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Revision 22f39e5e474c3c4f77a63ca59d26da9e8a6edddd authored by Alexey Sergushichev on 20 December 2019, 16:39:40 UTC, committed by Alexey Sergushichev on 20 December 2019, 16:39:40 UTC
Fix #146
1 parent 27d7ae0
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  • inst
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  • test_js.sh
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To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

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swh:1:rev:22f39e5e474c3c4f77a63ca59d26da9e8a6edddd
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swh:1:cnt:baebb1a21eec25399aaeff0d213ff0e4508a3970

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

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Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
test_js.sh
#!/bin/bash
R -e "devtools::install('.')"

mkdir -p inst/www/phantasus.js/jasmine/cache
cp "./inst/testdata/GSE27112-GPL6103.rda" inst/www/phantasus.js/jasmine/cache
cd inst/www/phantasus.js/
npm install karma --save-dev
npm install

R -e "phantasus::getES('GSE53986', destdir = 'jasmine/cache')"

touch server.log
R -e "phantasus::servePhantasus('0.0.0.0', 8000, cacheDir = 'jasmine/cache', preloadedDir = 'jasmine/cache', openInBrowser=FALSE)" 2>&1 | tee server.log &
PH_PID=$!


# Waiting for the server to start
while ! grep -q started server.log ; do sleep 0.1; done

sleep 0.1

./node_modules/karma/bin/karma start my.conf.js --single-run
RETVAL=$?

cd

function finish {
    kill $PH_PID
    echo Killed $PH_PID
    echo "Killed OpenCPU-server"
}
trap finish EXIT

if [ $RETVAL -eq 0 ]
then
    echo "Jasmine tests are successfully passed"
    exit 0
else
    echo "Tests failed" >&2
    exit 1
fi



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