| 1dc2a5c | Erin Weisbart | 07 November 2023, 17:30:37 UTC | typo in _config.yml | 07 November 2023, 17:30:37 UTC |
| 8ac1375 | Erin Weisbart | 19 October 2023, 21:47:23 UTC | new failure mode | 19 October 2023, 21:47:23 UTC |
| ade2c86 | Erin Weisbart | 16 August 2023, 23:06:38 UTC | more troubleshoot info for no dockers placed | 16 August 2023, 23:06:38 UTC |
| 487228a | bethac07 | 16 August 2023, 17:05:40 UTC | More informative name for digit padding variable | 16 August 2023, 17:05:40 UTC |
| 71e06dc | Fernanda Fossa | 16 August 2023, 17:03:57 UTC | Well formatting run_batch_general.py (#155) | 16 August 2023, 17:03:57 UTC |
| ebe3b7f | Erin Weisbart | 26 July 2023, 22:00:19 UTC | more info on load_data.csv | 26 July 2023, 22:00:19 UTC |
| 5321759 | Erin Weisbart | 24 July 2023, 18:33:48 UTC | improve auto-monitor | 24 July 2023, 18:33:48 UTC |
| 67d7365 | Erin Weisbart | 16 June 2023, 23:16:09 UTC | Update config_examples.md | 16 June 2023, 23:16:09 UTC |
| abfa1ec | Erin Weisbart | 15 June 2023, 22:30:09 UTC | Merge pull request #153 from DistributedScience/bugfix Bugfix | 15 June 2023, 22:30:09 UTC |
| f57acdc | Erin Weisbart | 15 June 2023, 18:53:03 UTC | missing comma | 15 June 2023, 18:53:03 UTC |
| 87f811d | Erin Weisbart | 15 June 2023, 17:23:37 UTC | Update deploy.yml update deprecated actions | 15 June 2023, 17:23:37 UTC |
| 9a09a65 | Erin Weisbart | 24 May 2023, 21:58:39 UTC | missed deleting last chunk of instances | 24 May 2023, 21:58:39 UTC |
| 8707080 | Erin Weisbart | 24 May 2023, 21:55:03 UTC | can only delete 100 alarms at a time | 24 May 2023, 21:55:03 UTC |
| bdd664e | Erin Weisbart | 24 May 2023, 19:02:05 UTC | dashboard read app name correctly | 24 May 2023, 19:02:05 UTC |
| e0f56d7 | Erin Weisbart | 24 May 2023, 18:52:16 UTC | revert to old S3 mount | 24 May 2023, 18:52:16 UTC |
| f99af21 | Erin Weisbart | 24 May 2023, 18:50:52 UTC | fix extra } in monitor | 24 May 2023, 18:50:52 UTC |
| ddd64d0 | Erin Weisbart | 18 May 2023, 22:06:30 UTC | Merge pull request #150 from DistributedScience/DSv0.1 update with DSv0.1 improvements | 18 May 2023, 22:06:30 UTC |
| 119a77b | Erin Weisbart | 16 May 2023, 21:00:48 UTC | edit link | 16 May 2023, 21:00:48 UTC |
| 0295eb5 | Erin Weisbart | 21 April 2023, 22:42:45 UTC | update with DSv0.1 improvements | 21 April 2023, 22:42:45 UTC |
| ad4dcc3 | Erin Weisbart | 31 March 2023, 04:23:13 UTC | make example config run easier | 31 March 2023, 04:23:13 UTC |
| 04dc035 | Erin Weisbart | 09 February 2023, 21:40:09 UTC | Merge pull request #147 from DistributedScience/metadata_clarification Clarify how to pass metadata in various DCP modes | 09 February 2023, 21:40:09 UTC |
| 9c7634c | Erin Weisbart | 09 February 2023, 21:39:40 UTC | .md formatting | 09 February 2023, 21:39:40 UTC |
| f9bb485 | Beth Cimini | 09 February 2023, 19:01:53 UTC | Update passing_files_to_DCP.md | 09 February 2023, 19:01:53 UTC |
| 851e295 | Erin Weisbart | 30 January 2023, 23:33:25 UTC | Merge pull request #146 from DistributedScience/Add-troubleshoot-missing-image Update troubleshooting_runs.md | 30 January 2023, 23:33:25 UTC |
| cffdd31 | Rebecca Senft | 25 January 2023, 15:00:28 UTC | Update troubleshooting_runs.md | 25 January 2023, 15:00:28 UTC |
| aeb0c66 | Erin Weisbart | 24 January 2023, 18:28:48 UTC | minor doc labels | 24 January 2023, 18:28:48 UTC |
| e08e0b7 | Erin Weisbart | 24 January 2023, 02:21:40 UTC | update README schematic | 24 January 2023, 02:21:40 UTC |
| 03f085d | Erin Weisbart | 24 January 2023, 01:27:53 UTC | fix documentation book | 24 January 2023, 01:27:53 UTC |
| e226968 | Erin Weisbart | 24 January 2023, 01:18:38 UTC | Cleanup open issues (#142) Cleans up a lot of open issues, including changes that: * add file input info to docs * fstrings * support for file lists * warning message for filtering csv * better error message for Cloudwatch grouping mismatch * working minimal example * add auto deadletter queue, dashboard Co-authored-by: Beth Cimini <bethac07@users.noreply.github.com> | 24 January 2023, 01:18:38 UTC |
| ce68572 | Erin Weisbart | 23 January 2023, 20:26:53 UTC | updated documentation (#143) | 23 January 2023, 20:26:53 UTC |
| 63a409a | Erin Weisbart | 21 January 2023, 00:59:35 UTC | correct role handling and S3FS bypass (#130) * correct role handling * enable separate source and destination buckets * fix complete s3fs bybass * add upload flags * update to AWS CLI2 | 21 January 2023, 00:59:35 UTC |
| d093164 | Erin Weisbart | 16 December 2022, 22:11:49 UTC | Merge pull request #140 from fefossa/issues/138 Comments on Flags for # PLUGINS in config.py | 16 December 2022, 22:11:49 UTC |
| 0834264 | Erin Weisbart | 16 December 2022, 22:09:59 UTC | Update advanced_configuration.md formatting edits | 16 December 2022, 22:09:59 UTC |
| 4814b34 | Erin Weisbart | 16 December 2022, 21:59:21 UTC | Update config.py minor formatting | 16 December 2022, 21:59:21 UTC |
| 631ae11 | ErinWeisbart | 15 November 2022, 19:12:27 UTC | change default DOCKER_CORES for analysis | 15 November 2022, 19:12:27 UTC |
| 9f3d735 | fefossa | 02 November 2022, 15:23:44 UTC | Add cellpose explanation to documentation | 02 November 2022, 15:23:44 UTC |
| 87e62ff | fefossa | 02 November 2022, 13:33:31 UTC | Comments on Flags for # PLUGINS in config.py | 02 November 2022, 13:33:31 UTC |
| 9917a06 | Erin Weisbart | 27 October 2022, 19:26:38 UTC | Merge pull request #139 from DistributedScience/more_docs More docs | 27 October 2022, 19:26:38 UTC |
| 3a4c4f2 | ErinWeisbart | 27 October 2022, 19:06:30 UTC | flesh out config examples | 27 October 2022, 19:06:30 UTC |
| 96404a6 | ErinWeisbart | 05 October 2022, 20:18:30 UTC | config egs to docs | 05 October 2022, 20:18:30 UTC |
| 2e73216 | Erin Weisbart | 04 October 2022, 20:20:33 UTC | Merge pull request #134 from DistributedScience/plugin_support Add better support for plugins | 04 October 2022, 20:20:33 UTC |
| ada57b3 | ErinWeisbart | 30 September 2022, 21:06:22 UTC | typo | 30 September 2022, 21:06:22 UTC |
| c808260 | ErinWeisbart | 30 September 2022, 21:04:37 UTC | branch is master not main | 30 September 2022, 21:04:37 UTC |
| f76b177 | ErinWeisbart | 30 September 2022, 21:00:19 UTC | deploy for documentation | 30 September 2022, 21:00:19 UTC |
| c06da5b | Erin Weisbart | 30 September 2022, 20:51:09 UTC | Update README.md | 30 September 2022, 20:51:09 UTC |
| c4008f5 | bethac07 | 23 September 2022, 13:10:20 UTC | Update makefile | 23 September 2022, 13:10:20 UTC |
| dc4d9a2 | Erin Weisbart | 23 September 2022, 13:06:25 UTC | Move documentation to Jupyter Book (#135) * jupyter book for documentation * fix deploy info * formatting, link to new documentation * ==ERR move failed to troubleshooting * S3FS failure to troubleshooting * more S3FS info to troubleshooting | 23 September 2022, 13:06:25 UTC |
| e244931 | ErinWeisbart | 15 September 2022, 21:12:22 UTC | black | 15 September 2022, 21:12:22 UTC |
| 6b8bbff | ErinWeisbart | 15 September 2022, 21:11:01 UTC | make back compatible | 15 September 2022, 21:11:01 UTC |
| 8ec4fea | bethac07 | 15 September 2022, 16:05:57 UTC | Remove crud | 15 September 2022, 16:05:57 UTC |
| 0c58556 | bethac07 | 15 September 2022, 16:04:49 UTC | Add exits for breaking things | 15 September 2022, 16:04:49 UTC |
| f7f4242 | bethac07 | 15 September 2022, 15:45:48 UTC | Fetch so can grab new commits | 15 September 2022, 15:45:48 UTC |
| 865d023 | bethac07 | 15 September 2022, 14:47:33 UTC | First pass | 15 September 2022, 14:47:33 UTC |
| b042f84 | Beth Cimini | 24 August 2022, 15:54:24 UTC | Somewhat less old AMI | 24 August 2022, 15:54:24 UTC |
| 2320eeb | Beth Cimini | 22 November 2021, 21:23:18 UTC | Fix Z projection jobs to use the right CSV | 22 November 2021, 21:23:18 UTC |
| ae8d94c | Beth Cimini | 21 October 2021, 23:15:55 UTC | Update run_batch_general.py | 21 October 2021, 23:15:55 UTC |
| 2c9e180 | Erin Weisbart | 15 October 2021, 18:17:20 UTC | Update README.md kerning | 15 October 2021, 18:17:20 UTC |
| 8d36a9d | Beth Cimini | 18 June 2021, 23:48:51 UTC | Realistic m4.xlarge defaults | 18 June 2021, 23:48:51 UTC |
| cecc701 | Beth Cimini | 18 June 2021, 23:43:06 UTC | Realistic m4.xlarge defaults | 18 June 2021, 23:43:06 UTC |
| 64ac0c0 | bethac07 | 18 June 2021, 23:15:06 UTC | regularize CSV names | 18 June 2021, 23:15:06 UTC |
| d4261c1 | bethac07 | 18 June 2021, 23:06:38 UTC | regularize app name, make comments more readable | 18 June 2021, 23:06:38 UTC |
| 5cf156b | bethac07 | 18 June 2021, 22:59:52 UTC | regularize and add all functions to run_batch_general | 18 June 2021, 22:59:52 UTC |
| d6c65a4 | bethac07 | 18 June 2021, 22:58:05 UTC | regularize and add all functions to run_batch_general | 18 June 2021, 22:58:05 UTC |
| d63d88f | ErinWeisbart | 16 June 2021, 18:23:51 UTC | Update config.py bump docker hub tag default => 4.1.3 | 16 June 2021, 18:23:51 UTC |
| 1d50754 | Beth Cimini | 08 April 2021, 21:47:36 UTC | Update README.md | 08 April 2021, 21:47:36 UTC |
| 552b2ec | Beth Cimini | 26 March 2021, 16:31:40 UTC | Clarify about logging, add pretty updated network diagram | 26 March 2021, 16:31:40 UTC |
| 1b1514f | Beth Cimini | 26 March 2021, 15:27:40 UTC | Update README.md | 26 March 2021, 15:27:40 UTC |
| afead55 | Beth Cimini | 19 March 2021, 13:21:33 UTC | Remove reference to fabric | 19 March 2021, 13:21:33 UTC |
| 174f0b4 | Beth Cimini | 15 January 2021, 15:42:29 UTC | Update exampleFleet_us-west-2.json | 15 January 2021, 15:42:29 UTC |
| 4abe95b | Beth Cimini | 15 January 2021, 15:42:14 UTC | Update exampleFleet_us-east-1.json | 15 January 2021, 15:42:14 UTC |
| 6a7b4be | Beth Cimini | 15 January 2021, 15:41:47 UTC | Update run_batch_general.py | 15 January 2021, 15:41:47 UTC |
| 915f1ef | Beth Cimini | 14 January 2021, 13:41:53 UTC | Update run.py (#122) | 14 January 2021, 13:41:53 UTC |
| 8ce77da | Beth Cimini | 13 November 2020, 20:19:37 UTC | Add Names to the volumes (#118) * Add Names to the volumes * Add Names to the volumes | 13 November 2020, 20:19:37 UTC |
| 6c59afc | Beth Cimini | 12 November 2020, 15:18:17 UTC | keep CSVs from overwriting one another | 12 November 2020, 15:18:17 UTC |
| 6563264 | Beth Cimini | 12 November 2020, 15:10:40 UTC | keep CSVs from overwriting one anohter | 12 November 2020, 15:10:40 UTC |
| d29f39c | Beth Cimini | 12 November 2020, 14:41:06 UTC | keep CSVs from overwriting one anohter | 12 November 2020, 14:41:06 UTC |
| b868abc | Beth Cimini | 12 November 2020, 14:33:02 UTC | keep CSVs from overwriting one anohter | 12 November 2020, 14:33:02 UTC |
| f02cc6e | Beth Cimini | 10 November 2020, 19:58:50 UTC | be more selective in file deletion | 10 November 2020, 19:58:50 UTC |
| 8ba8a7b | Beth Cimini | 10 November 2020, 16:09:18 UTC | Pin pandas for CP3 | 10 November 2020, 16:09:18 UTC |
| c4a9f83 | Beth Cimini | 10 November 2020, 15:59:50 UTC | Optionally download files to EBS rather than use S3FS (#116) * First attempt at downloading files * fix string reading of metadata * remove files when you're done with them * my code runs too fast * use fields * make channels into a list * make directory for files to land in * port to python2 | 10 November 2020, 15:59:50 UTC |
| 82dc8c6 | Beth Cimini | 09 November 2020, 22:05:49 UTC | fix some bugs related to a bad variable name in startCluster | 09 November 2020, 22:05:49 UTC |
| dc6703e | Beth Cimini | 06 November 2020, 21:02:08 UTC | fix typo in shutil | 06 November 2020, 21:02:08 UTC |
| d0c34ce | Beth Cimini | 06 November 2020, 20:58:53 UTC | Update run.py | 06 November 2020, 20:58:53 UTC |
| 115370a | Beth Cimini | 06 November 2020, 20:31:14 UTC | Remove DOCKER_BASE_SIZE now that it's auto-calculated | 06 November 2020, 20:31:14 UTC |
| 4f2897f | Beth Cimini | 06 November 2020, 20:04:20 UTC | Update config.py | 06 November 2020, 20:04:20 UTC |
| 1b52e5a | Beth Cimini | 05 November 2020, 21:15:37 UTC | DCP2.0 (#104) * Update run.py * Delete fabfile.py * Move previous fab functions into run.py * Debugging from lambda * tabs to spaces, issues/112 * issues/105 * issues/110, fix passing USE_PLUGINS * fix tabs to spaces in run.py * tab/space error in run_batch_general * issues/107 * issues/107 * add 'cheapest' mode to monitor * get credentials working * move machine type/price/date out of fleet file * move machine type/price/date out of fleet file * support running of monitor in cheapest mode * fix indentation in CHECK_IF_DONE * move cpDone * don't move done file, you still need to check it * don't move done file, you still need to check it * fix cmdstm for batch files * fixes to make log export work * python 3 support in run.py * move Python2 files to their own folder * pin watchtower to last python2 version * support for CellProfiler 4 * fix alarm time designation * Update README.md * Update requirements.txt * Update LICENSE * Add a bit about run_batch_general | 05 November 2020, 21:15:37 UTC |
| 338e7c6 | Beth Cimini | 03 November 2020, 15:20:49 UTC | Clone and install requirements for CPPlugins (#91) * Clone the plugins repo * Update Dockerfile * Add plugins directory to CP call * Add plugins to config * Add USE_PLUGINS * Fix -i bug in batchfiles, make plugins follow an input variable * Fix formatting of cmd lines * Space before --plugins * Rebase plugins use (#109) * Add userdata for each LaunchSpecification (#102) Co-authored-by: Ubuntu <ubuntu@ip-10-236-94-254.ec2.internal> * Batch files should be able to have input files too Co-authored-by: Matthew Chess <fuzzymath007@users.noreply.github.com> Co-authored-by: Ubuntu <ubuntu@ip-10-236-94-254.ec2.internal> Co-authored-by: Matthew Chess <fuzzymath007@users.noreply.github.com> Co-authored-by: Ubuntu <ubuntu@ip-10-236-94-254.ec2.internal> | 03 November 2020, 15:20:49 UTC |
| 2520c42 | David Stirling | 03 November 2020, 15:18:33 UTC | Create run_batch_general.py (#108) | 03 November 2020, 15:18:33 UTC |
| 4f0a525 | Beth Cimini | 30 September 2020, 17:07:12 UTC | Update cp-worker.py | 30 September 2020, 17:07:12 UTC |
| 3d03417 | Beth Cimini | 23 June 2020, 03:36:40 UTC | Batch files should be able to have input files too | 23 June 2020, 03:36:40 UTC |
| 04a7f9d | Matthew Chess | 04 May 2020, 14:03:33 UTC | Add userdata for each LaunchSpecification (#102) Co-authored-by: Ubuntu <ubuntu@ip-10-236-94-254.ec2.internal> | 04 May 2020, 14:03:33 UTC |
| c15d455 | Beth Cimini | 25 March 2020, 14:32:45 UTC | Check minimum file size, misc updates for 1.2.1 (#97) * Add min file size, bump DCP versions * Update Dockerfile * Update Makefile * Update Makefile * Update fabfile.py * Update cp-worker to check for a minimum file size If not specified, use 1 byte * Don't write bad code * Don't write bad code * Don't check alarms at midnight | 25 March 2020, 14:32:45 UTC |
| fa2e17c | Beth Cimini | 09 January 2020, 21:02:20 UTC | Update DockerhubTag | 09 January 2020, 21:02:20 UTC |
| 917922c | Beth Cimini | 04 September 2019, 16:05:21 UTC | Downscale extra machines if you have them. (#95) * Update run.py * Update run.py * Update run.py * Only scale down, not up * Update run.py * Update run.py * Update run.py * Update run.py * Update run.py * Update run.py | 04 September 2019, 16:05:21 UTC |
| ed81406 | Beth Cimini | 06 August 2019, 15:11:22 UTC | Update fabfile.py | 06 August 2019, 15:11:22 UTC |
| f1bca1d | Beth Cimini | 06 August 2019, 15:08:26 UTC | Update fabfile.py | 06 August 2019, 15:08:26 UTC |
| 6c59499 | Beth Cimini | 08 November 2018, 00:00:24 UTC | Update Makefile | 08 November 2018, 00:00:24 UTC |
| 13ff142 | bethac07 | 07 November 2018, 23:59:01 UTC | Dockerfile fixes | 07 November 2018, 23:59:01 UTC |
| 068a552 | Beth Cimini | 07 November 2018, 23:57:59 UTC | Make worker compatible with either CP2 or CP3 (#88) * Test if pipeline is CP2 or CP3 * misc fixes | 07 November 2018, 23:57:59 UTC |
| 42ca1cb | Beth Cimini | 07 November 2018, 20:26:37 UTC | Update Dockerfile (#87) | 07 November 2018, 20:26:37 UTC |
