12af8ff | Daniel Edler | 07 June 2023, 20:02:45 UTC | fix: Shapefile binning resolution, fixes #55 | 07 June 2023, 20:03:08 UTC |
828d214 | Daniel Edler | 01 June 2023, 15:02:09 UTC | fix: Update old d3 code in export to avoid error | 01 June 2023, 15:02:09 UTC |
6af6e31 | Daniel Edler | 27 May 2023, 09:17:16 UTC | fix: Improve shapefile binning resolution | 27 May 2023, 09:18:26 UTC |
8f4c698 | Daniel Edler | 27 May 2023, 09:16:12 UTC | refactor: Update deps, major work on d3 v3 to v7 | 27 May 2023, 09:16:12 UTC |
d7edfb3 | Daniel Edler | 13 May 2022, 08:11:03 UTC | feat: Add option to weight network on abundance | 13 May 2022, 08:11:03 UTC |
558b6ae | Daniel Edler | 07 March 2022, 21:47:26 UTC | chore(deps): Update Infomap | 07 March 2022, 21:47:26 UTC |
f48e141 | Daniel Edler | 07 March 2022, 17:24:23 UTC | fix: Revert update of shp-write dependency Fixes #34 | 07 March 2022, 17:24:23 UTC |
7c6cc68 | Daniel Edler | 07 March 2022, 17:12:47 UTC | fix: Remove gap in cluster ids if no grid cells Fixes export error | 07 March 2022, 17:12:47 UTC |
4f3272c | Daniel Edler | 12 February 2022, 00:32:26 UTC | Fix last fix Fixes #48 | 12 February 2022, 00:32:26 UTC |
39b690d | Daniel Edler | 12 February 2022, 00:19:50 UTC | fix: Don't add one link per record Fixes #48 | 12 February 2022, 00:19:50 UTC |
2405739 | Daniel Edler | 11 February 2022, 21:30:07 UTC | refactor: Replace webpack with react-scripts | 11 February 2022, 21:33:51 UTC |
55bfec1 | Daniel Edler | 11 February 2022, 20:00:47 UTC | wip: Update dependencies | 11 February 2022, 20:00:47 UTC |
0bfb3c8 | Daniel Edler | 28 January 2022, 09:34:06 UTC | Add notice with link to next version | 28 January 2022, 09:34:06 UTC |
86a53d4 | Daniel Edler | 02 September 2021, 11:31:57 UTC | wip: Replace Infomap args string with object | 02 September 2021, 11:31:57 UTC |
577da66 | Daniel Edler | 11 May 2021, 02:12:00 UTC | Add option to color by species richness | 02 September 2021, 10:09:25 UTC |
38e3e44 | Daniel Edler | 02 September 2021, 10:03:53 UTC | refactor: Use new Infomap from npm | 02 September 2021, 10:03:53 UTC |
5994acb | Daniel Edler | 02 September 2021, 08:46:48 UTC | build: Move maps data to public | 02 September 2021, 08:46:57 UTC |
fb67bff | Daniel Edler | 10 May 2021, 23:56:57 UTC | Add option to set bioregion opacity by records | 10 May 2021, 23:56:57 UTC |
57a1477 | Daniel Edler | 08 June 2020, 07:50:24 UTC | Fix Safari bug on clustering | 08 June 2020, 07:50:24 UTC |
204f473 | Daniel Edler | 13 May 2020, 20:06:19 UTC | Fix domain issue | 13 May 2020, 20:06:19 UTC |
d700e02 | Daniel Edler | 13 May 2020, 20:05:30 UTC | Fix missing jquery for old semantic ui | 13 May 2020, 20:05:30 UTC |
9ced9f3 | Daniel Edler | 20 April 2020, 11:29:58 UTC | Fix missing constant | 20 April 2020, 11:29:58 UTC |
17e518f | Daniel Edler | 21 January 2020, 00:13:37 UTC | Fix shapefile output to show bioregions in QGIS Fixes #34 | 21 January 2020, 00:13:37 UTC |
cd754d2 | Daniel Edler | 09 October 2019, 20:34:32 UTC | Reset test domain | 09 October 2019, 20:34:32 UTC |
fc206cd | Daniel Edler | 09 October 2019, 20:32:03 UTC | Decrease Markov time step size to 0.01 | 09 October 2019, 20:32:03 UTC |
50a6c31 | Daniel Edler | 07 October 2019, 16:09:43 UTC | Merge branch 'develop' into feature/minute-resolution | 07 October 2019, 16:09:43 UTC |
5b60059 | Daniel Edler | 07 October 2019, 16:09:19 UTC | Merge branch 'develop' into feature/phyloregions | 07 October 2019, 16:09:19 UTC |
8580e16 | Daniel Edler | 07 October 2019, 16:02:06 UTC | Implement some test models for phyloregions clustering | 07 October 2019, 16:02:06 UTC |
0bcd0c9 | Daniel Edler | 07 October 2019, 15:12:39 UTC | Use own domain for testing online | 07 October 2019, 15:55:38 UTC |
ef4da04 | Daniel Edler | 07 October 2019, 15:10:51 UTC | Merge branch 'feature/phyloregions' into develop | 07 October 2019, 15:10:51 UTC |
675805f | Daniel Edler | 02 June 2019, 22:02:20 UTC | Fix loading Infomap worker from new public url | 02 June 2019, 22:02:20 UTC |
a7b5ee8 | Daniel Edler | 02 June 2019, 20:42:49 UTC | Fix use NODE_ENV production in production build | 02 June 2019, 20:42:49 UTC |
9c2f65b | Daniel Edler | 02 June 2019, 20:28:37 UTC | New homepage and use https for all resources | 02 June 2019, 20:28:37 UTC |
c0db79b | Daniel Edler | 30 April 2019, 13:51:25 UTC | Fix clamping visible cells that cross long +-180 or lat +-90 | 30 April 2019, 13:51:25 UTC |
c6503e7 | Daniel Edler | 30 April 2019, 09:30:10 UTC | Replace underscores in species names with spaces, as in tree. | 30 April 2019, 09:30:10 UTC |
3e302e5 | Daniel Edler | 30 April 2019, 09:11:31 UTC | Strip possible quote characters wrapping names in trees | 30 April 2019, 09:11:31 UTC |
2fe4eae | Daniel Edler | 30 April 2019, 06:50:55 UTC | Add option to switch from degree to minute resolution | 30 April 2019, 06:50:55 UTC |
fafe9de | Daniel Edler | 31 May 2018, 09:45:09 UTC | Fix highlight performance and highlight info tab if not active Use mobx instead of redux for fast re-rendering of only affected components on mouse over / highlight events. | 31 May 2018, 09:45:09 UTC |
96e6bbd | Daniel Edler | 22 April 2018, 21:36:13 UTC | Add choice of cell or region level statistics on mouse over/click | 22 April 2018, 21:36:13 UTC |
40a6c81 | Daniel Edler | 21 April 2018, 13:57:20 UTC | Move cell tooltip to new info panel | 21 April 2018, 13:57:20 UTC |
92d0508 | Daniel Edler | 12 April 2018, 12:07:05 UTC | Encode only similarity on grid cell click to not mix with density | 12 April 2018, 12:07:05 UTC |
739c453 | Daniel Edler | 12 April 2018, 11:25:00 UTC | Calculate area in km2 instead of square degrees - Use log scale on count/area in choropleth map | 12 April 2018, 11:25:00 UTC |
1436f41 | Daniel Edler | 07 April 2018, 09:01:20 UTC | Utilise new species to cell datastructure when generating network | 07 April 2018, 09:01:20 UTC |
ec3eb2e | Daniel Edler | 06 April 2018, 14:24:54 UTC | Highlight similar cells on click based on bipartite network Calculate similarity as the pattern generated by taking all possible two-step jumps from the selected cell on the bipartite network. | 06 April 2018, 14:24:54 UTC |
14c3670 | Daniel Edler | 05 April 2018, 15:58:48 UTC | Merge branch 'develop' into feature/cell-similarity | 05 April 2018, 15:58:48 UTC |
9e47970 | Daniel Edler | 05 April 2018, 15:58:28 UTC | Fix not reset zoom on map redraw | 05 April 2018, 15:58:28 UTC |
79dc5c4 | Daniel Edler | 05 April 2018, 15:27:19 UTC | Highlight similar grid cells on click, based on Jaccard index | 05 April 2018, 15:27:19 UTC |
57a9636 | Daniel Edler | 04 April 2018, 13:14:54 UTC | Fix bipartite node index offset in exported network | 04 April 2018, 13:47:10 UTC |
a3289d4 | Daniel Edler | 04 April 2018, 13:05:08 UTC | Simplify upgrade by removing native node-sass module | 04 April 2018, 13:05:08 UTC |
2bcf091 | Daniel Edler | 04 April 2018, 12:50:04 UTC | Import multipolygons 10 times faster with custom bbox calculation | 04 April 2018, 12:50:04 UTC |
f2389f1 | Daniel Edler | 29 March 2018, 08:43:31 UTC | Fix don't limit indicator species to list of top common species | 29 March 2018, 08:43:31 UTC |
9edeb02 | Daniel Edler | 29 March 2018, 08:39:44 UTC | Update "How to cite" with relevant paper references | 29 March 2018, 08:39:44 UTC |
e2f0cce | Daniel Edler | 19 February 2018, 21:04:26 UTC | Merge branch 'feature/streaming-input' into develop | 19 February 2018, 21:04:26 UTC |
4ec4b2c | Daniel Edler | 18 February 2018, 22:10:16 UTC | Update jquery/semantic-ui | 19 February 2018, 17:24:22 UTC |
8637389 | Daniel Edler | 18 February 2018, 21:58:12 UTC | Update semantic-ui | 18 February 2018, 21:58:12 UTC |
0b25ed5 | Daniel Edler | 18 February 2018, 21:48:27 UTC | Simplify shapefile geometry while loading to handle big files | 18 February 2018, 21:48:27 UTC |
42142d1 | Daniel Edler | 07 April 2017, 11:21:08 UTC | Patch sparse nodes by default again but include a toggle Also catch and display general errors | 07 April 2017, 11:21:08 UTC |
2ecdaaf | Daniel Edler | 28 March 2017, 17:31:06 UTC | Update links to paper | 28 March 2017, 17:31:06 UTC |
7533c40 | Daniel Edler | 13 March 2017, 13:28:23 UTC | Export bipartite network | 13 March 2017, 13:28:23 UTC |
22ce090 | Daniel Edler | 13 March 2017, 11:04:49 UTC | Merge branch 'fix/overlapping-cells' into develop | 13 March 2017, 11:04:49 UTC |
d710c4a | Daniel Edler | 22 August 2016, 17:33:05 UTC | Fix link to thumbnail image for article | 22 August 2016, 17:33:05 UTC |
33bb16b | Daniel Edler | 29 July 2016, 16:19:46 UTC | Skip patch parent cell if empty sub-cells created | 29 July 2016, 16:19:46 UTC |
ad157dd | Daniel Edler | 27 May 2016, 11:34:08 UTC | More 'unique species' -> 'species' | 27 May 2016, 11:34:08 UTC |
105a5fe | Daniel Edler | 27 May 2016, 11:26:31 UTC | Use Fitch's parsimony on example phylogram in docs | 27 May 2016, 11:26:31 UTC |
8823c9a | Daniel Edler | 27 May 2016, 11:04:01 UTC | In summary tables, 'unique species' -> 'species' | 27 May 2016, 11:04:01 UTC |
439868a | Daniel Edler | 23 May 2016, 13:35:28 UTC | Use own nexus parser to fix translations | 23 May 2016, 13:35:28 UTC |
f0f77a2 | Daniel Edler | 23 May 2016, 12:14:24 UTC | Merge branch 'develop' into fix/nexus-parsing | 23 May 2016, 12:14:24 UTC |
82c87cf | Daniel Edler | 23 May 2016, 12:08:23 UTC | Fix pie chart tooltip name offset and style | 23 May 2016, 12:08:23 UTC |
f044c77 | Daniel Edler | 23 May 2016, 06:33:14 UTC | Add tooltip on pie charts in bioregions tables | 23 May 2016, 06:33:14 UTC |
e8b5410 | Daniel Edler | 23 May 2016, 06:02:20 UTC | Fix use max. parsimony also when loading tree first | 23 May 2016, 06:02:20 UTC |
0159622 | Daniel Edler | 23 May 2016, 05:39:48 UTC | WIP: new nexus parsing | 23 May 2016, 05:39:48 UTC |
4d93ff2 | Daniel Edler | 22 May 2016, 19:35:53 UTC | Fix init with count 1 for max parsimony | 22 May 2016, 19:35:53 UTC |
92d8179 | Daniel Edler | 19 May 2016, 04:23:59 UTC | Update tree files, cleaned non-branching nodes | 19 May 2016, 04:23:59 UTC |
733af49 | Daniel Edler | 19 May 2016, 04:12:28 UTC | Fix normalize species name when prepare tree | 19 May 2016, 04:12:28 UTC |
778afbc | Daniel Edler | 19 May 2016, 03:59:52 UTC | Add pending test to prune non-branching nodes | 19 May 2016, 03:59:52 UTC |
911d24f | Daniel Edler | 19 May 2016, 03:51:39 UTC | Implement and test Fitch's maximum parsimony | 19 May 2016, 03:51:39 UTC |
e33da08 | Daniel Edler | 19 May 2016, 03:51:01 UTC | No infinite loop if missing ; in tree file | 19 May 2016, 03:51:01 UTC |
84f93e1 | Daniel Edler | 19 May 2016, 00:13:13 UTC | Don't log nexus tree comments in console | 19 May 2016, 00:13:13 UTC |
cc9418d | Daniel Edler | 18 May 2016, 23:10:46 UTC | Test reconstruct areas from tree | 18 May 2016, 23:10:46 UTC |
d53684e | Daniel Edler | 16 May 2016, 14:35:24 UTC | Support extended Newick format (with states from BayArea) | 16 May 2016, 14:35:24 UTC |
06ae2a9 | Daniel Edler | 16 May 2016, 02:34:31 UTC | cli: calculate max branch length | 16 May 2016, 02:34:31 UTC |
719ca60 | Daniel Edler | 16 May 2016, 01:49:11 UTC | Simplify tree by removing chains | 16 May 2016, 01:49:11 UTC |
7880a73 | Daniel Edler | 15 May 2016, 23:57:57 UTC | cli: prune distribution data to tree species | 15 May 2016, 23:59:06 UTC |
00af6f6 | Daniel Edler | 15 May 2016, 21:37:19 UTC | Export bioregion coordinates | 15 May 2016, 21:37:19 UTC |
7b9f396 | Daniel Edler | 15 May 2016, 20:42:35 UTC | Export species presence-absence in bioregions | 15 May 2016, 20:42:35 UTC |
80e6e54 | Daniel Edler | 15 May 2016, 17:17:59 UTC | Merge branch 'develop' into feature/phylogram | 15 May 2016, 17:17:59 UTC |
81910c3 | Daniel Edler | 08 May 2016, 23:17:59 UTC | Fix sort tree by bioregions for missing species | 08 May 2016, 23:17:59 UTC |
d043f12 | Daniel Edler | 08 May 2016, 12:26:43 UTC | Fix tree zoom | 08 May 2016, 12:26:43 UTC |
cf45fa2 | Daniel Edler | 06 May 2016, 10:16:37 UTC | Split sort and limit tree, add sort by bioregions | 06 May 2016, 10:16:37 UTC |
05481d2 | Daniel Edler | 05 May 2016, 16:50:01 UTC | No stroke on tree labels | 05 May 2016, 16:50:01 UTC |
a239e69 | Daniel Edler | 05 May 2016, 15:26:56 UTC | Don't adjust min/max to valid step size in TangleInput | 05 May 2016, 15:26:56 UTC |
0e3dfac | Daniel Edler | 05 May 2016, 15:10:14 UTC | Fix limit leaf count bug and add tree preparation test | 05 May 2016, 15:10:14 UTC |
60f898c | Daniel Edler | 02 May 2016, 03:38:50 UTC | Fix print JSON result for cli tool | 02 May 2016, 03:38:50 UTC |
5b81140 | Daniel Edler | 02 May 2016, 03:33:11 UTC | Fix default black fill color on labels | 02 May 2016, 03:33:11 UTC |
05bc1cb | Daniel Edler | 02 May 2016, 02:53:27 UTC | Fix missing import for cli tool | 02 May 2016, 02:53:27 UTC |
2d251c8 | Daniel Edler | 02 May 2016, 02:42:40 UTC | Color unclustered tree by leaf/occurrence count | 02 May 2016, 02:42:40 UTC |
422dac6 | Daniel Edler | 02 May 2016, 00:28:37 UTC | Don't render map/tree table if no map | 02 May 2016, 00:28:37 UTC |
42c847c | Daniel Edler | 01 May 2016, 23:32:38 UTC | Show tree minimap and stats | 01 May 2016, 23:32:38 UTC |
1a5b5ee | Daniel Edler | 01 May 2016, 10:49:32 UTC | Fix reset clusters on tree with new data | 01 May 2016, 10:49:32 UTC |
e5d318a | Daniel Edler | 01 May 2016, 10:17:20 UTC | Fix set clusters to limited tree | 01 May 2016, 10:17:20 UTC |