Revision 22643ca2ed21b527ccdedbe6a99c2cfc29780df8 authored by achattaraj on 19 February 2021, 16:07:44 UTC, committed by GitHub on 19 February 2021, 16:07:44 UTC
1 parent 4c9648e
03_nfsim_job_manager.sh
#!/bin/bash
#SBATCH --job-name=FTC_60uM
#SBATCH -N 1
#SBATCH -n 1
#SBATCH -c 1
#SBATCH --array=1-100
#SBATCH --partition=general
#SBATCH --qos=specialuse
#SBATCH --mail-type=END
#SBATCH --mem=1G
#SBATCH -o /home/CAM/achattaraj/NFSim/jobfiles/%x_run%a.out
inpath="/home/CAM/achattaraj/NFSim"
sysname="4v_4v_FTC_60uM"
outpath="$inpath/$sysname"
stdpath="$inpath/$sysname/stdout"
mkdir -p $outpath
mkdir -p $stdpath
t_end=0.5
numSteps=100
utl=2
module load BioNetGen/2.5.0
NFsim "-xml" "$inpath/$sysname.xml" "-sim" "$t_end" "-v" "-seed" "$SLURM_ARRAY_TASK_ID" "-o" "$outpath/Run_$SLURM_ARRAY_TASK_ID.gdat" "-ss" "$outpath/Run_$SLURM_ARRAY_TASK_ID.species" "-utl" "$utl" "-cb" "-oSteps" "$numSteps" 1>"$stdpath/Run_$SLURM_ARRAY_TASK_ID.out" 2>"$stdpath/Run_$SLURM_ARRAY_TASK_ID.err"
Computing file changes ...
