https://github.com/mapequation/bioregions

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Revision Author Date Message Commit Date
12af8ff fix: Shapefile binning resolution, fixes #55 07 June 2023, 20:03:08 UTC
828d214 fix: Update old d3 code in export to avoid error 01 June 2023, 15:02:09 UTC
6af6e31 fix: Improve shapefile binning resolution 27 May 2023, 09:18:26 UTC
8f4c698 refactor: Update deps, major work on d3 v3 to v7 27 May 2023, 09:16:12 UTC
d7edfb3 feat: Add option to weight network on abundance 13 May 2022, 08:11:03 UTC
558b6ae chore(deps): Update Infomap 07 March 2022, 21:47:26 UTC
f48e141 fix: Revert update of shp-write dependency Fixes #34 07 March 2022, 17:24:23 UTC
7c6cc68 fix: Remove gap in cluster ids if no grid cells Fixes export error 07 March 2022, 17:12:47 UTC
4f3272c Fix last fix Fixes #48 12 February 2022, 00:32:26 UTC
39b690d fix: Don't add one link per record Fixes #48 12 February 2022, 00:19:50 UTC
2405739 refactor: Replace webpack with react-scripts 11 February 2022, 21:33:51 UTC
55bfec1 wip: Update dependencies 11 February 2022, 20:00:47 UTC
0bfb3c8 Add notice with link to next version 28 January 2022, 09:34:06 UTC
86a53d4 wip: Replace Infomap args string with object 02 September 2021, 11:31:57 UTC
577da66 Add option to color by species richness 02 September 2021, 10:09:25 UTC
38e3e44 refactor: Use new Infomap from npm 02 September 2021, 10:03:53 UTC
5994acb build: Move maps data to public 02 September 2021, 08:46:57 UTC
fb67bff Add option to set bioregion opacity by records 10 May 2021, 23:56:57 UTC
57a1477 Fix Safari bug on clustering 08 June 2020, 07:50:24 UTC
204f473 Fix domain issue 13 May 2020, 20:06:19 UTC
d700e02 Fix missing jquery for old semantic ui 13 May 2020, 20:05:30 UTC
9ced9f3 Fix missing constant 20 April 2020, 11:29:58 UTC
17e518f Fix shapefile output to show bioregions in QGIS Fixes #34 21 January 2020, 00:13:37 UTC
cd754d2 Reset test domain 09 October 2019, 20:34:32 UTC
fc206cd Decrease Markov time step size to 0.01 09 October 2019, 20:32:03 UTC
50a6c31 Merge branch 'develop' into feature/minute-resolution 07 October 2019, 16:09:43 UTC
5b60059 Merge branch 'develop' into feature/phyloregions 07 October 2019, 16:09:19 UTC
8580e16 Implement some test models for phyloregions clustering 07 October 2019, 16:02:06 UTC
0bcd0c9 Use own domain for testing online 07 October 2019, 15:55:38 UTC
ef4da04 Merge branch 'feature/phyloregions' into develop 07 October 2019, 15:10:51 UTC
675805f Fix loading Infomap worker from new public url 02 June 2019, 22:02:20 UTC
a7b5ee8 Fix use NODE_ENV production in production build 02 June 2019, 20:42:49 UTC
9c2f65b New homepage and use https for all resources 02 June 2019, 20:28:37 UTC
c0db79b Fix clamping visible cells that cross long +-180 or lat +-90 30 April 2019, 13:51:25 UTC
c6503e7 Replace underscores in species names with spaces, as in tree. 30 April 2019, 09:30:10 UTC
3e302e5 Strip possible quote characters wrapping names in trees 30 April 2019, 09:11:31 UTC
2fe4eae Add option to switch from degree to minute resolution 30 April 2019, 06:50:55 UTC
fafe9de Fix highlight performance and highlight info tab if not active Use mobx instead of redux for fast re-rendering of only affected components on mouse over / highlight events. 31 May 2018, 09:45:09 UTC
96e6bbd Add choice of cell or region level statistics on mouse over/click 22 April 2018, 21:36:13 UTC
40a6c81 Move cell tooltip to new info panel 21 April 2018, 13:57:20 UTC
92d0508 Encode only similarity on grid cell click to not mix with density 12 April 2018, 12:07:05 UTC
739c453 Calculate area in km2 instead of square degrees - Use log scale on count/area in choropleth map 12 April 2018, 11:25:00 UTC
1436f41 Utilise new species to cell datastructure when generating network 07 April 2018, 09:01:20 UTC
ec3eb2e Highlight similar cells on click based on bipartite network Calculate similarity as the pattern generated by taking all possible two-step jumps from the selected cell on the bipartite network. 06 April 2018, 14:24:54 UTC
14c3670 Merge branch 'develop' into feature/cell-similarity 05 April 2018, 15:58:48 UTC
9e47970 Fix not reset zoom on map redraw 05 April 2018, 15:58:28 UTC
79dc5c4 Highlight similar grid cells on click, based on Jaccard index 05 April 2018, 15:27:19 UTC
57a9636 Fix bipartite node index offset in exported network 04 April 2018, 13:47:10 UTC
a3289d4 Simplify upgrade by removing native node-sass module 04 April 2018, 13:05:08 UTC
2bcf091 Import multipolygons 10 times faster with custom bbox calculation 04 April 2018, 12:50:04 UTC
f2389f1 Fix don't limit indicator species to list of top common species 29 March 2018, 08:43:31 UTC
9edeb02 Update "How to cite" with relevant paper references 29 March 2018, 08:39:44 UTC
e2f0cce Merge branch 'feature/streaming-input' into develop 19 February 2018, 21:04:26 UTC
4ec4b2c Update jquery/semantic-ui 19 February 2018, 17:24:22 UTC
8637389 Update semantic-ui 18 February 2018, 21:58:12 UTC
0b25ed5 Simplify shapefile geometry while loading to handle big files 18 February 2018, 21:48:27 UTC
42142d1 Patch sparse nodes by default again but include a toggle Also catch and display general errors 07 April 2017, 11:21:08 UTC
2ecdaaf Update links to paper 28 March 2017, 17:31:06 UTC
7533c40 Export bipartite network 13 March 2017, 13:28:23 UTC
22ce090 Merge branch 'fix/overlapping-cells' into develop 13 March 2017, 11:04:49 UTC
d710c4a Fix link to thumbnail image for article 22 August 2016, 17:33:05 UTC
33bb16b Skip patch parent cell if empty sub-cells created 29 July 2016, 16:19:46 UTC
ad157dd More 'unique species' -> 'species' 27 May 2016, 11:34:08 UTC
105a5fe Use Fitch's parsimony on example phylogram in docs 27 May 2016, 11:26:31 UTC
8823c9a In summary tables, 'unique species' -> 'species' 27 May 2016, 11:04:01 UTC
439868a Use own nexus parser to fix translations 23 May 2016, 13:35:28 UTC
f0f77a2 Merge branch 'develop' into fix/nexus-parsing 23 May 2016, 12:14:24 UTC
82c87cf Fix pie chart tooltip name offset and style 23 May 2016, 12:08:23 UTC
f044c77 Add tooltip on pie charts in bioregions tables 23 May 2016, 06:33:14 UTC
e8b5410 Fix use max. parsimony also when loading tree first 23 May 2016, 06:02:20 UTC
0159622 WIP: new nexus parsing 23 May 2016, 05:39:48 UTC
4d93ff2 Fix init with count 1 for max parsimony 22 May 2016, 19:35:53 UTC
92d8179 Update tree files, cleaned non-branching nodes 19 May 2016, 04:23:59 UTC
733af49 Fix normalize species name when prepare tree 19 May 2016, 04:12:28 UTC
778afbc Add pending test to prune non-branching nodes 19 May 2016, 03:59:52 UTC
911d24f Implement and test Fitch's maximum parsimony 19 May 2016, 03:51:39 UTC
e33da08 No infinite loop if missing ; in tree file 19 May 2016, 03:51:01 UTC
84f93e1 Don't log nexus tree comments in console 19 May 2016, 00:13:13 UTC
cc9418d Test reconstruct areas from tree 18 May 2016, 23:10:46 UTC
d53684e Support extended Newick format (with states from BayArea) 16 May 2016, 14:35:24 UTC
06ae2a9 cli: calculate max branch length 16 May 2016, 02:34:31 UTC
719ca60 Simplify tree by removing chains 16 May 2016, 01:49:11 UTC
7880a73 cli: prune distribution data to tree species 15 May 2016, 23:59:06 UTC
00af6f6 Export bioregion coordinates 15 May 2016, 21:37:19 UTC
7b9f396 Export species presence-absence in bioregions 15 May 2016, 20:42:35 UTC
80e6e54 Merge branch 'develop' into feature/phylogram 15 May 2016, 17:17:59 UTC
81910c3 Fix sort tree by bioregions for missing species 08 May 2016, 23:17:59 UTC
d043f12 Fix tree zoom 08 May 2016, 12:26:43 UTC
cf45fa2 Split sort and limit tree, add sort by bioregions 06 May 2016, 10:16:37 UTC
05481d2 No stroke on tree labels 05 May 2016, 16:50:01 UTC
a239e69 Don't adjust min/max to valid step size in TangleInput 05 May 2016, 15:26:56 UTC
0e3dfac Fix limit leaf count bug and add tree preparation test 05 May 2016, 15:10:14 UTC
60f898c Fix print JSON result for cli tool 02 May 2016, 03:38:50 UTC
5b81140 Fix default black fill color on labels 02 May 2016, 03:33:11 UTC
05bc1cb Fix missing import for cli tool 02 May 2016, 02:53:27 UTC
2d251c8 Color unclustered tree by leaf/occurrence count 02 May 2016, 02:42:40 UTC
422dac6 Don't render map/tree table if no map 02 May 2016, 00:28:37 UTC
42c847c Show tree minimap and stats 01 May 2016, 23:32:38 UTC
1a5b5ee Fix reset clusters on tree with new data 01 May 2016, 10:49:32 UTC
e5d318a Fix set clusters to limited tree 01 May 2016, 10:17:20 UTC
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