Revision 27fa41066bf09a3c1ca00fd333f72755e481b16f authored by H.F on 13 April 2021, 10:57:05 UTC, committed by H.F on 13 April 2021, 10:57:05 UTC
1 parent f3455fe
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test16_21_30.jl
include("trackingcell.jl");
include("lineage.jl");
include("tiffxml.jl");

data_dir = "/datahub/rawdata/tandeng/mRNA_imaging/mRNA_confocal_hamamatsu-60X-TIRF";
ret_dir = "/datahub/rawdata/tandeng/mRNA_imaging/mRNA_confocal_hamamatsu-60X-TIRF/20200316_result";

for s in 21:30
	img = load(File(format"TIFF","$data_dir/20200316/HE7-11-1-80uw-PWM_1_s$s.ome.tiff"));
	img_edge, mask_edge, mask_clear = split_cell_LoG(img, size(img)[3]รท20);
	save("$ret_dir/img_edge_s$s.tiff", img_edge);

	nucleus_pos = [ component_centroids(label_components(mask_clear[:,:,i])) for i in 1:size(mask_clear)[3] ];

	paths = generate_path(nucleus_pos);

	for i in 1:length(paths)
		save("$ret_dir/s$s-c$i.tiff", N0f16.(export_cell(paths[i], img, mask_edge)));
		embedxml(700, 700, 20, length(paths[i]), "$ret_dir/s$s-c$i.tiff");
	end
end
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