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Revision Author Date Message Commit Date
27fa410 upload running script 13 April 2021, 10:57 UTC
f3455fe use undef array instead of zeros array 08 April 2021, 09:41 UTC
e626705 fix bug: imaris will generate same ID for two batch result, but one is empety. don't copy it 17 March 2021, 13:01 UTC
5c5d55e remove Images dependency in julia2ims.jl 15 March 2021, 16:04 UTC
d3b997f Merge branch 'master' of github.com:JiangXL/CoutingmRNA.jl 11 March 2021, 15:11 UTC
9c4adc1 update 11 March 2021, 15:11 UTC
dd630ab add imaris5file writer format 08 March 2021, 08:57 UTC
e06b003 remove Scene and Scene8 if they exist 03 March 2021, 08:39 UTC
a9631ee copy ims from imaris database 02 March 2021, 11:47 UTC
09ca982 update julia2ims.jl based on new HDF5.jl api 01 March 2021, 14:56 UTC
8ee9dfa add script to map imaris file name and internal imaris id 21 February 2021, 09:42 UTC
0e0f9b9 update code for data 20200307,0308 11 December 2020, 01:49 UTC
3c826a1 add julia2ims.jl 10 December 2020, 07:39 UTC
d46cd40 add DOI 11 September 2020, 13:02 UTC
0625109 V1.0 reorganize files for publish 11 September 2020, 12:58 UTC
c7ae182 Update README.md 08 September 2020, 14:50 UTC
ddc8f5f Update README.md 21 June 2020, 03:05 UTC
5c415ca Update README.md 21 June 2020, 03:04 UTC
0dc4401 update document 17 June 2020, 14:11 UTC
dbbc437 update document 17 June 2020, 09:26 UTC
2a3fcfe update README 16 June 2020, 13:57 UTC
5379a3a update README 15 June 2020, 13:16 UTC
128106e update document 14 June 2020, 04:05 UTC
328c012 accept ims as input and remove fixed height and width 13 May 2020, 15:27 UTC
a07533c little fix 12 May 2020, 13:56 UTC
7981563 use bash script to control procedure 09 May 2020, 09:36 UTC
a76a1ae fix index error bug 09 May 2020, 08:39 UTC
1f4a651 output final cell imagge to imaris data format 08 May 2020, 15:39 UTC
92a29e2 all are runable, but tiffxml still need more work for Argument list too long error 05 May 2020, 15:16 UTC
ba26bb1 fix pick_cell array index bug & improve segmentation3d 03 May 2020, 10:43 UTC
cd3ff19 speed up and find some strange problem 02 May 2020, 15:22 UTC
5ff9602 speed up and stable 3d segmentation 01 May 2020, 16:19 UTC
98bb622 3d-time tracking and mulit-threads 29 April 2020, 14:58 UTC
5c0a58c use all detected seed to split region instead of using longlived seed only. 28 April 2020, 15:22 UTC
e4dfb5e use yen-threshold for 3d cell 26 April 2020, 17:17 UTC
2219bcc v0.2: extract time-line and split contacted cell 26 April 2020, 17:16 UTC
15d9127 use new method to tracking cell: turn 2dimg-1dtime to 3d space 25 April 2020, 13:54 UTC
9d5a1f8 normalize cell intensity to correct photobleach 23 April 2020, 14:48 UTC
3406130 实现 3D 细胞核的分离 21 April 2020, 14:11 UTC
ecdc105 update tiffxml.jl using exiftool 21 April 2020, 07:15 UTC
b472522 isolcate cell roughly and embed tiffxml to tiff 20 April 2020, 14:52 UTC
11fd5b6 first version 15 April 2020, 12:13 UTC
1ce51a4 Initial commit 14 April 2020, 01:23 UTC
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