https://github.com/Radiomics/pyradiomics
Revision 0f6a0d1f87370344d43afc4cea21e30430090177 authored by Joost van Griethuysen on 04 September 2017, 15:37:48 UTC, committed by Joost van Griethuysen on 06 September 2017, 14:49:00 UTC
When resampling, allow the output spacing for any dimension to be set to 0 (the parameter 'resampledPixelSpacing' still needs to be a sequence of 3 elements, but the value of any element can be 0). Doing so will enable 'preserving' the original spacing, as 0 values are replaced with the original spacing for that dimension (original spacing of the mask). This way, it is possible to only resample in-plane (by setting the out-of-plane output spacing to 0). Additionally, move the check between original and resampled spacing to after the size check (no resampling over dimensions for which bounding box size = 1) and build in a tolerance (1e-5 + 1e-8 * abs(resampledspacing)). Finally, fix data type for resampled spacing in the validation schema for parameter files (change from integer to float).
1 parent 26b9ef3
Tip revision: 0f6a0d1f87370344d43afc4cea21e30430090177 authored by Joost van Griethuysen on 04 September 2017, 15:37:48 UTC
ENH: Allow a 0 value for output spacing when resampling
ENH: Allow a 0 value for output spacing when resampling
Tip revision: 0f6a0d1
| File | Mode | Size |
|---|---|---|
| .circleci | ||
| bin | ||
| data | ||
| docs | ||
| examples | ||
| hooks | ||
| notebooks | ||
| radiomics | ||
| tests | ||
| .circleci-matrix.yml | -rw-r--r-- | 919 bytes |
| .dockerignore | -rw-r--r-- | 6 bytes |
| .editorconfig | -rw-r--r-- | 440 bytes |
| .flake8 | -rw-r--r-- | 1.1 KB |
| .gitattributes | -rw-r--r-- | 35 bytes |
| .gitignore | -rw-r--r-- | 763 bytes |
| .travis.yml | -rw-r--r-- | 710 bytes |
| CHANGES.rst | -rw-r--r-- | 23.6 KB |
| CONTRIBUTING.rst | -rw-r--r-- | 5.8 KB |
| Dockerfile | -rw-r--r-- | 3.0 KB |
| LICENSE.txt | -rw-r--r-- | 1.4 KB |
| MANIFEST.in | -rw-r--r-- | 395 bytes |
| README.md | -rw-r--r-- | 6.4 KB |
| appveyor.yml | -rw-r--r-- | 1.2 KB |
| circle.yml | -rw-r--r-- | 580 bytes |
| requirements-dev.txt | -rw-r--r-- | 101 bytes |
| requirements-setup.txt | -rw-r--r-- | 13 bytes |
| requirements.txt | -rw-r--r-- | 77 bytes |
| scikit-ci.yml | -rw-r--r-- | 1.7 KB |
| setup.cfg | -rw-r--r-- | 182 bytes |
| setup.py | -rw-r--r-- | 3.1 KB |
| versioneer.py | -rw-r--r-- | 67.0 KB |
Computing file changes ...
