// Style for rice data, based on game.style
ImportStyle "game.style" 

// The name of the types file (a file--expected to be in the user's ~/.apollo directory
// or in the APOLLO_ROOT/conf directory)
Types		        "rice.tiers"

// Organism to use when writing out ChadoXML (if not already specified
// for the individual feature)
Organism                "Oryza sativa"

NameAdapterInstall "apollo.config.RiceNameAdapter"

// Whether to enable the navigation manager, default false.
EnableNavigationManager "false"

// List of chromosomes for pulldown menu in navigation bar and load-by-location 
// data adapter. data adapter gets this from chado-adapter.xml config. navigation
// is not yet enabled. rice chado only chrom 1 at this point.
// Chromosomes             "1, 2, 3, 4"

// Whether to show the genes ID field in the annot info editor. default true.
ShowIdField  "false"

// Whether the transcript symbol should be editable in annotinfo. default true
TranscriptSymbolEditable "false"

// Whether to show the "Is Dicsitronic?" checkbox in annot info
ShowIsDicistronicAnnotInfoCheckbox "false"

// Whether to show the "Evauluation of Peptide" drop down list. This is more or less
// a flybase specific dropdown list, where a peptide analysis program was run and the
// curator could pick from the results (or something like that)       
// also whether to show associated menu item in annotation menu
//ShowEvaluationOfPeptideAnnotInfoList "false"
ShowEvaluationOfPeptide "false"

// Whether to display/use the isProblematic checkbox in annot info editor
ShowIsProblematicAnnotInfoCheckbox "false"

// Whether to display/use the "Finished?" checkbox in annot info
// transcript panel. Indicates work on that transcript is done I think.
ShowFinishedAnnotInfoCheckbox "false"

// Show table in annot info that displays database cross references
// for the annotation, that can potentially bring up web pages
ShowDBCrossRefAnnotInfoTable "false"

// Show "Replace stop codon with selenocysteine" checkbox in annot info
ShowReplaceStopAnnotInfoCheckbox "false"

// allow for translational frame shift editing in the exon detail editor
// which also get displayed in the annot info editor. default is "true"
EnableTranslationalFrameShiftEditing "false"

// Allow for sequence error editing in exon detail editor, which also displays in
// annot info editor. Default is "true".
EnableSequenceErrorEditing "false"

// Whether to show/use ownership menu item in annot menu for disowning
// & owning annots. default is true.
ShowOwnershipAnnotMenuItem "false"

// Whether to show/use annot menu item for setting transcript
// finished/unfinished - default is true
ShowTranscriptFinishedAnnotMenuItem "false"

// Be sure that the last line of this file ends with a newline.