Revision 1234efc247775f69f0dca88f1506bccc5e0d3f61 authored by Chase W. Nelson on 17 September 2020, 09:16:27 UTC, committed by Chase W. Nelson on 17 September 2020, 09:16:27 UTC
Added SNPGenie reference; formatted examples as full Shell code blocks
1 parent 4fbf1d9
History
File Mode Size
.gitattributes -rw-r--r-- 66 bytes
ORF_length.R -rw-r--r-- 9.0 KB
ORF_length_heatmap_data.tsv -rw-r--r-- 2.5 MB
README.md -rw-r--r-- 18.4 KB
SARS-related-CoV_ALN.gtf -rw-r--r-- 1.2 KB
aligned_fasta2haplotypes.pl -rwxr-xr-x 10.9 KB
extract_fasta_by_sites.pl -rwxr-xr-x 8.0 KB
extract_seq_subset.py -rwxr-xr-x 2.3 KB
filter_VCF.py -rwxr-xr-x 10.4 KB
frameshift_results.txt -rw-r--r-- 9.2 KB
generate_random_protein.py -rwxr-xr-x 2.8 KB
generate_seqs_from_VCF.py -rwxr-xr-x 7.8 KB
riboseq_sliding_window.R -rw-r--r-- 8.1 KB
summarize_intrahost_by_site.py -rwxr-xr-x 26.0 KB
tally_epitope_coverage.py -rwxr-xr-x 3.1 KB
translate_nt_seq_file.pl -rwxr-xr-x 6.1 KB

README.md

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