Revision 1234efc247775f69f0dca88f1506bccc5e0d3f61 authored by Chase W. Nelson on 17 September 2020, 09:16:27 UTC, committed by Chase W. Nelson on 17 September 2020, 09:16:27 UTC
Added SNPGenie reference; formatted examples as full Shell code blocks
1 parent 4fbf1d9
| File | Mode | Size |
|---|---|---|
| .gitattributes | -rw-r--r-- | 66 bytes |
| ORF_length.R | -rw-r--r-- | 9.0 KB |
| ORF_length_heatmap_data.tsv | -rw-r--r-- | 2.5 MB |
| README.md | -rw-r--r-- | 18.4 KB |
| SARS-related-CoV_ALN.gtf | -rw-r--r-- | 1.2 KB |
| aligned_fasta2haplotypes.pl | -rwxr-xr-x | 10.9 KB |
| extract_fasta_by_sites.pl | -rwxr-xr-x | 8.0 KB |
| extract_seq_subset.py | -rwxr-xr-x | 2.3 KB |
| filter_VCF.py | -rwxr-xr-x | 10.4 KB |
| frameshift_results.txt | -rw-r--r-- | 9.2 KB |
| generate_random_protein.py | -rwxr-xr-x | 2.8 KB |
| generate_seqs_from_VCF.py | -rwxr-xr-x | 7.8 KB |
| riboseq_sliding_window.R | -rw-r--r-- | 8.1 KB |
| summarize_intrahost_by_site.py | -rwxr-xr-x | 26.0 KB |
| tally_epitope_coverage.py | -rwxr-xr-x | 3.1 KB |
| translate_nt_seq_file.pl | -rwxr-xr-x | 6.1 KB |
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