1db699a | Julien Vitay | 12 June 2014, 06:41:08 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 12 June 2014, 06:41:08 UTC |
2226558 | Julien Vitay | 11 June 2014, 16:25:49 UTC | Added an error when loading data from an old ANNarchy version. | 11 June 2014, 16:25:49 UTC |
ae755c1 | Julien Vitay | 11 June 2014, 16:20:05 UTC | Transferred the building of a description to population and projection instead of IO. | 11 June 2014, 16:20:05 UTC |
9dd40e2 | Helge Dinkelbach | 11 June 2014, 09:32:58 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop | 11 June 2014, 09:32:58 UTC |
cb4fff0 | Helge Dinkelbach | 11 June 2014, 09:32:16 UTC | Each dendrite holds now a reference to its projection. | 11 June 2014, 09:32:16 UTC |
0ffca20 | Julien Vitay | 11 June 2014, 09:30:14 UTC | doc: added get_population | 11 June 2014, 09:30:14 UTC |
2265e2f | Julien Vitay | 11 June 2014, 08:25:00 UTC | Suppressed get_projection as PopulationViews can now be used to construct Projections... doc: updated the API and the inline docstrings. | 11 June 2014, 08:25:00 UTC |
354a905 | Julien Vitay | 10 June 2014, 16:08:08 UTC | doc: extended synaptic plasticity. | 10 June 2014, 16:08:08 UTC |
b7b6a7b | Julien Vitay | 10 June 2014, 14:32:40 UTC | Changed the interface of save and load. * Pure data was not used, so suppressed for now * flags have been changed to populations and projections in order to make sense. * data can be compressed with gzip if the filename ends with .gz * any other extension works (only .mat does not work) documentation is updated. | 10 June 2014, 14:32:40 UTC |
a0bcc66 | Julien Vitay | 10 June 2014, 12:19:14 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 10 June 2014, 12:19:14 UTC |
dfe3a17 | Julien Vitay | 10 June 2014, 12:18:31 UTC | doc: finished documenting recording functions. | 10 June 2014, 12:18:31 UTC |
5142fc3 | Helge | 09 June 2014, 10:35:42 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop | 09 June 2014, 10:35:42 UTC |
d221bde | Helge | 09 June 2014, 10:35:18 UTC | minor changes. | 09 June 2014, 10:35:18 UTC |
735032c | Helge | 09 June 2014, 10:34:16 UTC | Added matlab export to scalability class. Added seperate example for measurements with valgrind. | 09 June 2014, 10:34:16 UTC |
598acd6 | Helge | 09 June 2014, 10:31:40 UTC | Compilation with debug symbols in case of profile enabled. | 09 June 2014, 10:31:40 UTC |
a3fd0eb | Helge | 09 June 2014, 10:09:55 UTC | Added parallel logging class and added sample evaluation on compute sum. | 09 June 2014, 10:09:55 UTC |
8fc9bcd | Julien Vitay | 08 June 2014, 21:12:50 UTC | doc: added section on recording. | 08 June 2014, 21:12:50 UTC |
b26f8f3 | Julien Vitay | 06 June 2014, 14:27:51 UTC | Bug: coordinates_from_rank returned floats instead of ints!! | 06 June 2014, 14:27:51 UTC |
557af96 | Julien Vitay | 06 June 2014, 14:10:18 UTC | doc: Finished description of synaptic plasticity for spikes. | 06 June 2014, 14:10:18 UTC |
3754a78 | Helge | 06 June 2014, 12:55:34 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop | 06 June 2014, 12:55:34 UTC |
ea5e950 | Helge | 06 June 2014, 12:54:28 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop Added DiscreteUniform as distribution. Conflicts: ANNarchy/core/Random.py ANNarchy/generator/dendrite/DendriteGenerator.py ANNarchy/generator/population/PopulationGenerator.py | 06 June 2014, 12:54:28 UTC |
7ae77c8 | Julien Vitay | 06 June 2014, 12:29:57 UTC | Cleaned the simple std example | 06 June 2014, 12:29:57 UTC |
3f600b8 | Julien Vitay | 06 June 2014, 12:03:48 UTC | seeds are added again in the equations. | 06 June 2014, 12:03:48 UTC |
fc369f0 | Julien Vitay | 06 June 2014, 11:14:52 UTC | bug with t*dt. | 06 June 2014, 11:14:52 UTC |
4ed1096 | Julien Vitay | 06 June 2014, 09:31:26 UTC | Merge branch 'rate_code_delay' into develop | 06 June 2014, 09:31:26 UTC |
6adb06f | Julien Vitay | 06 June 2014, 09:30:46 UTC | Added delays to the NeuralField example. | 06 June 2014, 09:30:46 UTC |
bfd0469 | Julien Vitay | 06 June 2014, 09:27:13 UTC | t, t_pre and t_post are now in milliseconds, not steps pre_spike and post_spike accept conditional statements. | 06 June 2014, 09:27:13 UTC |
4ecf0e1 | Helge | 06 June 2014, 08:05:57 UTC | Extended set of distributions by: gamma, lognormal and exponential. | 06 June 2014, 08:05:57 UTC |
56506d7 | Helge | 05 June 2014, 17:07:58 UTC | Delays need to be greater then dt, to take effect. | 05 June 2014, 17:07:58 UTC |
362af38 | Helge Dinkelbach | 05 June 2014, 14:05:48 UTC | Added test for delayed synapses. | 05 June 2014, 14:05:48 UTC |
57f69fe | Helge | 04 June 2014, 14:26:09 UTC | Removed not needed debug outputs. | 04 June 2014, 14:26:09 UTC |
96c22c1 | Helge | 04 June 2014, 14:21:28 UTC | Fixed bug on accessing non constant delayed firing rates. | 04 June 2014, 14:21:28 UTC |
a04bb69 | Julien Vitay | 04 June 2014, 14:04:01 UTC | doc : Added a README file to the doc. | 04 June 2014, 14:04:01 UTC |
3048270 | Helge | 04 June 2014, 13:59:00 UTC | Updated createFromCSR according to structural change. | 04 June 2014, 13:59:00 UTC |
3492a68 | Helge | 04 June 2014, 13:52:04 UTC | Projections update the maximum delays of presynaptic populations. | 04 June 2014, 13:52:04 UTC |
6d2229d | Helge | 04 June 2014, 13:49:28 UTC | Analyzer forward access to CSR object of the projection. | 04 June 2014, 13:49:28 UTC |
463549a | Helge | 04 June 2014, 13:47:22 UTC | Extended CSR: delays are stored seperatly, added max_delay. Changed connectors: if delays are int they will be interpreted as time in ms. | 04 June 2014, 13:47:35 UTC |
23dea47 | Julien Vitay | 04 June 2014, 13:42:20 UTC | doc: documented RateSynapse in the manual. | 04 June 2014, 13:42:20 UTC |
8c2b816 | Julien Vitay | 04 June 2014, 11:22:24 UTC | doc: ratesynapse | 04 June 2014, 11:22:24 UTC |
5d74bfb | Julien Vitay | 04 June 2014, 10:59:09 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 04 June 2014, 10:59:09 UTC |
d137419 | Julien Vitay | 04 June 2014, 10:58:33 UTC | doc: started ratesynapse. | 04 June 2014, 10:58:33 UTC |
325afbf | Helge | 04 June 2014, 09:52:48 UTC | RateDendriteGenerator distinguishes now the psp implementation according to the delay. | 04 June 2014, 09:52:48 UTC |
e0afb86 | Julien Vitay | 04 June 2014, 08:57:07 UTC | doc: finished description of spiking neurons. | 04 June 2014, 08:57:07 UTC |
a9535fd | Julien Vitay | 04 June 2014, 08:56:07 UTC | Avoid storing population.ranks. The connectors check if it is a population or populationview. | 04 June 2014, 08:56:07 UTC |
dc03532 | Helge Dinkelbach | 03 June 2014, 09:49:36 UTC | Fixed typos. | 03 June 2014, 09:49:36 UTC |
89da3e8 | Julien Vitay | 02 June 2014, 12:43:30 UTC | g_exc=0.0 is now standard synaptic behavior. | 02 June 2014, 12:43:30 UTC |
80fe1c1 | Julien Vitay | 02 June 2014, 11:41:29 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 02 June 2014, 11:41:29 UTC |
1a21767 | Julien Vitay | 02 June 2014, 11:41:09 UTC | Merge branch 'popviews_connector' into develop | 02 June 2014, 11:41:09 UTC |
7801aa3 | Julien Vitay | 02 June 2014, 11:30:09 UTC | Started making g_exc = 0.0 default in spiking neurons. | 02 June 2014, 11:30:09 UTC |
8b8d349 | Helge | 02 June 2014, 09:09:26 UTC | Refractory period can be inited with random initialization. | 02 June 2014, 09:09:26 UTC |
7807dd5 | Julien Vitay | 01 June 2014, 18:58:55 UTC | Allowed PopulationViews to be used to build Projections (except gaussian and dog). | 01 June 2014, 18:58:55 UTC |
c98daa8 | Julien Vitay | 01 June 2014, 17:54:09 UTC | Started allowing PopulationViews to be used in Projections. Works for one sub-projection, but not two.... | 01 June 2014, 17:54:09 UTC |
d1ae89a | Helge | 01 June 2014, 10:10:10 UTC | Added measured times (raw data) to scalability plot. Reordered code of Performance test. | 01 June 2014, 10:10:10 UTC |
e80a85d | Helge | 31 May 2014, 17:27:01 UTC | Changed internal structure of profiling extension. Extended profiler by scalability analyzis. | 31 May 2014, 17:27:01 UTC |
4b985ad | Julien Vitay | 31 May 2014, 13:49:40 UTC | import numpy was not needed in Connector.pxd | 31 May 2014, 13:49:40 UTC |
af363c5 | Julien Vitay | 31 May 2014, 13:40:03 UTC | doc: added tutorial to build connector methods in Cython | 31 May 2014, 13:40:03 UTC |
f6a9edc | Julien Vitay | 31 May 2014, 12:16:01 UTC | Exported CSR to create conection patterns | 31 May 2014, 12:16:01 UTC |
1c12313 | Julien Vitay | 31 May 2014, 11:46:41 UTC | doc: refactored the documentation | 31 May 2014, 11:46:41 UTC |
05b90d1 | Julien Vitay | 29 May 2014, 19:23:11 UTC | Allowed RandomDistribution objects to take global parameters as arguments. Warning: - changes in the parameters won't have effect after compile() - Needs to find a structure for that, wuthout performance penalty. | 29 May 2014, 19:23:11 UTC |
a3d76ca | Julien Vitay | 29 May 2014, 13:37:39 UTC | min and max bounds of a variable can now be an expression of other variables. | 29 May 2014, 13:37:39 UTC |
2689fab | Julien Vitay | 29 May 2014, 12:30:21 UTC | Allowed the operators ==, !=, is and is not in conditions (also spike conditions) | 29 May 2014, 12:30:21 UTC |
28febbe | Julien Vitay | 29 May 2014, 11:05:43 UTC | Started version 4.1.3 | 29 May 2014, 11:05:43 UTC |
520e29b | Julien Vitay | 28 May 2014, 21:48:10 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 28 May 2014, 21:48:10 UTC |
b5e7f0d | Julien Vitay | 28 May 2014, 21:47:24 UTC | simplify for conditions produces weird C code. Taken out. | 28 May 2014, 21:47:24 UTC |
a612b15 | Julien Vitay | 28 May 2014, 21:46:25 UTC | Parser produced an error message when mean(pre.r) was used in a global variable. | 28 May 2014, 21:46:25 UTC |
44bba36 | Julien Vitay | 28 May 2014, 21:45:04 UTC | stop_recording() was giving a wrong error message. | 28 May 2014, 21:45:04 UTC |
9b14609 | Julien Vitay | 27 May 2014, 13:54:29 UTC | Analysis of psp was till the old way... | 27 May 2014, 13:54:29 UTC |
b0af439 | Helge | 26 May 2014, 22:11:38 UTC | Extended profiler. | 26 May 2014, 22:11:38 UTC |
97623a1 | Helge | 26 May 2014, 21:10:37 UTC | Added Network.destroy() function. | 26 May 2014, 21:10:37 UTC |
7aaa2a3 | Helge | 26 May 2014, 21:09:38 UTC | Added _DEBUG_SIMULATION_CONTROL condition to several debug messages. | 26 May 2014, 21:09:38 UTC |
34269b9 | Helge | 26 May 2014, 21:07:38 UTC | Added Network::destroy() | 26 May 2014, 21:07:38 UTC |
094a3e5 | Julien Vitay | 26 May 2014, 20:11:52 UTC | Fixed the _warning method to emit warnings only when warnings are not suppressed in setup() | 26 May 2014, 20:11:52 UTC |
0658ba7 | Julien Vitay | 26 May 2014, 19:33:37 UTC | Added warnings when a target is used in a neuron but not connected. | 26 May 2014, 19:33:37 UTC |
c3b10a0 | Julien Vitay | 26 May 2014, 19:27:36 UTC | Synapses now have access to pre.sum(dopa) or post.sum(exc) directly. | 26 May 2014, 19:27:36 UTC |
ff2249e | Julien Vitay | 26 May 2014, 16:16:04 UTC | Fixed bug wen accessing pre/post synaptic variables in a synapse. | 26 May 2014, 16:16:04 UTC |
2bb09cb | Julien Vitay | 26 May 2014, 15:51:23 UTC | Stored the inverse rank in pre_spike to avoid multiple accesses to the the array. | 26 May 2014, 15:51:23 UTC |
f845ea4 | Julien Vitay | 26 May 2014, 15:21:08 UTC | Moved PoissonPopulation to the core | 26 May 2014, 15:21:08 UTC |
b037e00 | Julien Vitay | 26 May 2014, 14:33:59 UTC | Allowed variables to differ only by capitalization (eg c and C). The generated C++ methods know follow the python convention, not C++. | 26 May 2014, 14:33:59 UTC |
167fb6d | Julien Vitay | 26 May 2014, 13:07:09 UTC | Started the 4.1.2 version. | 26 May 2014, 13:07:09 UTC |
a08fe0f | Julien Vitay | 26 May 2014, 13:04:01 UTC | Added a version tracker which recompiles when the ANNarchy release number has changed. | 26 May 2014, 13:04:01 UTC |
230e10f | Julien Vitay | 26 May 2014, 11:47:25 UTC | Replaced "rate" by "r". | 26 May 2014, 11:47:25 UTC |
643f353 | Julien Vitay | 26 May 2014, 11:27:41 UTC | Started replacing rate by r. Still a bug. | 26 May 2014, 11:27:41 UTC |
bf95395 | Julien Vitay | 23 May 2014, 15:26:58 UTC | Replaced systematically "value" by "w" | 23 May 2014, 15:26:58 UTC |
0e09ec4 | Julien Vitay | 23 May 2014, 14:37:28 UTC | Doc: fixed typos. | 23 May 2014, 14:37:28 UTC |
4575d70 | Helge Dinkelbach | 23 May 2014, 13:33:54 UTC | Split up propagate spike in pre and post phase. | 23 May 2014, 13:33:54 UTC |
7872920 | Helge Dinkelbach | 23 May 2014, 13:32:45 UTC | spike emitation only if not in refractory period. | 23 May 2014, 13:32:45 UTC |
e737951 | Helge Dinkelbach | 23 May 2014, 13:31:55 UTC | Pre events are only executed if there was no post spike. | 23 May 2014, 13:31:55 UTC |
2c81283 | Helge Dinkelbach | 23 May 2014, 13:31:12 UTC | Corrected indexing error. | 23 May 2014, 13:31:12 UTC |
cf633a6 | Helge Dinkelbach | 23 May 2014, 13:30:50 UTC | Added new functions for spike event handling | 23 May 2014, 13:30:50 UTC |
9b10515 | Helge Dinkelbach | 23 May 2014, 13:29:46 UTC | Propagate spikes now divided into post and pre phase. | 23 May 2014, 13:29:46 UTC |
ee476f2 | Helge Dinkelbach | 23 May 2014, 11:54:47 UTC | Merge branch 'refractory' into develop | 23 May 2014, 11:54:47 UTC |
c78d43b | Julien Vitay | 23 May 2014, 11:53:28 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 23 May 2014, 11:53:28 UTC |
7adb812 | Helge Dinkelbach | 23 May 2014, 11:53:24 UTC | Merge branch 'refractory' of https://bitbucket.org/annarchy/annarchy-4.0 into refractory | 23 May 2014, 11:53:24 UTC |
24c6238 | Helge Dinkelbach | 23 May 2014, 11:52:40 UTC | Set default number of threads to 1 | 23 May 2014, 11:52:40 UTC |
f453dd0 | Julien Vitay | 23 May 2014, 11:52:31 UTC | Updated the description of OpenMP in the doc. | 23 May 2014, 11:52:31 UTC |
774ce36 | Julien Vitay | 23 May 2014, 11:39:48 UTC | Added import numpy in Utils | 23 May 2014, 11:39:48 UTC |
2075442 | Helge Dinkelbach | 23 May 2014, 11:38:25 UTC | Updated docs: refractoriness. | 23 May 2014, 11:38:25 UTC |
7bfb539 | Helge Dinkelbach | 23 May 2014, 11:17:11 UTC | Added playground example for spike neurons. | 23 May 2014, 11:17:11 UTC |
b86a552 | Helge Dinkelbach | 23 May 2014, 11:07:17 UTC | Added Population::reset(int) to reset a neuron during refractoring period. | 23 May 2014, 11:08:17 UTC |
02d30e6 | Helge Dinkelbach | 23 May 2014, 11:06:06 UTC | Changed behavior of neurons during refactoring phase: reset is called every step. | 23 May 2014, 11:06:06 UTC |