| 1bc2c53 | Shifu Chen | 19 May 2022, 01:34:02 UTC | Merge pull request #409 from asan-emirsaleh/patch-1 Update README.md | 19 May 2022, 01:34:02 UTC |
| f281533 | Asan Emirsaleh | 18 May 2022, 20:20:20 UTC | Update README.md Typo fixed -dup_calc_accracy > dup_calc_accuracy | 18 May 2022, 20:20:20 UTC |
| ab8c7fe | Shifu Chen | 22 December 2021, 03:29:48 UTC | Merge pull request #385 from neoformit/fix-plotly-https Update plotly.js URL to HTTPS | 22 December 2021, 03:29:48 UTC |
| 53feea1 | Cameron Hyde | 14 December 2021, 23:58:01 UTC | Update plotly.js URL to HTTPS | 14 December 2021, 23:58:01 UTC |
| 254ec78 | Shifu Chen | 01 December 2021, 13:35:43 UTC | set version to 0.23.2 | 01 December 2021, 13:35:43 UTC |
| 469b419 | Shifu Chen | 01 December 2021, 13:31:42 UTC | fix crash bug of interleaved input https://github.com/OpenGene/fastp/issues/376 https://github.com/OpenGene/fastp/issues/382 | 01 December 2021, 13:31:42 UTC |
| e2dfd73 | Shifu Chen | 03 November 2021, 14:14:20 UTC | Merge pull request #372 from tmaklin/master Fix compile error on some Linux distros | 03 November 2021, 14:14:20 UTC |
| d796f76 | Tommi Mäklin | 01 November 2021, 11:25:24 UTC | Add missing include for memcpy | 01 November 2021, 11:25:24 UTC |
| 7c3028a | Shifu Chen | 19 October 2021, 02:19:29 UTC | Update README.md | 19 October 2021, 02:19:29 UTC |
| c88e9c3 | Shifu Chen | 19 October 2021, 02:18:07 UTC | Update README.md | 19 October 2021, 02:18:07 UTC |
| c156504 | Shifu Chen | 19 October 2021, 02:12:30 UTC | fix possible hang when unpaired1 and unpaired2 set to the same filename and set version to v0.17.1 | 19 October 2021, 02:12:30 UTC |
| 166723a | Shifu Chen | 11 October 2021, 06:48:16 UTC | Update README.md | 11 October 2021, 06:48:16 UTC |
| c66b831 | Shifu Chen | 08 October 2021, 06:45:15 UTC | update README for v0.23.0 to release | 08 October 2021, 06:45:15 UTC |
| fd60e03 | Shifu Chen | 07 October 2021, 00:19:52 UTC | clear asserts | 07 October 2021, 00:19:52 UTC |
| d2b5588 | Shifu Chen | 06 October 2021, 03:36:28 UTC | optimize appendToString | 06 October 2021, 03:36:28 UTC |
| 17c9898 | Shifu Chen | 05 October 2021, 13:21:44 UTC | remove gcc 4.8 warning from README since it's fixed | 05 October 2021, 13:21:44 UTC |
| bc4120d | Shifu Chen | 05 October 2021, 13:19:48 UTC | add -pthread to linker option to fix gcc 4.8 issue | 05 October 2021, 13:19:48 UTC |
| c879f48 | Shifu Chen | 05 October 2021, 03:59:43 UTC | update Makefile to support make static | 05 October 2021, 03:59:43 UTC |
| 24d9db9 | Shifu Chen | 04 October 2021, 23:30:39 UTC | use readpool to reduce new/delete overhead | 04 October 2021, 23:30:39 UTC |
| d5c8cee | Shifu Chen | 04 October 2021, 00:10:29 UTC | update singleproducersingleconsumerlist.h to support blockized list | 04 October 2021, 00:10:29 UTC |
| 3667f50 | Shifu Chen | 27 September 2021, 10:22:41 UTC | fix possible crash caused by mBufDataLen == 0 | 27 September 2021, 10:22:41 UTC |
| b2bfe78 | Shifu Chen | 27 September 2021, 04:18:00 UTC | use buffer in writer | 27 September 2021, 04:18:00 UTC |
| 19968f5 | Shifu Chen | 27 September 2021, 03:57:31 UTC | fix the issue of empty input | 27 September 2021, 03:57:31 UTC |
| c987a1e | Shifu Chen | 27 September 2021, 01:50:46 UTC | delete or1/or2 for PE processing | 27 September 2021, 01:50:46 UTC |
| a36d135 | Shifu Chen | 26 September 2021, 15:21:08 UTC | use atomic_fetch_add | 26 September 2021, 15:21:45 UTC |
| 2d46a44 | Shifu Chen | 26 September 2021, 13:38:39 UTC | set worker thread number default to 3 | 26 September 2021, 13:38:39 UTC |
| 0cf3bbc | Shifu Chen | 26 September 2021, 13:28:05 UTC | fix the issue of incomplete reading | 26 September 2021, 13:28:05 UTC |
| a05b0b4 | Shifu Chen | 26 September 2021, 10:03:16 UTC | log info improvement for PE data | 26 September 2021, 10:03:16 UTC |
| 5644e35 | Shifu Chen | 26 September 2021, 09:02:04 UTC | README: install libisal on /usr/lib64 | 26 September 2021, 09:02:04 UTC |
| a6a64b1 | Shifu Chen | 26 September 2021, 08:34:05 UTC | update README | 26 September 2021, 08:34:05 UTC |
| c6b296e | Shifu Chen | 26 September 2021, 07:51:55 UTC | Update README.md | 26 September 2021, 07:51:55 UTC |
| a97c1af | Shifu Chen | 26 September 2021, 07:49:21 UTC | Update README.md | 26 September 2021, 07:49:21 UTC |
| 250c5f9 | Shifu Chen | 25 September 2021, 14:47:34 UTC | code refactoring | 25 September 2021, 14:47:34 UTC |
| e0b1997 | Shifu Chen | 25 September 2021, 02:56:04 UTC | warn gcc 4.8 not compatible | 25 September 2021, 02:56:04 UTC |
| e5cec5f | Shifu Chen | 25 September 2021, 02:40:41 UTC | set default compression level to 4 | 25 September 2021, 02:40:41 UTC |
| feb06af | Shifu Chen | 24 September 2021, 14:34:26 UTC | use SingleProducerSingleConsumerList for writer to remove mutex and get reproducible result | 24 September 2021, 14:34:26 UTC |
| 8d2887a | Shifu Chen | 24 September 2021, 06:03:18 UTC | update README | 24 September 2021, 06:03:18 UTC |
| 1000862 | Shifu Chen | 24 September 2021, 03:17:41 UTC | add libdeflate.h | 24 September 2021, 03:17:41 UTC |
| b5dc7a4 | Shifu Chen | 23 September 2021, 14:47:06 UTC | set default compression level to 6 | 23 September 2021, 14:47:06 UTC |
| cfdd0ab | Shifu Chen | 23 September 2021, 14:36:04 UTC | replace libz with libdeflate for gz writing | 23 September 2021, 14:36:04 UTC |
| 07e475e | Shifu Chen | 22 September 2021, 14:30:06 UTC | fix thread competition issue | 22 September 2021, 14:30:06 UTC |
| 1787de7 | Shifu Chen | 22 September 2021, 06:38:42 UTC | fix loginfo | 22 September 2021, 06:38:42 UTC |
| 1a7a513 | Shifu Chen | 21 September 2021, 13:20:35 UTC | fix bug of mPackProcessedCounter not changed in PE data | 21 September 2021, 13:20:35 UTC |
| 6b49265 | Shifu Chen | 20 September 2021, 14:59:54 UTC | restore PACK_IN_MEM_LIMIT control | 20 September 2021, 14:59:54 UTC |
| 5305235 | Shifu Chen | 20 September 2021, 13:47:12 UTC | add duplication level table | 20 September 2021, 13:47:12 UTC |
| 354ede1 | Shifu Chen | 20 September 2021, 13:40:35 UTC | revise duplication calc accuracy levels | 20 September 2021, 13:40:35 UTC |
| 2e037f3 | Shifu Chen | 20 September 2021, 13:27:04 UTC | supporting dup_calc_accuracy level | 20 September 2021, 13:27:04 UTC |
| d35fa6c | Shifu Chen | 19 September 2021, 12:58:55 UTC | add make static | 19 September 2021, 12:58:55 UTC |
| 3bd4268 | Shifu Chen | 19 September 2021, 00:30:32 UTC | make duplication evaluation stable and reproducible. | 19 September 2021, 00:30:32 UTC |
| c21f2e4 | Shifu Chen | 18 September 2021, 14:49:03 UTC | update README for compiling fastp | 18 September 2021, 14:49:03 UTC |
| ceedcc7 | Shifu Chen | 18 September 2021, 14:22:55 UTC | set version to v0.23.0 | 18 September 2021, 14:22:55 UTC |
| d5b4c2b | Shifu Chen | 18 September 2021, 14:17:22 UTC | code refactoring | 18 September 2021, 14:17:22 UTC |
| 0721ab0 | Shifu Chen | 18 September 2021, 12:23:33 UTC | read R1/R2 with different thread for PE data | 18 September 2021, 12:23:33 UTC |
| 7a8940b | Shifu Chen | 18 September 2021, 08:38:53 UTC | update thread config | 18 September 2021, 08:38:53 UTC |
| ad4a71f | Shifu Chen | 18 September 2021, 03:43:57 UTC | switch to using SingleProducerSingleConsumerList for SE data | 18 September 2021, 03:43:57 UTC |
| 373db2c | Shifu Chen | 16 September 2021, 12:58:57 UTC | fix trimAndCut regression issue | 16 September 2021, 12:58:57 UTC |
| 53275f9 | Shifu Chen | 16 September 2021, 10:10:38 UTC | switch to string* for performance consideration | 16 September 2021, 10:10:38 UTC |
| 08c946e | Shifu Chen | 28 August 2021, 13:39:02 UTC | switch to isa-l for gzip decoding | 28 August 2021, 13:39:02 UTC |
| 11d39f2 | Shifu Chen | 24 August 2021, 14:00:31 UTC | fix README | 24 August 2021, 14:00:31 UTC |
| ccf9752 | Shifu Chen | 24 August 2021, 13:54:00 UTC | refine deduplication docs and options | 24 August 2021, 13:54:00 UTC |
| 9acce05 | Shifu Chen | 24 August 2021, 01:51:47 UTC | Merge pull request #358 from knachte/master Changed the typedefs for (u)int64 to (unsigned) long long for mingw | 24 August 2021, 01:51:47 UTC |
| 56cce0b | Kristof Nachtergaele | 18 August 2021, 14:57:11 UTC | Changed the typedefs for (u)int64 to (unsigned) long long when compiling for Windows | 18 August 2021, 14:57:11 UTC |
| 0f340b7 | Shifu Chen | 09 August 2021, 04:51:27 UTC | refine deduplication | 09 August 2021, 04:51:27 UTC |
| 64dcaa3 | Shifu Chen | 08 August 2021, 14:53:26 UTC | support deduplication and refine duplication evaluation | 08 August 2021, 14:53:26 UTC |
| 8f9d586 | Shifu Chen | 02 August 2021, 09:50:33 UTC | fix regex warning | 02 August 2021, 09:50:33 UTC |
| 3dbe1a8 | Shifu Chen | 02 August 2021, 09:29:32 UTC | Merge pull request #353 from KimBioInfoStudio/kim/json_rpt fix #343 | 02 August 2021, 09:29:32 UTC |
| 8c8ddb6 | kimbioinfostudio | 28 July 2021, 15:16:29 UTC | add fast version and seq info to json report; fix #343 | 28 July 2021, 15:16:29 UTC |
| 85df18f | kimbioinfostudio | 28 July 2021, 15:15:17 UTC | ignore vscode config; add test output | 28 July 2021, 15:15:17 UTC |
| 45e9580 | Shifu Chen | 30 June 2021, 13:57:10 UTC | fix compilation failure bug on Linux about atomic https://github.com/OpenGene/fastp/issues/348 | 30 June 2021, 13:57:10 UTC |
| f790bca | Shifu Chen | 29 June 2021, 03:09:00 UTC | fix unstable insert size peak statistics | 29 June 2021, 03:09:00 UTC |
| 424900e | Shifu Chen | 14 October 2020, 09:40:00 UTC | Merge pull request #293 from kuzmanovicnenad/master Add alternative plotly https src | 14 October 2020, 09:40:00 UTC |
| b2d1317 | Nenad Kuzmanovic | 14 October 2020, 09:16:04 UTC | Fix JS formatting | 14 October 2020, 09:16:04 UTC |
| 8bfb5d6 | Nenad Kuzmanovic | 13 October 2020, 21:39:52 UTC | Add alternative plotly https src | 13 October 2020, 21:39:52 UTC |
| e30ec11 | Shifu Chen | 13 October 2020, 06:51:17 UTC | Add MGI/BGI adapter sequences https://github.com/OpenGene/fastp/issues/259 | 13 October 2020, 06:51:17 UTC |
| a139a1d | Shifu Chen | 13 October 2020, 00:40:57 UTC | Merge pull request #292 from cbrueffer/autodetect-illumina550dx Add support for the Illumina NextSeq 550DX to the two color evaluator. | 13 October 2020, 00:40:57 UTC |
| 9d3d345 | Christian Brueffer | 12 October 2020, 15:16:39 UTC | Add support for the Illumina NextSeq 550DX to the two color evaluator. | 12 October 2020, 15:16:39 UTC |
| eb61c53 | Shifu Chen | 08 October 2020, 12:39:04 UTC | Merge pull request #291 from sanjaymsh/ppc64le Travis-ci: added support for ppc64le | 08 October 2020, 12:39:04 UTC |
| 4a977e2 | sanjay-cpu | 07 October 2020, 13:32:16 UTC | Travis-ci: added support for ppc64le | 07 October 2020, 13:32:16 UTC |
| f4d0741 | Shifu Chen | 26 September 2020, 01:34:38 UTC | Merge pull request #286 from KimBioInfoStudio/kim/add_bd_on_win add build on windows to readme | 26 September 2020, 01:34:38 UTC |
| 69702c5 | Shifu Chen | 26 September 2020, 01:32:54 UTC | Merge pull request #285 from KimBioInfoStudio/kim/imporve_make_clean imporve make clean | 26 September 2020, 01:32:54 UTC |
| 77ff791 | Shifu Chen | 26 September 2020, 01:30:03 UTC | Merge pull request #272 from olgabot/patch-1 Rename --polyX --> --trim_poly_x in README | 26 September 2020, 01:30:03 UTC |
| 03b6144 | kimbioinfostudio | 23 September 2020, 14:32:35 UTC | add build on windows | 23 September 2020, 14:32:35 UTC |
| 0dfe657 | kimbioinfostudio | 23 September 2020, 14:27:55 UTC | imporve make clean | 23 September 2020, 14:27:55 UTC |
| 4c2a6cd | Shifu Chen | 17 September 2020, 08:39:57 UTC | Change date | 17 September 2020, 08:39:57 UTC |
| 911533d | Shifu Chen | 21 July 2020, 23:04:09 UTC | Merge pull request #273 from nh13/patch-1 Pad loginfo time with a zero | 21 July 2020, 23:04:09 UTC |
| 5d78caf | Nils Homer | 21 July 2020, 18:50:50 UTC | Pad loginfo time with a zero Changes ``` [18:50:9] loaded 18M reads ``` to ``` [18:50:09] loaded 18M reads ``` | 21 July 2020, 18:50:50 UTC |
| 89099cd | Olga Botvinnik | 17 July 2020, 14:33:53 UTC | Rename --polyX --> --trim_poly_x | 17 July 2020, 14:33:53 UTC |
| 39ae164 | Shifu Chen | 23 June 2020, 06:39:38 UTC | Merge pull request #263 from kislyuk/patch-1 Fix typo | 23 June 2020, 06:39:38 UTC |
| 73dae0c | Andrey Kislyuk | 23 June 2020, 06:26:30 UTC | Fix typo | 23 June 2020, 06:26:30 UTC |
| 207433e | Shifu Chen | 19 June 2020, 07:25:34 UTC | fix the offset bug when outputting overlapped regions | 19 June 2020, 07:25:34 UTC |
| 0da2f13 | Shifu Chen | 19 June 2020, 06:14:05 UTC | set version to v0.21.0 | 19 June 2020, 06:14:05 UTC |
| 94c08a1 | Shifu Chen | 19 June 2020, 05:57:02 UTC | support outputing overlapped regions to get the cleanest data | 19 June 2020, 05:57:02 UTC |
| 8f0ecea | Shifu Chen | 08 April 2020, 07:26:52 UTC | swith to use opengene.org/plotly-1.2.0.min.js since the plotly.js CDN is not stable | 08 April 2020, 07:26:52 UTC |
| c2296f9 | Shifu Chen | 17 March 2020, 09:43:49 UTC | add an option to fix MGI FASTQ ID format issue | 17 March 2020, 09:43:49 UTC |
| dcc1af8 | Shifu Chen | 21 February 2020, 09:33:07 UTC | Merge pull request #241 from oschwengers/master Fix 'umpaired' typo in readme and main.cpp | 21 February 2020, 09:33:07 UTC |
| 941d1df | Oliver Schwengers | 21 February 2020, 09:25:43 UTC | fix typo in main | 21 February 2020, 09:25:43 UTC |
| 2750067 | Oliver Schwengers | 21 February 2020, 09:22:10 UTC | fix typo in readme | 21 February 2020, 09:22:10 UTC |
| 6ff0ffa | Shifu Chen | 17 April 2019, 03:23:22 UTC | set version to v0.20.0 | 17 April 2019, 03:23:22 UTC |
| 03aa323 | Shifu Chen | 17 April 2019, 01:23:14 UTC | revise doc for overlap detection | 17 April 2019, 01:23:14 UTC |
| abe7154 | Shifu Chen | 17 April 2019, 01:09:43 UTC | revise PE base correction and adapter trimming | 17 April 2019, 01:09:43 UTC |
