| 0e62dbb | Douglas Wu | 23 January 2021, 03:07:26 UTC | Update README.md | 23 January 2021, 03:07:26 UTC |
| 9729862 | wchnicholas | 21 January 2021, 02:44:23 UTC | translate before freq filter | 21 January 2021, 02:44:23 UTC |
| b3962cd | Douglas Wu | 17 January 2021, 15:58:24 UTC | fixed coverage plot py | 17 January 2021, 15:58:24 UTC |
| a042039 | Douglas Wu | 17 January 2021, 15:58:07 UTC | fixed coverage plot py | 17 January 2021, 15:58:07 UTC |
| 4717b09 | Douglas Wu | 17 January 2021, 01:50:04 UTC | fixed github workflow | 17 January 2021, 01:50:04 UTC |
| 73505aa | Douglas Wu | 17 January 2021, 01:44:48 UTC | fixed github workflow | 17 January 2021, 01:44:48 UTC |
| eb42648 | Douglas Wu | 17 January 2021, 01:43:55 UTC | fixed github workflow | 17 January 2021, 01:43:55 UTC |
| fa80f45 | Douglas Wu | 17 January 2021, 01:43:23 UTC | fixed github workflow | 17 January 2021, 01:43:23 UTC |
| 186ebc3 | Douglas Wu | 17 January 2021, 01:42:53 UTC | Delete setup.yml | 17 January 2021, 01:42:53 UTC |
| 6230438 | Douglas Wu | 17 January 2021, 01:42:31 UTC | Update test_env.yml | 17 January 2021, 01:42:31 UTC |
| 4f7bdc2 | Douglas Wu | 17 January 2021, 01:42:03 UTC | Create test_env.yml | 17 January 2021, 01:42:03 UTC |
| 3d7d6cc | Douglas Wu | 17 January 2021, 01:39:51 UTC | fixed github workflow | 17 January 2021, 01:39:51 UTC |
| 6e5cff4 | Douglas Wu | 17 January 2021, 01:05:27 UTC | added github workflow | 17 January 2021, 01:05:27 UTC |
| e3db1f7 | Douglas Wu | 17 January 2021, 00:22:48 UTC | added github workflow | 17 January 2021, 00:22:48 UTC |
| 1c6364a | Douglas Wu | 17 January 2021, 00:20:52 UTC | added github workflow | 17 January 2021, 00:20:52 UTC |
| 000559d | Douglas Wu | 16 January 2021, 23:19:45 UTC | updated pipeline | 16 January 2021, 23:19:45 UTC |
| 4d1fcdb | Douglas Wu | 16 January 2021, 23:18:10 UTC | Revert "fix coverage plot bug, and add logger" This reverts commit add518a44e5a7162f965722a12f774bdbb934d1e. | 16 January 2021, 23:18:10 UTC |
| 0ff337a | Douglas Wu | 16 January 2021, 23:17:23 UTC | reorganized | 16 January 2021, 23:17:23 UTC |
| add518a | Douglas Wu | 16 January 2021, 23:13:09 UTC | fix coverage plot bug, and add logger | 16 January 2021, 23:13:09 UTC |
| 534832e | Douglas Wu | 16 January 2021, 23:10:36 UTC | fix coverage plot arg check | 16 January 2021, 23:10:36 UTC |
| cb50c97 | Douglas Wu | 16 January 2021, 22:29:45 UTC | Merge branch 'main' of https://github.com/wckdouglas/SARS_CoV2_mutation into main | 16 January 2021, 22:29:45 UTC |
| f53434e | Douglas Wu | 16 January 2021, 22:29:39 UTC | added per sample coverage pdf | 16 January 2021, 22:29:39 UTC |
| 8bb8230 | Douglas Wu | 14 January 2021, 17:38:59 UTC | Update README.md | 14 January 2021, 17:38:59 UTC |
| 5e36ae8 | Douglas Wu | 14 January 2021, 13:26:13 UTC | Merge branch 'main' of https://github.com/wckdouglas/SARS_CoV2_mutation into main | 14 January 2021, 13:26:13 UTC |
| 99a3733 | Douglas Wu | 14 January 2021, 13:26:11 UTC | instruction for conda env | 14 January 2021, 13:26:11 UTC |
| 1d7d965 | Douglas Wu | 14 January 2021, 12:41:38 UTC | Update download_box.py | 14 January 2021, 12:41:38 UTC |
| 41bb985 | Douglas Wu | 14 January 2021, 12:33:08 UTC | instruction for conda env | 14 January 2021, 12:33:08 UTC |
| db4693d | Douglas Wu | 14 January 2021, 12:32:35 UTC | instruction for conda env | 14 January 2021, 12:32:35 UTC |
| 5b4acec | Douglas Wu | 13 January 2021, 02:00:50 UTC | added download box | 13 January 2021, 02:00:50 UTC |
| 6498079 | Douglas Wu | 13 January 2021, 01:57:18 UTC | added download box | 13 January 2021, 01:57:18 UTC |
| fb7666e | Douglas Wu | 13 January 2021, 01:45:43 UTC | added download box | 13 January 2021, 01:45:43 UTC |
| c3fa480 | Douglas Wu | 12 January 2021, 22:41:50 UTC | fixed coverage table sample name | 12 January 2021, 22:41:50 UTC |
| 82a575b | Douglas Wu | 12 January 2021, 22:16:19 UTC | fixed typo | 12 January 2021, 22:16:19 UTC |
| 114fd07 | Douglas Wu | 12 January 2021, 22:15:13 UTC | added coverage | 12 January 2021, 22:15:13 UTC |
| 5441ac2 | wchnicholas | 22 December 2020, 00:10:50 UTC | fine adjustment of the gene/mutfreq plot | 22 December 2020, 00:10:50 UTC |
| 32acb46 | Wangyiquan95 | 21 December 2020, 20:59:08 UTC | update the script to plot gene organization | 21 December 2020, 20:59:08 UTC |
| b492ad2 | wchnicholas | 16 December 2020, 20:51:46 UTC | update MBCS freq plots | 16 December 2020, 20:51:46 UTC |
| 662408a | wchnicholas | 16 December 2020, 20:51:01 UTC | Merge branch 'main' of https://github.com/wckdouglas/SARS_CoV2_mutation into main | 16 December 2020, 20:51:01 UTC |
| 53bafc2 | wchnicholas | 16 December 2020, 20:50:40 UTC | update MBCS freq plots | 16 December 2020, 20:50:40 UTC |
| ade2ac9 | wchnicholas | 14 December 2020, 18:44:25 UTC | update MBCS freq oplotting script | 14 December 2020, 18:44:25 UTC |
| ee18df4 | Wangyiquan95 | 06 December 2020, 19:09:45 UTC | SARS-CoV-2 genome organization & mutant frequency | 06 December 2020, 19:09:45 UTC |
| cb4fdce | Wangyiquan95 | 06 December 2020, 19:08:17 UTC | R script to plot genome organization and mut_freq | 06 December 2020, 19:08:17 UTC |
| 4a9c276 | Douglas Wu | 06 December 2020, 00:47:26 UTC | added extract freq in pipeline | 06 December 2020, 00:47:26 UTC |
| 07fc312 | Douglas Wu | 06 December 2020, 00:09:33 UTC | added extract freq in pipeline | 06 December 2020, 00:09:33 UTC |
| 2452662 | Douglas Wu | 05 December 2020, 23:55:13 UTC | fixed MD tag from trimbam output | 05 December 2020, 23:55:13 UTC |
| f218552 | wchnicholas | 05 December 2020, 19:09:25 UTC | add mutation frequenct analysis and plotting | 05 December 2020, 19:09:25 UTC |
| 749413e | wchnicholas | 05 December 2020, 17:23:12 UTC | Merge branch 'main' of https://github.com/wckdouglas/SARS_CoV2_mutation into main | 05 December 2020, 17:23:12 UTC |
| 0109fb8 | wchnicholas | 05 December 2020, 17:22:56 UTC | add SNP files | 05 December 2020, 17:22:56 UTC |
| 34eee35 | Douglas Wu | 05 December 2020, 01:41:45 UTC | updated png | 05 December 2020, 01:41:45 UTC |
| 8f420e0 | Douglas Wu | 05 December 2020, 01:07:25 UTC | used bamutils instead of fgbio | 05 December 2020, 01:07:25 UTC |
| 94eb913 | Douglas Wu | 04 December 2020, 21:44:30 UTC | Merge branch 'main' of https://github.com/wckdouglas/SARS_CoV2_mutation into main | 04 December 2020, 21:44:30 UTC |
| 0bf8360 | Douglas Wu | 04 December 2020, 21:44:28 UTC | updated | 04 December 2020, 21:44:28 UTC |
| 614ea68 | wchnicholas | 04 December 2020, 19:13:18 UTC | add plot mutation vs genome | 04 December 2020, 19:13:18 UTC |
| 4d84127 | wchnicholas | 04 December 2020, 19:13:00 UTC | add plot mutation vs genome | 04 December 2020, 19:13:00 UTC |
| 900fd2c | wchnicholas | 04 December 2020, 16:49:19 UTC | add MBCS analysis | 04 December 2020, 16:49:19 UTC |
| 99c970c | wchnicholas | 03 December 2020, 16:24:07 UTC | draft script for analyzing multi-basic cleavage site (MBCS) | 03 December 2020, 16:24:07 UTC |
| 2ea3a89 | Douglas Wu | 03 December 2020, 01:33:23 UTC | fixed make ref bug | 03 December 2020, 01:33:23 UTC |
| c402f4f | Douglas Wu | 02 December 2020, 20:30:17 UTC | changed parameter samtools mpileup | 02 December 2020, 20:30:17 UTC |
| 28d0f9c | Douglas Wu | 02 December 2020, 17:11:21 UTC | changed parameter samtools mpileup | 02 December 2020, 17:11:21 UTC |
| d337e9e | Douglas Wu | 02 December 2020, 17:02:50 UTC | added varscan explaination | 02 December 2020, 17:02:50 UTC |
| de3de89 | Douglas Wu | 02 December 2020, 16:58:39 UTC | added varscan explaination | 02 December 2020, 16:58:39 UTC |
| 04e3c41 | Douglas Wu | 02 December 2020, 16:55:15 UTC | initialize | 02 December 2020, 16:55:15 UTC |
| 0a6cb08 | Douglas Wu | 02 December 2020, 16:53:03 UTC | initialize | 02 December 2020, 16:53:03 UTC |
| 887fa64 | Douglas Wu | 02 December 2020, 16:48:54 UTC | initialize | 02 December 2020, 16:48:54 UTC |
| 586ee65 | Douglas Wu | 02 December 2020, 16:47:26 UTC | initialize | 02 December 2020, 16:47:26 UTC |
| d45c34b | Douglas Wu | 02 December 2020, 16:47:04 UTC | initialize | 02 December 2020, 16:47:04 UTC |
| 840ce3d | Douglas Wu | 02 December 2020, 16:46:38 UTC | initialize | 02 December 2020, 16:46:38 UTC |
| e212464 | Douglas Wu | 02 December 2020, 16:45:37 UTC | initialize | 02 December 2020, 16:45:37 UTC |
| 9d33b6b | Douglas Wu | 02 December 2020, 16:45:01 UTC | initialize | 02 December 2020, 16:45:01 UTC |
| 540b09a | Douglas Wu | 02 December 2020, 16:28:35 UTC | initialize | 02 December 2020, 16:28:35 UTC |
