Revision 26733f88b8b7c1409547009d4051aa4b27e3f50b authored by petrovich on 30 August 2018, 03:44:23 UTC, committed by petrovich on 30 August 2018, 03:44:23 UTC
1 parent 2172598
getES.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{getES}
\alias{getES}
\title{Load ExpressionSet by GEO identifier}
\usage{
getES(name, type = NA, destdir = tempdir(),
mirrorPath = "https://ftp.ncbi.nlm.nih.gov")
}
\arguments{
\item{name}{String, containing GEO identifier of the dataset.
It should start with 'GSE' or 'GDS' and can include exact GPL
to annotate dataset, separated with dash ('-') from the identifier.}
\item{type}{Type of the dataset: 'GSE' or 'GDS'. If not specified,
the function will take first three letters
of \code{name} variable as type.}
\item{destdir}{Directory for caching loaded Series and GPL
files from GEO database.}
\item{mirrorPath}{URL string which specifies the source of matrices.}
}
\value{
List of ExpressionSet objects, that were available by given
in \code{name} variable GEO identifier.
}
\description{
\code{getES} return the ExpressionSet object(s) corresponding
to GEO identifier.
}
\examples{
\dontrun{
getES('GSE14308', type = 'GSE', destdir = 'cache')
getES('GSE27112')
}
getES('GDS4922')
}
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