Revision 23436d0439ee523b05b8aa913d30b244bdfee9d5 authored by Morgan Kain on 25 May 2021, 16:20:33 UTC, committed by GitHub on 25 May 2021, 16:20:33 UTC
1 parent 6b13e7a
6_real_data.R
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### Fit models to empirical data from the RRV system to be used in the NGM model ###
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## The scripts here are used to create the following data frames which are used to predict
## community R0 and host/vector competence
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# h_to_m_trans : host to mosquito transmission for the community of interest
# m_to_h_trans : mosquito to host transmission
# mos_surv_for_R0 : mosquito survival
# mosq_bite_pref : mosquito biting preference given the host community
# host_prop_for_R0 : proportions of each host in the given community
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## Host titer
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source("7_data.titer.R")
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## Host to mosquito transmission
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source("8_data.hm.R")
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## Mosquito to host transmission
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source("9_data.mh.R")
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## Mosquito survival.
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source("11_data.mosq_surv_same.R")
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## Mosquito biting preference
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source("12_data.mosq_bite_pref.R")
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## Mosquito biting rate
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## Just treat biting rate as the same across all hosts for now. When set up this way,
## just adjust the desired parameter value in parameters.R
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