| 116b0bd | Tadgh | 02 November 2021, 17:15:58 UTC | Add test showing failure of binaryutil to extract a string | 02 November 2021, 17:15:58 UTC |
| 362c2f3 | Tadgh | 01 November 2021, 17:50:57 UTC | Add 5.5.3 to versionenum (#3133) | 01 November 2021, 17:50:57 UTC |
| 1a82217 | michaelabuckley | 01 November 2021, 15:31:23 UTC | Docs and cleanup for #2997 (#3126) * Docs and cleanup for #2997 Auto-merge triggered too soon. * Change link extraction to support multi-paths. Cleanup naming. * Remove this != null check * Cleanup and comments * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa/elastic.md Co-authored-by: Tadgh <tadgh@cs.toronto.edu> * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_partitioning/partitioning.md Co-authored-by: Tadgh <tadgh@cs.toronto.edu> * Reformat and comments Co-authored-by: Tadgh <garygrantgraham@gmail.com> Co-authored-by: Tadgh <tadgh@cs.toronto.edu> | 01 November 2021, 15:31:23 UTC |
| 7c63441 | Tadgh | 30 October 2021, 19:46:42 UTC | Revert "Issue 1134 retry mechanic on subscriptions (#3121)" (#3128) This reverts commit 9b23e9e82538d7493377bf999e7819862b06093a. | 30 October 2021, 19:46:42 UTC |
| 39577eb | StevenXLi | 29 October 2021, 16:46:36 UTC | Spring batch param migration (#3124) * small change to support change to string length of spring batch execution parameters * added comment to indicate function is empty on purpose * added javadoc for this method to note it's for overriding purpose Co-authored-by: Steven Li <steven@smilecdr.com> | 29 October 2021, 16:46:36 UTC |
| 9b23e9e | TipzCM | 29 October 2021, 15:21:43 UTC | Issue 1134 retry mechanic on subscriptions (#3121) * issue-1134 initial work on adding retry handler * issue-1134 subdscription creation fixes * issue-1134 update the test * issue-1134 retry policy off canonicalsubscription * issue 1134 base subscription changes * add failing test * issue 1134 retry configs on base parameters * issue 1134 passing forward params * issue-1134 added more tests for making sure subscriptions create their channels correctly * issue-1134 updates to get the retry to channels * issue-1134 updating channel factory * issue-1134 remove the dlq since it's not defineable * issue-3120 changelog added * issue-3120 cleaning up * issue-3120 test fix * issue-3120 review fixes * issue-3120 fixed bad master merge Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: Ken Stevens <khstevens@gmail.com> | 29 October 2021, 15:21:43 UTC |
| 8a7b5c1 | Tadgh | 28 October 2021, 19:13:16 UTC | Multiple improvements (#2997) * Add failing test * Tidy test for new tokenparam style * Add removeByQualifier to SearchParameterMap * Add new property binder for search terms * Member move, add test for new parser * whoops missed an add * Passing test. Introduced SearchParamTextWrapper to give a type for the binder. Enhance FulltextSearchSvcImpl to understand TokenParams as well as StringParams. * Add more to test, change analyzer for template * Optimize imports * Minor refactoring * added eq and gt test cases * added missing gt search param tests * Search all CodeableConcepts * Extract new LuceneRuntimeSearchParam to mediate indexing and searching. * Fix up broken test with mock * Add support for identifier type * Bump for special maven package * fix-me to todo * Prevent version check * FIx version for test * DSTU2 does not support fluent path * Don't accidentally strip SPs in DSTU2 * added lt tests * Add some high-bound test cases * More test cases and new compressed format * More test cases * More test cases * Re-order columns for easier reading * Comments * Cleanup and comments * Make support :text for all token SPs * Make support :text for all token SPs * Fixed incomplete date issue * Set to the last millisecond 23:59:59.999 * Disabled 4 failed JVM/TZ related test cases * add test for failing batch bug, remove bounding on queue * remove parallelism from non-get batch operations * Fix count for test * New index layout * Notes and cleanup * Notes and cleanup * remove the jetbrains * Demote FIXME to WIP * Change :text search to be lucene simple search and use standardAnalyzer. * Change :text to require * for prefix match. * add prefix negative test * Bump version * Added changelog * Add more search parameters to lucene indexing (#3000) * dirty the branch * Add oversight to changelog * Start using jpa indexing for es * Correct negative search test * Update templates, index tokens, write new test. TODO gotta modify SB * Add test for code token search * add comment * Flesh out token search * minor cleanup and comments * Extract index handling from FulltextSearchSvcImpl * D'oh. Actually use elastic to search. * Move supported query check closer to query builder * String search test before activating lucene * Add string:exact to hibernate search. * Add string:contains search * cleanup * demote fixmes to allow build to run. * Add unmodified string search. * empty stubs for quantity and reference * Ignore magic search params in lucene index * Support full-text on all FHIR releases * Include reference lookups in ES * Fix and/or logic in _text * Test for string with space * Cherry-pick the NoFT fix * Disable advanced indexing in a bunch of tests of emitted sql. * Stub changelog * Fix :missing flag * Move DaoConfig up to BaseJpaTest to share teardown * Disable new indexing for partition test * Add a different analyzer and field for default string search vs text * checkstyle for a pre-build * Index full prefix for string search when using Lucene * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_6_0/3000-Extend-lucene-indexing.yaml Co-authored-by: Tadgh <tadgh@cs.toronto.edu> * Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/HibernateSearchQueryBuilder.java Co-authored-by: Tadgh <tadgh@cs.toronto.edu> * Review feedback. Co-authored-by: Tadgh <garygrantgraham@gmail.com> Co-authored-by: Tadgh <tadgh@cs.toronto.edu> * Remove double-check * Version bump * Fix typo Co-authored-by: Michael Buckley <michael.buckley@smilecdr.com> Co-authored-by: Long Ma <longma@Longs-MacBook-Pro.local> Co-authored-by: Frank Tao <frankjtao@gmail.com> Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> | 28 October 2021, 19:13:16 UTC |
| 05f470d | James Agnew | 28 October 2021, 18:42:06 UTC | Paging queries can generate invalid Oracle SQL (#3123) * Test fix * Add docs * Add changelog | 28 October 2021, 18:42:06 UTC |
| 2067ba8 | longma1 | 28 October 2021, 16:04:31 UTC | minor refactor to extract static string variables into a singel constants class in bulk export (#3117) Co-authored-by: Long Ma <longma@Longs-MBP.hitronhub.home> | 28 October 2021, 16:04:31 UTC |
| 8a1e8f4 | Tadgh | 28 October 2021, 15:42:47 UTC | Fix longvarbinary (#3119) * Handle LONGVARBINARY * Add implementation and changelog * Add type | 28 October 2021, 15:42:47 UTC |
| 5f672bc | James Agnew | 28 October 2021, 11:55:46 UTC | Deprecate redundant BaseResourceModifiedMessage myId (#3116) * Deprecate redundant BaseResourceModifiedMessage myId * Add changelog * Test fix * Test fix | 28 October 2021, 11:55:46 UTC |
| 5ee823e | katiesmilecdr | 27 October 2021, 19:52:57 UTC | [3109] fix bug (#3112) * [3109] fix bug * [3109] add unit tests for BinaryAccessProvider | 27 October 2021, 19:52:57 UTC |
| e600663 | jamesagnew | 27 October 2021, 09:57:03 UTC | Credit for #2754 | 27 October 2021, 09:57:38 UTC |
| ccd0d10 | jamesagnew | 27 October 2021, 09:55:17 UTC | License header updates | 27 October 2021, 09:57:38 UTC |
| 2db1fe2 | tarekmamdouh | 27 October 2021, 09:54:52 UTC | Add support for generic types in synthetic classes such as weld proxies (#2589) (#2754) Co-authored-by: Tarek Ahmed <tarek.ahmed@agfa.com> | 27 October 2021, 09:54:52 UTC |
| e81ff9a | David | 27 October 2021, 09:53:16 UTC | Ensure all modules can be build with mvn clean install (#3114) | 27 October 2021, 09:53:16 UTC |
| 58071aa | jamesagnew | 26 October 2021, 20:50:10 UTC | Merge branch 'master' of github.com:jamesagnew/hapi-fhir | 26 October 2021, 20:50:10 UTC |
| 1792b74 | jamesagnew | 26 October 2021, 20:49:49 UTC | Inforporate version checks | 26 October 2021, 20:49:49 UTC |
| 9e05757 | James Agnew | 26 October 2021, 20:48:13 UTC | Allow multi-resource Subscription criteria (#3110) * Allow start criteria subscriptions * Rework subscription tests * Subscription cleanup * Add changelog * Test fixes * Test fix | 26 October 2021, 20:48:13 UTC |
| 2cf8e74 | michaelabuckley | 26 October 2021, 19:15:06 UTC | Introduce standard date search test cases (#3096) * Introduce standard date search test cases | 26 October 2021, 19:15:06 UTC |
| 20f31e4 | JasonRoberts-smile | 25 October 2021, 14:16:10 UTC | Jr 20211021 chained references 3 (#3107) * Create index entries for outbound references of contained resources * build query for chained reference * fix case where the contained reference is an explicit id rather than a continued chain * fix contained index to use path names not search param names * make qualified search work * cleanup and changelog * recurse while creating indexes on contained resources * double link both contained * longer contained subchains * adding some failing test cases to illustrate the limitations of qualified searches * clean up merge cruft * changelog * create recursive resource links * add test coverage for a more complicated case * changelog * remove unnecessary check for _contained flag * fix broken tests | 25 October 2021, 14:16:10 UTC |
| b267fdb | JasonRoberts-smile | 22 October 2021, 12:41:05 UTC | Jr 20211018 chained references 2 (#3099) * Create index entries for outbound references of contained resources * build query for chained reference * fix case where the contained reference is an explicit id rather than a continued chain * fix contained index to use path names not search param names * make qualified search work * cleanup and changelog * recurse while creating indexes on contained resources * double link both contained * longer contained subchains * adding some failing test cases to illustrate the limitations of qualified searches * clean up merge cruft * changelog | 22 October 2021, 12:41:05 UTC |
| d94284b | dependabot[bot] | 21 October 2021, 22:41:38 UTC | Bump wagon-scm from 3.0.0 to 3.4.3 (#3084) Bumps wagon-scm from 3.0.0 to 3.4.3. --- updated-dependencies: - dependency-name: org.apache.maven.wagon:wagon-scm dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 21 October 2021, 22:41:38 UTC |
| 2d55af1 | Tadgh | 21 October 2021, 20:23:41 UTC | Fix postgresql regression (#3101) * Bump elastic version * Fix broken types for sql builder in postgres * Add changelog * Fix changelog | 21 October 2021, 20:23:41 UTC |
| f98f3cd | michaelabuckley | 21 October 2021, 19:32:26 UTC | Extend ordinal date search to year and month precision (#3102) * added eq and gt test cases * added missing gt search param tests * added lt tests * Add some high-bound test cases * More test cases and new compressed format * More test cases * More test cases * Re-order columns for easier reading * Comments * Cleanup and comments * Fixed incomplete date issue * Set to the last millisecond 23:59:59.999 * Disabled 4 failed JVM/TZ related test cases * Added changelog Co-authored-by: Long Ma <longma@Longs-MacBook-Pro.local> Co-authored-by: Frank Tao <frankjtao@gmail.com> | 21 October 2021, 19:32:26 UTC |
| f3a8b8f | katiesmilecdr | 20 October 2021, 20:29:09 UTC | [3097] add doc (#3098) | 20 October 2021, 20:29:09 UTC |
| b93f33d | jmarchionatto | 20 October 2021, 15:05:04 UTC | When uploading loinc CodeSystem take copyright from loinc.xml input file. (#3092) Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> | 20 October 2021, 15:05:04 UTC |
| 3d68113 | Tadgh | 19 October 2021, 23:41:33 UTC | Add SearchBundleEntryParts (#3095) * Add the ability to parse a search bundle into its component parts * remove deadspace * wip | 19 October 2021, 23:41:33 UTC |
| d07764e | JasonRoberts-smile | 19 October 2021, 18:07:29 UTC | Jr 20211013 chained references (#3079) * Create index entries for outbound references of contained resources * build query for chained reference * fix case where the contained reference is an explicit id rather than a continued chain * fix contained index to use path names not search param names * make qualified search work * cleanup and changelog * code review * fix broken tests | 19 October 2021, 18:07:29 UTC |
| 34010fa | StevenXLi | 19 October 2021, 13:07:05 UTC | Batch job refactor (#3087) * added AbstractResourceToFileWriter * Added AbstractBaseBulkItemReader * added bulkExportStatusEnum fromBatchStatus test * Code review name change Co-authored-by: Long Ma <longma@Longs-MBP.hitronhub.home> Co-authored-by: Steven Li <steven@smilecdr.com> | 19 October 2021, 13:07:05 UTC |
| 92e9859 | jmarchionatto | 18 October 2021, 19:40:17 UTC | Issue 3072 using an external terminology server in the fhir server for codes in fhir resources (#3081) * Let RemoteTerminologyServiceValidationSupport.validateCodeInValueSet work when code system is present, even when theOptions.isInferSystem() is true * Add test for specific use case added * Consider ValueSets with multiple component includes * Fix typo Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> | 18 October 2021, 19:40:17 UTC |
| c89d122 | tom-daudelin-smilecdr | 18 October 2021, 16:37:51 UTC | added support for R4 profile validation alongside a passing test (#3074) Co-authored-by: tom <tom.daudelin@smilecdr> | 18 October 2021, 16:37:51 UTC |
| b5e31ab | JasonRoberts-smile | 18 October 2021, 12:21:26 UTC | add authorization check to inline matches (#3048) * add authorization check to inline matches * code review feedback: cached results case * Add query count test * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_6_0/3047-inline-match-security.yaml Accept code review suggestion Co-authored-by: James Agnew <jamesagnew@gmail.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> | 18 October 2021, 12:21:26 UTC |
| 5ba07e2 | dependabot[bot] | 17 October 2021, 22:03:09 UTC | Bump kotlin.version from 1.5.0 to 1.5.31 (#3083) Bumps `kotlin.version` from 1.5.0 to 1.5.31. Updates `kotlin-maven-allopen` from 1.5.0 to 1.5.31 Updates `kotlin-maven-noarg` from 1.5.0 to 1.5.31 Updates `kotlin-maven-plugin` from 1.5.0 to 1.5.31 --- updated-dependencies: - dependency-name: org.jetbrains.kotlin:kotlin-maven-allopen dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: org.jetbrains.kotlin:kotlin-maven-noarg dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: org.jetbrains.kotlin:kotlin-maven-plugin dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> | 17 October 2021, 22:03:09 UTC |
| bbcf202 | dependabot[bot] | 17 October 2021, 22:02:54 UTC | Bump jersey_version from 3.0.0 to 3.0.3 (#3027) Bumps `jersey_version` from 3.0.0 to 3.0.3. Updates `jersey-server` from 3.0.0 to 3.0.3 Updates `jersey-container-servlet-core` from 3.0.0 to 3.0.3 Updates `jersey-container-jetty-http` from 3.0.0 to 3.0.3 Updates `jersey-media-moxy` from 3.0.0 to 3.0.3 --- updated-dependencies: - dependency-name: org.glassfish.jersey.core:jersey-server dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: org.glassfish.jersey.containers:jersey-container-servlet-core dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: org.glassfish.jersey.containers:jersey-container-jetty-http dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: org.glassfish.jersey.media:jersey-media-moxy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> | 17 October 2021, 22:02:54 UTC |
| b427135 | Tadgh | 17 October 2021, 14:34:33 UTC | Patient/$everything _id parameter (#3077) * Add tests. Add implementation in R4. Add changelog * Wip partial fixup of other STU versions * Updated usages of new patient type everything api * Partial commit of incomplete documentation * Remove docs * Cut to token instead of string * Bump hapi version due to breaking api changes | 17 October 2021, 14:34:33 UTC |
| f6c8ecd | jamesagnew | 17 October 2021, 13:09:22 UTC | Credit for #3022 | 17 October 2021, 13:09:22 UTC |
| 2e5aed4 | Ben Li-Sauerwine | 17 October 2021, 13:06:31 UTC | Adds a NDJSON parser, in preparation for adding NDJSON $import to HAPI (#3022) * NDJsonParser with one example test. * Add test for empty NDJson, and fix bug for empty NDJson. * Adds multi-Patient test, and fixes bug whereby all multi-line NDJSON would be put into the same line. * Adds test for NDJson with newlines in it. * Adds test for converting non-Bundle types to NDJSON failing. * Confirm that we can only extract to Bundle types in test. * Update hapi-fhir-base/src/main/java/ca/uhn/fhir/context/FhirContext.java Co-authored-by: James Agnew <jamesagnew@gmail.com> * Documents behavior of the NDJsonParser in FhirContext. * Attempt to fix failing build by using TestUtil to clear context in the manner of r4 parser tests instead of dstu Also clean up indentation. Co-authored-by: James Agnew <jamesagnew@gmail.com> | 17 October 2021, 13:06:31 UTC |
| 721b181 | Thomas Vitale | 17 October 2021, 13:03:38 UTC | Add Systematic (Columna Cura) to HAPI FHIR Global Atlas (#3052) | 17 October 2021, 13:03:38 UTC |
| ec86ac4 | jamesagnew | 17 October 2021, 12:10:19 UTC | Merge branch 'master' of github.com:jamesagnew/hapi-fhir | 17 October 2021, 12:10:19 UTC |
| 7e87890 | dependabot[bot] | 17 October 2021, 11:01:33 UTC | Bump fhir_core_version from 5.5.4 to 5.5.7 (#3082) Bumps `fhir_core_version` from 5.5.4 to 5.5.7. Updates `org.hl7.fhir.utilities` from 5.5.4 to 5.5.7 Updates `org.hl7.fhir.convertors` from 5.5.4 to 5.5.7 Updates `org.hl7.fhir.validation` from 5.5.4 to 5.5.7 Updates `org.hl7.fhir.dstu2` from 5.5.4 to 5.5.7 Updates `org.hl7.fhir.dstu2016may` from 5.5.4 to 5.5.7 Updates `org.hl7.fhir.dstu3` from 5.5.4 to 5.5.7 Updates `org.hl7.fhir.r4` from 5.5.4 to 5.5.7 Updates `org.hl7.fhir.r4` from 5.5.4 to 5.5.7 Updates `org.hl7.fhir.r5` from 5.5.4 to 5.5.7 --- updated-dependencies: - dependency-name: ca.uhn.hapi.fhir:org.hl7.fhir.utilities dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: ca.uhn.hapi.fhir:org.hl7.fhir.convertors dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: ca.uhn.hapi.fhir:org.hl7.fhir.validation dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: ca.uhn.hapi.fhir:org.hl7.fhir.dstu2 dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: ca.uhn.hapi.fhir:org.hl7.fhir.dstu2016may dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: ca.uhn.hapi.fhir:org.hl7.fhir.dstu3 dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: ca.uhn.hapi.fhir:org.hl7.fhir.r4 dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: ca.uhn.hapi.fhir:org.hl7.fhir.r4:javadoc dependency-type: direct:production update-type: version-update:semver-patch - dependency-name: ca.uhn.hapi.fhir:org.hl7.fhir.r5 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> | 17 October 2021, 11:01:33 UTC |
| b9266df | Tadgh | 16 October 2021, 23:05:11 UTC | Add dependency to unbreak master build | 16 October 2021, 23:05:11 UTC |
| d416bc7 | jamesagnew | 16 October 2021, 22:34:08 UTC | Build fixes | 16 October 2021, 22:34:08 UTC |
| 41111ca | dependabot[bot] | 16 October 2021, 21:27:09 UTC | Bump maven-enforcer-plugin from 3.0.0-M2 to 3.0.0 (#3078) Bumps [maven-enforcer-plugin](https://github.com/apache/maven-enforcer) from 3.0.0-M2 to 3.0.0. - [Release notes](https://github.com/apache/maven-enforcer/releases) - [Commits](https://github.com/apache/maven-enforcer/compare/enforcer-3.0.0-M2...enforcer-3.0.0) --- updated-dependencies: - dependency-name: org.apache.maven.plugins:maven-enforcer-plugin dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 16 October 2021, 21:27:09 UTC |
| e1a0a59 | dependabot[bot] | 16 October 2021, 21:26:46 UTC | Bump maven-plugin-plugin from 3.5 to 3.6.0 (#1888) Bumps [maven-plugin-plugin](https://github.com/apache/maven-plugin-tools) from 3.5 to 3.6.0. - [Release notes](https://github.com/apache/maven-plugin-tools/releases) - [Commits](https://github.com/apache/maven-plugin-tools/compare/maven-plugin-tools-3.5...maven-plugin-tools-3.6.0) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 16 October 2021, 21:26:46 UTC |
| 120443e | Tadgh | 16 October 2021, 18:13:13 UTC | Bump core version (#3067) * Bump core version * Changes for version bump * Resolve NPE: * Test fix Co-authored-by: jamesagnew <jamesagnew@gmail.com> | 16 October 2021, 18:13:13 UTC |
| a0388db | dependabot[bot] | 15 October 2021, 10:28:33 UTC | Bump testcontainers_version from 1.15.3 to 1.16.0 (#3076) Bumps `testcontainers_version` from 1.15.3 to 1.16.0. Updates `testcontainers` from 1.15.3 to 1.16.0 - [Release notes](https://github.com/testcontainers/testcontainers-java/releases) - [Changelog](https://github.com/testcontainers/testcontainers-java/blob/master/CHANGELOG.md) - [Commits](https://github.com/testcontainers/testcontainers-java/compare/1.15.3...1.16.0) Updates `elasticsearch` from 1.15.3 to 1.16.0 - [Release notes](https://github.com/testcontainers/testcontainers-java/releases) - [Changelog](https://github.com/testcontainers/testcontainers-java/blob/master/CHANGELOG.md) - [Commits](https://github.com/testcontainers/testcontainers-java/compare/1.15.3...1.16.0) Updates `junit-jupiter` from 1.15.3 to 1.16.0 - [Release notes](https://github.com/testcontainers/testcontainers-java/releases) - [Changelog](https://github.com/testcontainers/testcontainers-java/blob/master/CHANGELOG.md) - [Commits](https://github.com/testcontainers/testcontainers-java/compare/1.15.3...1.16.0) --- updated-dependencies: - dependency-name: org.testcontainers:testcontainers dependency-type: direct:production update-type: version-update:semver-minor - dependency-name: org.testcontainers:elasticsearch dependency-type: direct:production update-type: version-update:semver-minor - dependency-name: org.testcontainers:junit-jupiter dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> | 15 October 2021, 10:28:33 UTC |
| 39c5c75 | jamesagnew | 14 October 2021, 20:44:49 UTC | Fix typo in root pom | 14 October 2021, 20:44:49 UTC |
| 1c8f364 | jamesagnew | 14 October 2021, 20:37:13 UTC | Credit for #3043 | 14 October 2021, 20:37:13 UTC |
| b25b186 | Jing Tang | 14 October 2021, 20:34:48 UTC | Remove the unused dependency on net.sf.saxon:Saxon-HE (#3043) * Remove the unused dependency on net.sf.saxon:Saxon-HE * Remove Saxon-HE dependency in hapi-fhir-jpaserver-base * Remove unused comment in hapi-fhir-structures-dstu2.1/pom.xml | 14 October 2021, 20:34:48 UTC |
| 05aa444 | jmarchionatto | 14 October 2021, 19:40:27 UTC | Let RemoteTerminologyServiceValidationSupport.validateCodeInValueSet … (#3073) * Let RemoteTerminologyServiceValidationSupport.validateCodeInValueSet work when code system is present, even when theOptions.isInferSystem() is true * Add test for specific use case added Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> | 14 October 2021, 19:40:27 UTC |
| 87e594d | Tadgh | 13 October 2021, 20:17:43 UTC | Bump JENA to deal with CVE-2021-29349 (#3063) | 13 October 2021, 20:17:43 UTC |
| 818c54f | jamesagnew | 12 October 2021, 16:01:34 UTC | Squashed commit of the following: commit 408f2d82b762900de53ebe66dde8eec082e7bae7 Merge: 8da38d1a9e be19acb7c3 Author: jamesagnew <jamesagnew@gmail.com> Date: Tue Oct 12 12:00:56 2021 -0400 Merge branch 'master' into ja_20211011_fix_intermittent commit 8da38d1a9eb6a07601721f8143cf544fbb9e9a63 Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Oct 11 21:31:42 2021 -0400 Test fixes commit c73fd288f00855178c3bd31567c56c3fbc62e513 Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Oct 11 20:53:04 2021 -0400 Fix intermittent failure | 12 October 2021, 16:01:34 UTC |
| be19acb | jamesagnew | 12 October 2021, 16:00:21 UTC | Fix Postgres migration | 12 October 2021, 16:00:39 UTC |
| d2ea465 | Tadgh | 12 October 2021, 14:25:03 UTC | Rel 5 5 2 (#3060) * Add versionenum, bump maven version * failing tests * more logs * Add more test cases, not passing * fixed the double chain with contained resource second case * clean up a bit * add tests for qualifiers * force the resource table to be the root of the query if we might be traversing a contained reference * tidy up * tests for longer chains * changelog * code review feedback * backport changelog * Add version.yaml * [2935] Escape "%" in like expression * Add backport to changelog Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Jason Roberts <jason.roberts@smilecdr.com> Co-authored-by: katie_smilecdr <katie@smilecdr.com> | 12 October 2021, 14:25:03 UTC |
| b2a4ff2 | jamesagnew | 11 October 2021, 23:14:01 UTC | Try to avoid intermittent | 11 October 2021, 23:14:01 UTC |
| 56ef55a | jamesagnew | 11 October 2021, 21:44:11 UTC | Update postgres schema file name | 11 October 2021, 21:44:11 UTC |
| bc0f5d4 | jamesagnew | 11 October 2021, 21:28:07 UTC | Avoid intermittent failure | 11 October 2021, 21:28:07 UTC |
| a54ebd1 | jamesagnew | 11 October 2021, 21:22:54 UTC | License header updates | 11 October 2021, 21:22:54 UTC |
| 310a4cd | James Agnew | 11 October 2021, 20:47:37 UTC | Migrate CLOB columns to LOB (SMILE-3072) (#3016) * Migration finished * Work on LOBS * Add to ClobMigrated annotation * Deal with lobs * Work on new approach * HAPI FHIR version bump * Add changelog * Add license header * Fix intermittent * CLeanup * Cleanup | 11 October 2021, 20:47:37 UTC |
| 756b0fd | James Agnew | 11 October 2021, 20:45:22 UTC | Fix transaction scoping (#2799) * Work on transaction boundaries * Test fixes * Test fixes * Test fix * Resolve FIXME * Test fix * Test fix * Test fix * Test fixes * Test fix * Adjust changelog * Remove unneeded changelog * Test fix * Test fixes * Test fixes * Test fixes * Test fixes * Test fix * Fixes * Test fix | 11 October 2021, 20:45:22 UTC |
| aed718b | James Agnew | 11 October 2021, 17:45:57 UTC | Avoid redundant PID lookups in transaction processing (#3061) * Avoid redundant PID lookups in transaction processing * Add changelog * Test fix | 11 October 2021, 17:45:57 UTC |
| 6ad0dff | TipzCM | 07 October 2021, 20:38:42 UTC | build fix (#3058) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> | 07 October 2021, 20:38:42 UTC |
| 383f769 | Tadgh | 07 October 2021, 19:12:18 UTC | Fix broken link in yaml | 07 October 2021, 19:12:18 UTC |
| 3c80dba | katiesmilecdr | 07 October 2021, 17:42:21 UTC | [3040] finish implementation (#3049) * [3040] finish implementation * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md Co-authored-by: Tadgh <tadgh@cs.toronto.edu> * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md Co-authored-by: Tadgh <tadgh@cs.toronto.edu> * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_operations.md Co-authored-by: Tadgh <tadgh@cs.toronto.edu> * [3040] throw exception if link exists * [3040] add matchResult parameter/update documentation Co-authored-by: Tadgh <tadgh@cs.toronto.edu> | 07 October 2021, 17:42:21 UTC |
| a474e88 | TipzCM | 07 October 2021, 14:46:23 UTC | issue-2397 implementing the mdm expansion on everything and searches (#3044) * issue-2397 implementing the mdm expansion on everything and searches * issue-2397 code cleanup and removal of test code * issue-2397 some tests * issue-2397 changelog added * issue-2397 review fixes * issue-2397 updated change log with example and fixed failing tests * issue-2397 test fixing * issue-2397 fixing test * issue-2397 review fix * issue 2397 fixing changelog file Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: Tadgh <tadgh@cs.toronto.edu> | 07 October 2021, 14:46:23 UTC |
| 71e2b82 | jmarchionatto | 06 October 2021, 20:56:30 UTC | Issue 2851 upload terminology valueset parallel versioning (#3051) * Fix operations for 'loinc-all' ValueSet * Fix tests Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> | 06 October 2021, 20:56:30 UTC |
| bc2cd7c | Tadgh | 06 October 2021, 14:44:39 UTC | premature optimization is the root of all evil (#3053) | 06 October 2021, 14:44:39 UTC |
| 59afbe0 | Tadgh | 05 October 2021, 15:09:49 UTC | Allow canonical references to support treating given base URLs as local. (#3050) * Add failling test, works on #2843 * Partial hack to get this working * Move implementation into pre-processing * Add changelog * Move implementation * Minify Test * Remove fixmes * Tidying * Ensure this only operates on STU versions which support canonical | 05 October 2021, 15:09:49 UTC |
| 2581cd1 | jamesagnew | 04 October 2021, 14:54:33 UTC | Bump postgres DB version | 04 October 2021, 14:54:33 UTC |
| 15748f4 | jamesagnew | 04 October 2021, 11:41:24 UTC | Add setters | 04 October 2021, 11:41:24 UTC |
| d320b78 | James Agnew | 04 October 2021, 09:46:06 UTC | Improve synthea ingest performance (#3033) * Improve synthea ingest performance * Tweaks * Fix param splitting * Update to test * Add changelog * Test fix * Add some runtime checks * Remove useless test * Test fix | 04 October 2021, 09:46:06 UTC |
| d4f01ac | jamesagnew | 04 October 2021, 00:20:04 UTC | License header updates | 04 October 2021, 00:20:04 UTC |
| eca725a | James Agnew | 03 October 2021, 23:47:23 UTC | Improve versioned URL support for ValueSet expansion (#2994) * Add test * Test fixes * Work on expansion errors * Fixes * Test fixes * Test fixes * Test fixes * Test fixes * Test fixes * Test fixes * Test fixes * Work on fix * Test fixes * Test fixes * Test fix * Cleanup * Test fixes * Remove accidental commit * Test fixes * Version bump * Add changelog * Fixes * Test fix * Fix conflicts | 03 October 2021, 23:47:23 UTC |
| 95e853b | James Agnew | 03 October 2021, 23:40:24 UTC | Improve parallel model scanning (#3046) * Improve parallel model scanning * Add changelog * Resolve fixme * Test fix | 03 October 2021, 23:40:24 UTC |
| 53a2d3c | Tadgh | 28 September 2021, 21:56:12 UTC | Merge pull request #3038 from hapifhir/remove-parallel-non-gets Remove parallel non gets | 28 September 2021, 21:56:12 UTC |
| 63ef58c | Tadgh | 28 September 2021, 20:43:36 UTC | Merge branch 'remove-parallel-non-gets' of github.com:hapifhir/hapi-fhir into remove-parallel-non-gets | 28 September 2021, 20:43:36 UTC |
| 040d09c | Tadgh | 28 September 2021, 20:43:29 UTC | Remvoe error in moving code over | 28 September 2021, 20:43:29 UTC |
| 6f36a0a | Tadgh | 28 September 2021, 14:17:38 UTC | Merge branch 'master' into remove-parallel-non-gets | 28 September 2021, 14:17:38 UTC |
| cd1a415 | Tadgh | 28 September 2021, 13:55:13 UTC | Merge branch 'remove-parallel-non-gets' of github.com:hapifhir/hapi-fhir into remove-parallel-non-gets | 28 September 2021, 13:55:13 UTC |
| 072c030 | Tadgh | 28 September 2021, 13:55:06 UTC | Remove modifications, defaults work | 28 September 2021, 13:55:06 UTC |
| e99c470 | JasonRoberts-smile | 28 September 2021, 13:54:50 UTC | Merge pull request #3023 from hapifhir/jr-20210922-narrowing-interceptor Jr 20210922 narrowing interceptor | 28 September 2021, 13:54:50 UTC |
| ad05a5e | Tadgh | 28 September 2021, 13:43:01 UTC | Merge branch 'master' into remove-parallel-non-gets | 28 September 2021, 13:43:01 UTC |
| 39ae66d | Jason Roberts | 28 September 2021, 12:35:04 UTC | Add tests for invalid inputs | 28 September 2021, 12:35:04 UTC |
| 58a2f23 | Jason Roberts | 28 September 2021, 11:41:39 UTC | Merge branch 'master' into jr-20210922-narrowing-interceptor | 28 September 2021, 11:41:39 UTC |
| 2a86b72 | Tadgh | 27 September 2021, 20:41:50 UTC | Merge pull request #3021 from hapifhir/3020_Add_documentation_for_$partition-management-create-partition [3020] add documentation for $partition-management-read-partition | 27 September 2021, 20:41:50 UTC |
| 591286a | Tadgh | 27 September 2021, 19:37:59 UTC | Add changelog | 27 September 2021, 19:37:59 UTC |
| dde0529 | Tadgh | 27 September 2021, 19:36:17 UTC | Remove extra semicolon | 27 September 2021, 19:36:17 UTC |
| 0c12338 | Tadgh | 13 September 2021, 23:52:44 UTC | add test for failing batch bug, remove bounding on queue | 27 September 2021, 19:34:19 UTC |
| 7dfe628 | Tadgh | 14 September 2021, 16:29:43 UTC | remove parallelism from non-get batch operations | 27 September 2021, 19:32:03 UTC |
| d121f6e | katie_smilecdr | 27 September 2021, 19:10:19 UTC | Merge branch 'master' into 3020_Add_documentation_for_$partition-management-create-partition | 27 September 2021, 19:10:19 UTC |
| b86f596 | katie_smilecdr | 27 September 2021, 19:09:44 UTC | [3020] add sample response in documentation | 27 September 2021, 19:09:44 UTC |
| bc93403 | jmarchionatto | 27 September 2021, 19:05:57 UTC | Merge pull request #3036 from hapifhir/issue-2851-upload-terminology-valueset-parallel-versioning Issue 2851 upload terminology valueset parallel versioning | 27 September 2021, 19:05:57 UTC |
| 2dec5f0 | juan.marchionatto | 27 September 2021, 17:47:23 UTC | Add explicit brackets | 27 September 2021, 17:47:23 UTC |
| b4343a9 | juan.marchionatto | 27 September 2021, 13:48:15 UTC | Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning | 27 September 2021, 13:48:15 UTC |
| 00ceb3f | juan.marchionatto | 27 September 2021, 13:47:05 UTC | Add tests | 27 September 2021, 13:47:05 UTC |
| 1a446d6 | michaelabuckley | 25 September 2021, 00:23:00 UTC | Merge pull request #3035 from hapifhir/mb-fix-NoFt-tests Make our NoFt tests actually run without Ft. | 25 September 2021, 00:23:00 UTC |
| bd2af62 | Michael Buckley | 24 September 2021, 22:19:46 UTC | checkstyle - fixme | 24 September 2021, 22:19:46 UTC |
| c5cacac | katie_smilecdr | 24 September 2021, 20:55:03 UTC | [3020] fix changelog | 24 September 2021, 20:55:03 UTC |
| 5ee5b08 | michaelabuckley | 24 September 2021, 20:38:05 UTC | Merge branch 'master' into mb-fix-NoFt-tests | 24 September 2021, 20:38:05 UTC |
