Revision 27c8cd6323338ff914350389032b345e593d3323 authored by Koustav Chandra on 22 October 2020, 15:11:22 UTC, committed by GitHub on 22 October 2020, 15:11:22 UTC
* Added PSD Var and Finalize-events-template-rate * Removed q-transform Removed q-transform.
1 parent c04e950
setup.py
#!/usr/bin/env python
# Copyright (C) 2012 Alex Nitz, Duncan Brown, Andrew Miller, Josh Willis
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 2 of the License, or (at your
# option) any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
"""
setup.py file for PyCBC package
"""
from __future__ import print_function
import sys
import os, subprocess, shutil
import platform
from distutils.errors import DistutilsError
from distutils.command.clean import clean as _clean
from setuptools.command.install import install as _install
from setuptools import Extension, setup, Command
from setuptools.command.build_ext import build_ext as _build_ext
from setuptools import find_packages
requires = []
setup_requires = ['numpy>=1.16.0']
install_requires = setup_requires + ['Mako>=1.0.1',
'cython>=0.29',
'decorator>=3.4.2',
'numpy>=1.16.0,<1.19; python_version >= "3.5"',
'numpy>=1.16.0,<1.17.0; python_version <= "2.7"',
'scipy>=0.16.0; python_version >= "3.5"',
'scipy>=0.16.0,<1.3.0; python_version <= "3.4"',
'matplotlib>=1.5.1',
'pillow',
'h5py>=2.5',
'jinja2',
'astropy>=2.0.3,<3.0.0; python_version <= "2.7"',
'astropy>=2.0.3; python_version > "3.0"',
'mpld3>=0.3',
'lscsoft-glue>=1.59.3',
'emcee==2.2.1',
'requests>=1.2.1',
'beautifulsoup4>=4.6.0',
'six>=1.10.0',
'ligo-segments',
'tqdm',
'gwdatafind',
]
def find_files(dirname, relpath=None):
def find_paths(dirname):
items = []
for fname in os.listdir(dirname):
path = os.path.join(dirname, fname)
if os.path.isdir(path):
items += find_paths(path)
elif not path.endswith(".py") and not path.endswith(".pyc"):
items.append(path)
return items
items = find_paths(dirname)
if relpath is None:
relpath = dirname
return [os.path.relpath(path, relpath) for path in items]
class cbuild_ext(_build_ext):
def run(self):
import pkg_resources
# At this point we can be sure pip has already installed numpy
numpy_incl = pkg_resources.resource_filename('numpy', 'core/include')
for ext in self.extensions:
if (hasattr(ext, 'include_dirs') and
numpy_incl not in ext.include_dirs):
ext.include_dirs.append(numpy_incl)
_build_ext.run(self)
# Add swig-generated files to the list of things to clean, so they
# get regenerated each time.
class clean(_clean):
def finalize_options (self):
_clean.finalize_options(self)
self.clean_files = []
self.clean_folders = ['docs/_build']
def run(self):
_clean.run(self)
for f in self.clean_files:
try:
os.unlink(f)
print('removed {0}'.format(f))
except:
pass
for fol in self.clean_folders:
shutil.rmtree(fol, ignore_errors=True)
print('removed {0}'.format(fol))
# write versioning info
def get_version_info():
"""Get VCS info and write version info to version.py
"""
from pycbc import _version_helper
class vdummy(object):
def __getattr__(self, attr):
return ''
# If this is a pycbc git repo always populate version information using GIT
try:
vinfo = _version_helper.generate_git_version_info()
except:
vinfo = vdummy()
vinfo.version = '1.16.dev12'
vinfo.release = 'False'
with open('pycbc/version.py', 'w') as f:
f.write("# coding: utf-8\n")
f.write("# Generated by setup.py for PyCBC on %s.\n\n"
% vinfo.build_date)
# print general info
f.write('version = \'%s\'\n' % vinfo.version)
f.write('date = \'%s\'\n' % vinfo.date)
f.write('release = %s\n' % vinfo.release)
f.write('last_release = \'%s\'\n' % vinfo.last_release)
# print git info
f.write('\ngit_hash = \'%s\'\n' % vinfo.hash)
f.write('git_branch = \'%s\'\n' % vinfo.branch)
f.write('git_tag = \'%s\'\n' % vinfo.tag)
f.write('git_author = \'%s\'\n' % vinfo.author)
f.write('git_committer = \'%s\'\n' % vinfo.committer)
f.write('git_status = \'%s\'\n' % vinfo.status)
f.write('git_builder = \'%s\'\n' % vinfo.builder)
f.write('git_build_date = \'%s\'\n' % vinfo.build_date)
f.write('git_verbose_msg = """Version: %s\n'
'Branch: %s\n'
'Tag: %s\n'
'Id: %s\n'
'Builder: %s\n'
'Build date: %s\n'
'Repository status is %s"""\n' %(
vinfo.version,
vinfo.branch,
vinfo.tag,
vinfo.hash,
vinfo.builder,
vinfo.build_date,
vinfo.status))
f.write('from pycbc._version import *\n')
version = vinfo.version
from pycbc import version
version = version.version
return version
class build_docs(Command):
user_options = []
description = "Build the documentation pages"
def initialize_options(self):
pass
def finalize_options(self):
pass
def run(self):
subprocess.check_call("cd docs; cp Makefile.std Makefile; sphinx-apidoc "
" -o ./ -f -A 'PyCBC dev team' -V '0.1' ../pycbc && make html",
stderr=subprocess.STDOUT, shell=True)
class build_gh_pages(Command):
user_options = []
description = "Build the documentation pages for GitHub"
def initialize_options(self):
pass
def finalize_options(self):
pass
def run(self):
subprocess.check_call("mkdir -p _gh-pages/latest && touch _gh-pages/.nojekyll && "
"cd docs; cp Makefile.gh_pages Makefile; sphinx-apidoc "
" -o ./ -f -A 'PyCBC dev team' -V '0.1' ../pycbc && make html",
stderr=subprocess.STDOUT, shell=True)
cmdclass = { 'build_docs' : build_docs,
'build_gh_pages' : build_gh_pages,
'clean' : clean,
'build_ext':cbuild_ext
}
extras_require = {'cuda': ['pycuda>=2015.1', 'scikit-cuda']}
# do the actual work of building the package
VERSION = get_version_info()
cythonext = ['waveform.spa_tmplt',
'waveform.utils',
'types.array',
'filter.matchedfilter',
'vetoes.chisq']
ext = []
cython_compile_args = ['-O3', '-w', '-ffast-math',
'-ffinite-math-only']
if platform.machine() == 'x86_64':
cython_compile_args.append('-msse4.2')
cython_link_args = []
# Mac's clang compiler doesn't have openMP support by default. Therefore
# disable openmp builds on MacOSX. Optimization should never really be a
# concern on that OS, and this line can be commented out if needed anyway.
# Mac's also alias gcc and can run into troubles getting libc correctly
if not sys.platform == 'darwin':
cython_compile_args += ['-fopenmp']
cython_link_args += ['-fopenmp']
else:
cython_compile_args += ["-stdlib=libc++"]
cython_link_args += ["-stdlib=libc++"]
for name in cythonext:
e = Extension("pycbc.%s_cpu" % name,
["pycbc/%s_cpu.pyx" % name.replace('.', '/')],
extra_compile_args=cython_compile_args,
extra_link_args=cython_link_args,
compiler_directives={'embedsignature': True})
ext.append(e)
# Not all modules work like this:
e = Extension("pycbc.fft.fftw_pruned_cython",
["pycbc/fft/fftw_pruned_cython.pyx"],
extra_compile_args=cython_compile_args,
extra_link_args=cython_link_args,
compiler_directives={'embedsignature': True})
ext.append(e)
e = Extension("pycbc.events.eventmgr_cython",
["pycbc/events/eventmgr_cython.pyx"],
extra_compile_args=cython_compile_args,
extra_link_args=cython_link_args,
compiler_directives={'embedsignature': True})
ext.append(e)
e = Extension("pycbc.events.simd_threshold_cython",
["pycbc/events/simd_threshold_cython.pyx"],
language='c++',
extra_compile_args=cython_compile_args,
extra_link_args=cython_link_args,
compiler_directives={'embedsignature': True})
ext.append(e)
e = Extension("pycbc.filter.simd_correlate_cython",
["pycbc/filter/simd_correlate_cython.pyx"],
language='c++',
extra_compile_args=cython_compile_args,
extra_link_args=cython_link_args,
compiler_directives={'embedsignature': True})
ext.append(e)
e = Extension("pycbc.waveform.decompress_cpu_cython",
["pycbc/waveform/decompress_cpu_cython.pyx"],
language='c++',
extra_compile_args=cython_compile_args,
extra_link_args=cython_link_args,
compiler_directives={'embedsignature': True})
ext.append(e)
setup (
name = 'PyCBC',
version = VERSION,
description = 'Core library to analyze gravitational-wave data, find signals, and study their parameters.',
long_description = open('descr.rst').read(),
author = 'The PyCBC team',
author_email = 'alex.nitz@gmail.org',
url = 'http://www.pycbc.org/',
download_url = 'https://github.com/gwastro/pycbc/tarball/v%s' % VERSION,
keywords = ['ligo', 'physics', 'gravity', 'signal processing', 'gravitational waves'],
cmdclass = cmdclass,
setup_requires = setup_requires,
extras_require = extras_require,
install_requires = install_requires,
scripts = find_files('bin', relpath='./'),
packages = find_packages(),
package_data = {'pycbc.workflow': find_files('pycbc/workflow'),
'pycbc.results': find_files('pycbc/results'),
'pycbc.tmpltbank': find_files('pycbc/tmpltbank')},
ext_modules = ext,
classifiers=[
'Programming Language :: Python',
'Programming Language :: Python :: 2.7',
'Programming Language :: Python :: 3.6',
'Intended Audience :: Science/Research',
'Natural Language :: English',
'Topic :: Scientific/Engineering',
'Topic :: Scientific/Engineering :: Astronomy',
'Topic :: Scientific/Engineering :: Physics',
'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
],
)
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