Revision 136239b1b6982162728571c43f500b3d67f3b897 authored by Daniel Blankenberg on 14 January 2015, 22:07:46 UTC, committed by Daniel Blankenberg on 14 January 2015, 22:07:46 UTC
1 parent 703cbb0
tool_data_table_conf.xml.sample
<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
<tables>
<!-- Locations of all fasta files under genome directory -->
<table name="all_fasta" comment_char="#">
<columns>value, dbkey, name, path</columns>
<file path="tool-data/all_fasta.loc" />
</table>
<!-- Locations of indexes in the BFAST mapper format -->
<table name="bfast_indexes" comment_char="#">
<columns>value, dbkey, formats, name, path</columns>
<file path="tool-data/bfast_indexes.loc" />
</table>
<!-- Locations of protein (mega)blast databases -->
<table name="blastdb_p" comment_char="#">
<columns>value, name, path</columns>
<file path="tool-data/blastdb_p.loc" />
</table>
<!-- Locations of indexes in the BWA mapper format -->
<table name="bwa_indexes" comment_char="#">
<columns>value, dbkey, name, path</columns>
<file path="tool-data/bwa_index.loc" />
</table>
<!-- Locations of indexes in the BWA color-space mapper format -->
<table name="bwa_indexes_color" comment_char="#">
<columns>value, dbkey, name, path</columns>
<file path="tool-data/bwa_index_color.loc" />
</table>
<!-- Locations of MAF files that have been indexed with bx-python -->
<table name="indexed_maf_files">
<columns>name, value, dbkey, species</columns>
<file path="tool-data/maf_index.loc" />
</table>
<!-- Locations of fasta files appropriate for NGS simulation -->
<table name="ngs_sim_fasta" comment_char="#">
<columns>value, dbkey, name, path</columns>
<file path="tool-data/ngs_sim_fasta.loc" />
</table>
<!-- Locations of PerM base index files -->
<table name="perm_base_indexes" comment_char="#">
<columns>value, name, path</columns>
<file path="tool-data/perm_base_index.loc" />
</table>
<!-- Locations of PerM color-space index files -->
<table name="perm_color_indexes" comment_char="#">
<columns>value, name, path</columns>
<file path="tool-data/perm_color_index.loc" />
</table>
<!-- Location of Picard dict file and other files -->
<table name="picard_indexes" comment_char="#">
<columns>value, dbkey, name, path</columns>
<file path="tool-data/picard_index.loc" />
</table>
<!-- Location of SRMA dict file and other files -->
<table name="srma_indexes" comment_char="#">
<columns>value, dbkey, name, path</columns>
<file path="tool-data/picard_index.loc" />
</table>
<!-- Location of Mosaik files -->
<table name="mosaik_indexes" comment_char="#">
<columns>value, dbkey, name, path</columns>
<file path="tool-data/mosaik_index.loc" />
</table>
</tables>
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