| 1cf5789 | Collin Capano | 01 August 2017, 15:44:20 UTC | fix multiline | 03 August 2017, 08:43:37 UTC |
| 01f1db2 | Collin Capano | 01 August 2017, 13:45:41 UTC | fix example | 03 August 2017, 08:43:37 UTC |
| 77945b3 | Collin Capano | 01 August 2017, 11:58:55 UTC | update examples | 03 August 2017, 08:43:37 UTC |
| 7d4063d | Collin Capano | 31 July 2017, 19:41:22 UTC | fix typos in likelihood doc string | 03 August 2017, 08:43:37 UTC |
| 9f07f9c | Tito Dal Canton | 02 August 2017, 17:25:40 UTC | pycbc.vetoes.chisq: silence ultra-verbose log messages (#1824) pycbc_live log files are dominated by a few messages coming from chisq calculation for every trigger. This patch drops the log size by almost 20 times. | 02 August 2017, 17:25:40 UTC |
| 77bd50b | Collin Capano | 02 August 2017, 16:53:51 UTC | reset table (#1823) | 02 August 2017, 16:53:51 UTC |
| c49437e | Alex Nitz | 02 August 2017, 14:56:30 UTC | At methods to shift time / frequency series by seconds. (#1816) * shift time series methods * rename to make cyclic shift more clear * fix typo | 02 August 2017, 14:56:30 UTC |
| 9518765 | Tom Callister | 02 August 2017, 08:49:09 UTC | Adding astropy to required packages (#1820) * Update requirements.txt Adding astropy package and dependencies (pytest>=2.8 and numpy>=1.9) * Update requirements.txt * Update setup.py Adding astropy to install_requires, updating numpy version accordingly (1.6.4 --> 1.9.0) | 02 August 2017, 08:49:09 UTC |
| cd9439c | Collin Capano | 02 August 2017, 08:47:15 UTC | Add a burn in module (#1797) * add burn in module * add write_burn_in method to samplers * add more functions to burn in module * rename module * add burnin module to init * save maximum of burn in iterations * add support for burn in module to pycbc_inference * add deprecation warning to pycbc_inference * fix typos * remove min_burnin_iterations from sampler classes * set sampler's burn_in_iterations attribute * fix bugs * fix bugs * fix acl to 1 if < than 2 samples * ensure at least one sample is retrieved * update option doc * add documentation * more documentation * burnin -> burn_in * pep-8 * add some comments, fix a bug in posterior_step * add example * move check for data len into calculate_acl | 02 August 2017, 08:47:15 UTC |
| 5280a27 | Alex Nitz | 02 August 2017, 08:46:09 UTC | add convenience method to remove x seconds from either side of array (#1793) * add convenience method to remove x seconds from either side of array * make explicit left and right crop argument * Update timeseries.py ws * Update timeseries.py ws | 02 August 2017, 08:46:09 UTC |
| 42e6b05 | specimenlife | 02 August 2017, 08:43:49 UTC | Added additional wf parameters for tidal EOB with dynamic tides (#1808) * Added additional wf parameters for tidal EOB with dynamic tides * Add additional tidal parameters for TEOB to parameters.py | 02 August 2017, 08:43:49 UTC |
| a63bd2e | Collin Capano | 31 July 2017, 20:45:04 UTC | Add program to extract posterior samples from inference files (#1789) * add support for copying inference files * add pycbc_inference_extract_samples * ensure pt sampler returns 3d array if not flatten * ad better documentation | 31 July 2017, 20:45:04 UTC |
| 577868f | Ian Harry | 31 July 2017, 17:44:35 UTC | Always run bank2hdf for HDF banks (#1811) | 31 July 2017, 17:44:35 UTC |
| 6335eb4 | Collin Capano | 28 July 2017, 13:21:00 UTC | Update examples in waveform.generator (#1814) * update examples * fix typo | 28 July 2017, 13:21:00 UTC |
| 2a9db13 | Collin Capano | 28 July 2017, 09:45:40 UTC | Some more updates to the inference docs (#1806) * change f_min, set f_ref, and use 8s psd seg len * change inj f min * adjusted f_ref * change spin bounds | 28 July 2017, 09:45:40 UTC |
| 1d7f07d | Collin Capano | 28 July 2017, 09:43:25 UTC | Fix segment length bug in compress bank (#1812) * fix segment length bug in compress_bank * fix a couple of bugs * fix typos | 28 July 2017, 09:43:25 UTC |
| 92e8204 | Tito Dal Canton | 27 July 2017, 21:23:37 UTC | workflow: fix error when datafind server port is not given (#1813) | 27 July 2017, 21:23:37 UTC |
| 30dbee2 | Ian Harry | 27 July 2017, 15:54:53 UTC | Allow EOBNRv2_ROM as template waveform (#1810) | 27 July 2017, 15:54:53 UTC |
| f134e09 | Thomas Dent | 27 July 2017, 15:52:10 UTC | Add network snr as possible coinc stat (#1809) * Add network snr as possible coinc stat * Revert "Add network snr as possible coinc stat" This reverts commit 7746a7c419f97c967ed6e2e9e5157a9273b7d494. * Add network snr as possible coinc stat | 27 July 2017, 15:52:10 UTC |
| 605873d | Ian Harry | 27 July 2017, 11:58:54 UTC | Reenable important tests (#1805) | 27 July 2017, 11:58:54 UTC |
| 2d7f879 | Will Meierjurgen Farr | 26 July 2017, 22:45:21 UTC | Fix zero-padding bug in ACF computation. (#1804) | 26 July 2017, 22:45:21 UTC |
| 205fe53 | John Veitch | 24 July 2017, 21:57:50 UTC | Fix tests/fft_base.py Refs pull request #1803 * Check for _delta_t and _delta_f in deciding what type an array is * Disable lal fft in test_rev_real_fs | 26 July 2017, 15:06:48 UTC |
| 159cb1e | Collin Capano | 26 July 2017, 08:48:13 UTC | Fix emcee_pt pickling bug (#1801) * use global instance in emcee_pt to get around pickling * remove _callable | 26 July 2017, 08:48:13 UTC |
| 11ea444 | Collin Capano | 25 July 2017, 17:26:09 UTC | Use sampling transforms in inference docs (#1800) * use sampling transforms in docs * switch to uniform volume for distance distribution * add comment * remove logitq | 25 July 2017, 17:26:09 UTC |
| e20de6d | Alex Nitz | 25 July 2017, 09:10:49 UTC | allow workflows to run on internaly made Gaussian noise with a given PSD (#1794) * first pass for fake datafind pass through * allow psd to generate without frame files * cleanup * use the reproduceable noise generator in strain generator * bug fixes * one more fix | 25 July 2017, 09:10:49 UTC |
| 5f4b66b | Miriam Cabero | 24 July 2017, 11:22:45 UTC | New multi-mode ringdown approximant (#1790) * Fix Travis issues (hopefully) * Rebase with master (for spherical harmonics) and fix documentation typos * Change ringdown approximants' names * Adapt pycbc_ringinj to new approximants and names * Fix typos and remove unnecessary lines * Adapt generator ringdown classes to new approximants * Forgotten name-change in generator class * Missing inclination | 24 July 2017, 11:22:45 UTC |
| 0a8adfc | Alex Nitz | 23 July 2017, 13:18:58 UTC | rearrange the main index page a little, link to azure notebooks (#1796) | 23 July 2017, 13:18:58 UTC |
| cbf09de | Alex Nitz | 21 July 2017, 10:06:10 UTC | add description for the pypi page (#1795) * add description for the pypi page * few minor edits | 21 July 2017, 10:06:10 UTC |
| cece7a6 | Miriam Cabero | 18 July 2017, 08:42:45 UTC | Add inclination to pycbc_ringinj (#1792) | 18 July 2017, 08:42:44 UTC |
| 56f8934 | Miriam Cabero | 17 July 2017, 16:55:24 UTC | Add spherical harmonics to ringdown waveforms (#1791) | 17 July 2017, 16:55:24 UTC |
| 8aa4902 | Alex Nitz | 14 July 2017, 13:11:10 UTC | add module to make noise reproduceably (#1786) * add module to make noise reproducabely * fix normalization * ws * don't modify PSD in place, fix ws * handle boundary condition * remove ws | 14 July 2017, 13:11:10 UTC |
| c52b168 | Duncan Brown | 13 July 2017, 16:59:03 UTC | set for 1.7.5 release (#1788) | 13 July 2017, 16:59:03 UTC |
| 9006e94 | Duncan Brown | 13 July 2017, 16:58:49 UTC | Fixed edge cases in resolve_url (#1787) * fixed edge cases in resolve_url * remove unused module | 13 July 2017, 16:58:49 UTC |
| 3cc8ccb | Miriam Cabero | 12 July 2017, 16:39:58 UTC | Check for plotting options in pycbc_inference_plot_posterior (#1784) | 12 July 2017, 16:39:58 UTC |
| 2f13d03 | Duncan Brown | 12 July 2017, 14:51:50 UTC | Set back to development | 12 July 2017, 14:51:50 UTC |
| e8a5532 | Duncan Brown | 12 July 2017, 14:36:27 UTC | Set for 1.7.4 release | 12 July 2017, 14:36:27 UTC |
| 0975166 | Collin Capano | 12 July 2017, 14:01:49 UTC | Add an executable to create injection distributions (#1770) * add create_injections, updates to option_utils * add create_injections to setup.py * add help message describing config file syntax | 12 July 2017, 14:01:49 UTC |
| 02b913d | Duncan Brown | 12 July 2017, 12:26:52 UTC | Set for 1.7.3 release (#1775) * set for 1.7.3 release * install specific pylal for grb | 12 July 2017, 12:26:52 UTC |
| a6771ec | hannah-griggs | 19 June 2017, 17:07:11 UTC | Update inference.rst | 12 July 2017, 12:13:30 UTC |
| cbee26a | Duncan Brown | 12 July 2017, 00:11:09 UTC | do not deploy master to cvmfs | 12 July 2017, 00:11:09 UTC |
| 729c789 | Duncan Brown | 11 July 2017, 23:24:45 UTC | Check dest exists before stat | 11 July 2017, 23:24:45 UTC |
| 5ceccb8 | Duncan Brown | 11 July 2017, 20:53:12 UTC | removed debugging code | 11 July 2017, 20:53:12 UTC |
| a41cc1b | Alex Nitz | 11 July 2017, 20:27:23 UTC | Update configuration.py | 11 July 2017, 20:49:36 UTC |
| 9b210de | Duncan Brown | 11 July 2017, 19:05:54 UTC | add missing import | 11 July 2017, 20:49:36 UTC |
| 5761e84 | Duncan Brown | 11 July 2017, 19:04:23 UTC | handle src and dest are same | 11 July 2017, 20:49:36 UTC |
| 1a625ea | Duncan Brown | 11 July 2017, 20:44:10 UTC | fix typo | 11 July 2017, 20:48:56 UTC |
| a3d734d | Duncan Brown | 11 July 2017, 20:43:00 UTC | use ecp cookie compatible download code | 11 July 2017, 20:48:56 UTC |
| b72c530 | Duncan Brown | 11 July 2017, 19:45:38 UTC | Use v1.5 image with ecp-cookie-init | 11 July 2017, 19:45:38 UTC |
| e69a9bb | Duncan Brown | 11 July 2017, 19:45:11 UTC | Use v1.1 LDG base image with ecp-cookie-init | 11 July 2017, 19:45:11 UTC |
| 2c5cb4b | Duncan Brown | 11 July 2017, 18:56:34 UTC | add a debugging statement | 11 July 2017, 18:56:34 UTC |
| 4be3ba2 | Duncan Brown | 11 July 2017, 15:00:04 UTC | use string master not latest for install of head | 11 July 2017, 15:00:04 UTC |
| 55f81d7 | Alex Nitz | 11 July 2017, 14:25:03 UTC | simplify the qtransform module a bit, add convenience method (#1774) * qscan cleanup * simplify * Update qtransform.py * Update timeseries.py | 11 July 2017, 14:25:03 UTC |
| 1753345 | Duncan Brown | 11 July 2017, 14:19:29 UTC | install curl to get pegasus gpg key | 11 July 2017, 14:19:29 UTC |
| f6c3293 | Duncan Brown | 11 July 2017, 14:18:27 UTC | Run the workflow test using an ECP authenticated server (#1780) * pass both tag and venv path * run workflow test using ecp cookies | 11 July 2017, 14:18:27 UTC |
| 6d01451 | Duncan Brown | 11 July 2017, 14:12:26 UTC | install pegasus for workflow testing | 11 July 2017, 14:12:26 UTC |
| 5e090ac | Duncan Brown | 11 July 2017, 10:03:42 UTC | fixed landscape error | 11 July 2017, 13:37:14 UTC |
| f1ae2eb | Duncan Brown | 11 July 2017, 02:15:31 UTC | catch a sign in redirect on code.pycbc | 11 July 2017, 13:37:14 UTC |
| 5596339 | Duncan Brown | 11 July 2017, 02:06:44 UTC | handle a redirect from code.pycbc to git.ligo.org | 11 July 2017, 13:37:14 UTC |
| 8d2f64e | Duncan Brown | 11 July 2017, 00:04:57 UTC | fix codebeat issue | 11 July 2017, 13:37:14 UTC |
| 7eb8998 | Duncan Brown | 10 July 2017, 23:15:00 UTC | fix landscape issues | 11 July 2017, 13:37:14 UTC |
| d69e02e | Duncan Brown | 10 July 2017, 20:53:08 UTC | check for a sign-in redirect | 11 July 2017, 13:37:14 UTC |
| 6152710 | Duncan Brown | 10 July 2017, 20:08:53 UTC | clean up url code and allow ecp cookies | 11 July 2017, 13:37:14 UTC |
| f09c0fe | Duncan Brown | 10 July 2017, 19:37:41 UTC | require the requests package with retries | 11 July 2017, 13:37:14 UTC |
| bf33b8a | Duncan Brown | 11 July 2017, 13:25:27 UTC | add uuidgen for workflow testing | 11 July 2017, 13:25:27 UTC |
| 09823dd | Duncan Brown | 11 July 2017, 12:12:35 UTC | Delete autochisq_test.py (#1779) This file was renamed test_autochisq at some point, but the old name still persisted. Just spent some time figuring out why this file doesn't work ... Answer: it's 3 years out of date and needs deleting. | 11 July 2017, 12:12:35 UTC |
| cdc7eae | Duncan Brown | 11 July 2017, 11:14:03 UTC | add the ligo repos and keyring | 11 July 2017, 11:14:03 UTC |
| 1cc7294 | Duncan Brown | 11 July 2017, 10:43:50 UTC | add tools needed for secure build | 11 July 2017, 10:43:50 UTC |
| b500269 | Duncan Brown | 11 July 2017, 10:41:06 UTC | fixed typo in shell variable | 11 July 2017, 10:41:06 UTC |
| ecf95d6 | Alex Nitz | 11 July 2017, 10:26:25 UTC | add convenience whitening method (#1771) * add convenience whitening method * Update timeseries.py | 11 July 2017, 10:26:25 UTC |
| 5bcedec | Duncan Brown | 11 July 2017, 09:57:10 UTC | pass the full venv path to test workflow | 11 July 2017, 09:58:24 UTC |
| bcb2ab7 | Duncan Brown | 11 July 2017, 09:49:02 UTC | Revert "Revert "Add build for Debian virtual environment" (#1776)" This reverts commit 891994c5246e5e41805b7aaae6539fb79595c86d. | 11 July 2017, 09:58:24 UTC |
| 891994c | Alex Nitz | 11 July 2017, 08:22:10 UTC | Revert "Add build for Debian virtual environment" (#1776) * Revert "Add option in pycbc_ringinj to taper time-domain ringdown (#1766)" This reverts commit 31db6f8f015dd4c4605172803cc3266b67bcad95. * Revert "Add build for Debian virtual environment (#1756)" This reverts commit d4eb7ee7b69940a54b1a505bead656e98618f34c. | 11 July 2017, 08:22:10 UTC |
| 31db6f8 | Miriam Cabero | 11 July 2017, 08:21:09 UTC | Add option in pycbc_ringinj to taper time-domain ringdown (#1766) | 11 July 2017, 08:21:09 UTC |
| d4eb7ee | Duncan Brown | 11 July 2017, 07:28:35 UTC | Add build for Debian virtual environment (#1756) * resoved confict in docker image name * added debian virtual environment build * use tom's image for both jessie build * resoved confict by keeping pycbc docker image * install pip since ligo/lalsuite-dev does not have it | 11 July 2017, 07:28:35 UTC |
| 902b5c6 | Duncan Brown | 10 July 2017, 20:41:29 UTC | Use git.ligo.org for E@H test data on Travis (#1759) * move rom bank file to travis directory * make the download url an option * use git.ligo.org for eah travis tests * silence wget progress message * Revert "silence wget progress message" This reverts commit 5e7f01866881b9b22957b7b7bed8a885b87d6076. * fix download url * fix download url * Revert "Revert "silence wget progress message"" This reverts commit 0ccb6469ccfbdd8975cb9f0f38892a5e40fe4761. | 10 July 2017, 20:41:29 UTC |
| 197fcbe | Alex Nitz | 10 July 2017, 13:59:05 UTC | delete unused injection functions (#1769) * delete unused injection functions * Update inject.py * Update inject.py | 10 July 2017, 13:59:05 UTC |
| f331f55 | Alex Nitz | 06 July 2017, 22:39:11 UTC | add convenience method to call the welch psd estimation (#1767) * add convenience method to call the welch psd estimation * Update timeseries.py * Update timeseries.py | 06 July 2017, 22:39:11 UTC |
| 4815ba3 | Alex Nitz | 06 July 2017, 22:28:38 UTC | add ability to generate gaussian noise from name of psd (#1768) * add ability to generate gaussian noise from name of psd * Update __init__.py Following procedure of commenting out warnings/errors in landscape that are incorrect (or in this case, because of how we are using init files). * Update __init__.py Trying again * Update __init__.py Trying again. * Update gaussian.py | 06 July 2017, 22:28:38 UTC |
| 22b04a4 | Collin Capano | 05 July 2017, 13:51:05 UTC | fix bug in concatenate in new numpy versions (#1765) | 05 July 2017, 13:51:05 UTC |
| 95fac7b | Alex Nitz | 03 July 2017, 15:49:40 UTC | add helper to get a slice of a time series using actual times (#1764) * add helper to get a slice of a time series using actual times * change name to time slice | 03 July 2017, 15:49:40 UTC |
| ab66cee | Hunter Gabbard | 30 June 2017, 12:50:02 UTC | Fixed maximum q-tile bug in q-plane generator function. (#1762) | 30 June 2017, 12:50:02 UTC |
| aab69db | Bernd Machenschalk | 27 June 2017, 12:01:08 UTC | E@H build: install six unconditionally (#1760) - a certificate issue prevents six from being installed via dependency on Debian4 in a 'clean' E@H build | 27 June 2017, 12:01:08 UTC |
| 57099e6 | Hunter Gabbard | 26 June 2017, 22:08:32 UTC | Start of pycbc qtransform inspiral integration (#1755) * first test commit after recovery * removed system import quickfix line * pycbc_inspiral_main edits 1.) removed highpass filter 2.) removed redundant recalculation of segment psd 3.) changed variable names * Moved generic h5py save/load function to hdf.py * renamed pertinent pycbc_inspiral qtransform functions pycbc_insp_main -> inspiral_qtransform_generator pycbc_insp_tiling -> inspiral_tiling * Fixed landscape and codacy errors * Alex comments 1.) use frequency series duration and sample_rate attributes 2.) removed redundant changes to tdenergy variable * arg parser option 1.) Added option to in argument parser to perform q-transform or not 2.) Reworded function description in qplane * Fixed syntax error in pycbc_inspiral * Removed pycbc highpass_filter and welch modules from imports * Removed debugging line in qplane function * Alex suggested edits 1.) output is now compatible with events.py 2.) old version of fft/ifft in qtransform function reimplemented 3.) removed variables with capitals in names * removed print statement on line 71 of inspiral_qtransform_generator function * pycbc_inspiral edits 1.) changed qtransform option name 2.) edited qtransform if/else statements * fixed namespace error * Removed trailing whitespace in events.py | 26 June 2017, 22:08:32 UTC |
| 1148509 | Duncan Brown | 26 June 2017, 17:04:03 UTC | add a comment to fix travis issues | 26 June 2017, 17:04:03 UTC |
| 28d4cc7 | Duncan Brown | 26 June 2017, 17:00:03 UTC | fixed typo in travis build | 26 June 2017, 17:00:03 UTC |
| bbb86ce | Duncan Brown | 26 June 2017, 16:49:29 UTC | travis upgrade has broken docker image creation It appears that the last successful Docker image creation is https://travis-ci.org/ligo-cbc/pycbc/jobs/245400744 which is prior to the recent Travis upgrade to Ubuntu Trusty 14.04 https://blog.travis-ci.com/2017-06-21-trusty-updates-2017-Q2-launch I initially thought that this was similar to the problem @spxiwh fixed with https://github.com/ligo-cbc/pycbc/commit/ba6b50d4709354c147bdf25cb9dfd82fe2ee3b7b#diff-cdb0dd972a7b3681484b6c575f60b9a4R160 but it appears to be more complicated than that. So that the pycbc-el7:latest docker image is not broken, I have undone the changes in commits https://github.com/ligo-cbc/pycbc/commit/e6917b71c146c40bf7b3282c5f9967b1a4995832 and https://github.com/ligo-cbc/pycbc/commit/398ad531b9b882e8675b3f1aee229029bcf176f2 and added the line group: deprecated-2017Q2 to use the old Travis build image as described in the above Travis page. This will need to be fixed properly by September 1st, 2017 when this old image is removed. | 26 June 2017, 16:49:29 UTC |
| 398ad53 | Duncan Brown | 26 June 2017, 16:15:26 UTC | install the requirements to fix the docker image | 26 June 2017, 16:15:26 UTC |
| e6917b7 | Duncan Brown | 26 June 2017, 15:41:34 UTC | do not stall on host key checking | 26 June 2017, 15:41:34 UTC |
| 6466308 | Duncan Brown | 26 June 2017, 14:44:56 UTC | Fixed typo in PyCBC Docker image name introduced in https://github.com/ligo-cbc/pycbc/pull/1757 | 26 June 2017, 14:44:56 UTC |
| 6c2eb8d | Duncan Brown | 26 June 2017, 14:29:48 UTC | Pull PyCBC docker images with a specific tag and switch to git.ligo.org (#1757) * add version number to docker images * download files from git.ligo.org * get configuration files from github * add extra messages to prevent timeout * report download progress to prevent travis stall | 26 June 2017, 14:29:48 UTC |
| b60402a | Ian Harry | 21 June 2017, 14:45:41 UTC | Remove unused import (#1754) Landscape says "remove this". I obey. | 21 June 2017, 14:45:41 UTC |
| ad69f36 | Andrew R. Williamson | 19 June 2017, 08:06:21 UTC | Addressing landscape issues (#1751) | 19 June 2017, 08:06:21 UTC |
| 2f05a79 | Soumi De | 18 June 2017, 16:54:05 UTC | Enable splitbank code to write template duration in sub banks (#1749) | 18 June 2017, 16:54:05 UTC |
| 047fcb8 | Tito Dal Canton | 17 June 2017, 19:28:42 UTC | pycbc_live: survive GraceDB errors (#1750) * pycbc_live: survive GraceDB errors * pycbc_live: fix PSD selection for single-ifo events | 17 June 2017, 19:28:42 UTC |
| e1b3719 | Tito Dal Canton | 17 June 2017, 15:40:49 UTC | pycbc_live: misc improvements during ER11 (#1748) * pycbc_live: list followup detectors in various LIGOLW table fields * pycbc_live: tag some log messages with their detector * pycbc_live: test GraceDB access on startup | 17 June 2017, 15:40:49 UTC |
| dfc947c | Tito Dal Canton | 16 June 2017, 12:05:47 UTC | pycbc_live: fix more errors from pre-ER11 (#1747) | 16 June 2017, 12:05:47 UTC |
| da55fb1 | Duncan Brown | 15 June 2017, 16:13:40 UTC | Set back to development | 15 June 2017, 16:13:40 UTC |
| d59e662 | Duncan Brown | 15 June 2017, 14:00:34 UTC | set for 1.7.2 release (#1743) | 15 June 2017, 14:00:34 UTC |
| 29df1b5 | Ian Harry | 15 June 2017, 14:00:24 UTC | Add SCIENCE - CAT1 to A4 on summary pages (#1746) | 15 June 2017, 14:00:24 UTC |
| 23fd945 | Ian Harry | 15 June 2017, 13:59:59 UTC | FIx two_column template (#1745) | 15 June 2017, 13:59:59 UTC |
