2019, 14:42:12 UTC
fa8ba91 French Guyana to French Guiana 17 May 2019, 14:16:09 UTC
5123954 replaced na with 0 in cancer data files 15 May 2019, 14:53:59 UTC
baae344 updated dw -- gbd 2001 or gbd 2016 09 May 2019, 12:45:28 UTC
ae7b77c prime updated for globocan year option - 2018 or 2012 08 May 2019, 16:26:27 UTC
f6fa7ae Update functions.R 07 May 2019, 17:16:12 UTC
41496bc added disability weights file 04 May 2019, 11:04:34 UTC
7d35ce6 Update functions.R 26 April 2019, 14:52:43 UTC
2179a79 updated sexual debut data file 26 March 2019, 00:09:51 UTC
b416ae8 prime manual 15 March 2019, 21:10:35 UTC
12bfece manual 15 March 2019, 20:59:43 UTC
cc43cc8 minor 15 March 2019, 10:44:31 UTC
a591b48 Update functions.R 25 February 2019, 17:14:21 UTC
2f6b5b8 greeting 25 February 2019, 17:10:25 UTC
20d9780 Update functions.R 25 February 2019, 16:55:17 UTC
2b2bb20 Update functions.R 25 February 2019, 16:21:45 UTC
b79eead test 25 February 2019, 16:18:42 UTC
263d365 greeting 25 February 2019, 16:05:09 UTC
a1c3ba1 small edit to help file 25 February 2019, 15:11:01 UTC
11e57ee Another small edit to help files (RunCohort) 22 February 2019, 18:38:35 UTC
b5a2dfe Edit to RunCohort help file (fixing the example given) 22 February 2019, 18:24:37 UTC
0bbda30 test - ignore 22 February 2019, 17:17:44 UTC
9c93183 test commit - ignore 22 February 2019, 17:15:01 UTC
e8cdbf8 create dw list & duration list combined disability weights and duration of 4 phases of cervical cancer into 2 lists 14 December 2018, 17:37:59 UTC
86026d3 add manual 14 December 2018, 11:42:57 UTC
9cccdec DALY computation updated to be similar to GBD updates include (i) Globocan 2018 data (ii) GBD daly weights and duration for diagnosis & primary therapy, controlled, metastatic and terminal phases (ii) YLD calculation incorporates 5-year survival (iv) YLD attributed to prevalence timeline (rather than age of incidence) 12 December 2018, 18:06:38 UTC
77fa7a1 documentation 09 December 2018, 23:25:15 UTC
ca59b64 change prime2 --> prime 09 December 2018, 22:57:51 UTC
82a12f8 Update functions.R 09 December 2018, 22:36:25 UTC
9adc2e6 Update data.valid.rda 07 December 2018, 17:12:18 UTC
83c5150 data documenatation 07 December 2018, 16:48:11 UTC
b4af056 Update data.R 07 December 2018, 10:13:40 UTC
0d6752c documentation 06 December 2018, 22:55:18 UTC
eb07e3f Merge branch 'master' of https://github.com/lshtm-vimc/prime2 06 December 2018, 13:35:09 UTC
b71fe60 documentation 06 December 2018, 13:35:06 UTC
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